Wall clock time and date at job start Tue Mar 31 2020 14:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47114 * 2 1 4 4 O 1.21305 * 119.99967 * 359.97438 * 3 2 1 5 5 C 1.46830 * 120.00327 * 180.02562 * 3 2 1 6 6 C 1.40070 * 120.09913 * 359.71942 * 5 3 2 7 7 C 1.36601 * 119.89642 * 179.78902 * 6 5 3 8 8 C 1.39222 * 120.10106 * 0.49156 * 7 6 5 9 9 N 1.39297 * 119.89607 * 179.71805 * 8 7 6 10 10 C 1.34775 * 120.00137 * 213.59537 * 9 8 7 11 11 O 1.21582 * 119.99663 * 5.32578 * 10 9 8 12 12 N 1.34775 * 120.00203 * 185.32277 * 10 9 8 13 13 C 1.46501 * 119.99900 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46932 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47316 * 299.99797 * 14 13 12 16 16 C 1.53000 * 109.47245 * 60.00010 * 14 13 12 17 17 C 1.50706 * 109.47060 * 179.97438 * 14 13 12 18 18 H 1.07997 * 119.99820 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99852 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00396 * 359.97438 * 19 17 14 21 21 Si 1.86808 * 120.00010 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.46859 * 89.99550 * 21 19 17 23 23 H 1.48497 * 109.47312 * 209.99985 * 21 19 17 24 24 H 1.48501 * 109.46742 * 330.00088 * 21 19 17 25 25 C 1.39225 * 120.20376 * 359.73907 * 8 7 6 26 26 C 1.36594 * 120.10024 * 0.02562 * 25 8 7 27 27 H 1.09001 * 109.47517 * 299.99988 * 1 2 3 28 28 H 1.09002 * 109.47539 * 60.00307 * 1 2 3 29 29 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47539 * 119.99692 * 2 1 3 31 31 H 1.09001 * 109.47517 * 240.00012 * 2 1 3 32 32 H 1.08001 * 120.04709 * 0.02562 * 6 5 3 33 33 H 1.08004 * 119.94654 * 180.22880 * 7 6 5 34 34 H 0.97000 * 119.99984 * 33.60168 * 9 8 7 35 35 H 0.97001 * 120.00316 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.46959 * 299.99632 * 13 12 10 37 37 H 1.09003 * 109.47500 * 59.99925 * 13 12 10 38 38 H 1.08997 * 109.46997 * 60.00032 * 15 14 13 39 39 H 1.09006 * 109.47548 * 180.02562 * 15 14 13 40 40 H 1.08997 * 109.47363 * 300.00100 * 15 14 13 41 41 H 1.09008 * 109.47015 * 60.00009 * 16 14 13 42 42 H 1.08994 * 109.47376 * 179.97438 * 16 14 13 43 43 H 1.08997 * 109.46975 * 299.99911 * 16 14 13 44 44 H 0.97004 * 119.99946 * 179.97438 * 20 19 17 45 45 H 1.07995 * 119.94665 * 179.97438 * 25 8 7 46 46 H 1.08001 * 120.05220 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3428 -0.0005 5 6 3.4758 1.6892 -0.0006 6 6 4.3879 0.6262 0.0048 7 6 5.7300 0.8806 -0.0001 8 6 6.1917 2.1940 -0.0001 9 7 7.5612 2.4486 0.0008 10 6 8.0457 3.5277 0.6467 11 8 7.3013 4.2248 1.3087 12 7 9.3552 3.8342 0.5588 13 6 9.8818 5.0069 1.2613 14 6 11.3843 5.1268 0.9984 15 6 12.0926 3.8686 1.5043 16 6 11.6284 5.2802 -0.5042 17 6 11.9259 6.3335 1.7206 18 1 11.2647 6.9527 2.3086 19 6 13.2655 6.6470 1.6305 20 7 14.0708 5.8928 0.9148 21 14 13.9371 8.1425 2.5263 22 1 14.3757 7.7475 3.8889 23 1 15.0933 8.6923 1.7740 24 1 12.8759 9.1763 2.6281 25 6 5.2889 3.2538 -0.0006 26 6 3.9450 3.0089 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 4.0306 -0.3930 0.0090 33 1 6.4341 0.0615 0.0003 34 1 8.1663 1.8492 -0.4635 35 1 9.9490 3.2782 0.0303 36 1 9.3769 5.9033 0.9012 37 1 9.7083 4.8974 2.3319 38 1 11.7008 2.9961 0.9816 39 1 13.1631 3.9542 1.3174 40 1 11.9187 3.7593 2.5747 41 1 11.1238 6.1767 -0.8646 42 1 12.6987 5.3661 -0.6915 43 1 11.2366 4.4077 -1.0269 44 1 15.0132 6.1136 0.8512 45 1 5.6516 4.2711 -0.0002 46 1 3.2453 3.8316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000626729341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:50 Heat of formation + Delta-G solvation = -50.145224 kcal Electronic energy + Delta-G solvation = -25737.783726 eV Core-core repulsion = 22013.263635 eV Total energy + Delta-G solvation = -3724.520091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.78432 -39.84003 -38.31085 -36.56189 -34.71590 -33.48971 -33.19563 -31.24727 -31.07840 -29.83048 -26.00246 -25.79905 -25.41455 -24.72433 -23.33687 -22.39070 -20.90324 -19.78922 -18.92213 -18.47762 -17.77974 -16.89484 -15.94423 -15.80853 -15.69503 -15.36082 -14.86532 -14.78996 -14.41387 -14.17626 -13.85458 -13.67060 -13.53745 -13.10477 -12.98063 -12.90577 -12.61831 -12.47081 -12.26658 -12.06943 -11.49163 -11.48831 -11.35698 -11.25952 -10.93217 -10.73551 -10.51190 -10.39062 -10.26745 -10.05845 -9.79935 -9.70819 -9.40887 -9.21337 -8.86202 -8.64124 -8.42392 -8.12937 -6.07331 -4.17466 0.48614 1.28592 2.21423 2.73396 3.25474 3.27980 3.32722 3.36916 3.75066 3.81342 4.30872 4.43318 4.53725 4.69850 4.74384 4.78501 4.95150 5.14659 5.19785 5.23208 5.37700 5.44501 5.53293 5.59925 5.80456 5.86650 5.97876 6.02883 6.17950 6.24986 6.26104 6.39867 6.42072 6.67189 6.74232 6.77455 6.85720 6.90520 6.94739 7.06877 7.29083 7.37828 7.48600 7.64480 7.94330 8.03441 8.16365 8.32725 8.69953 8.83389 9.48697 10.94119 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.039539 B = 0.002059 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.987747 B =13592.947559 C =13998.607120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.170 4.170 3 C 0.398 3.602 4 O -0.460 6.460 5 C -0.207 4.207 6 C -0.048 4.048 7 C -0.171 4.171 8 C 0.218 3.782 9 N -0.691 5.691 10 C 0.694 3.306 11 O -0.576 6.576 12 N -0.723 5.723 13 C 0.148 3.852 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.139 4.139 26 C -0.035 4.035 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.408 0.592 35 H 0.396 0.604 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.005 0.995 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.086 0.914 43 H 0.005 0.995 44 H 0.260 0.740 45 H 0.144 0.856 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.785 -15.263 -5.249 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.277 3.723 4 O -0.336 6.336 5 C -0.209 4.209 6 C -0.067 4.067 7 C -0.192 4.192 8 C 0.120 3.880 9 N -0.338 5.338 10 C 0.394 3.606 11 O -0.453 6.453 12 N -0.377 5.377 13 C 0.025 3.975 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.722 3.278 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.159 4.159 26 C -0.054 4.054 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.244 0.756 35 H 0.232 0.768 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.024 0.976 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.105 0.895 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.162 0.838 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.543 -14.048 -4.670 22.955 hybrid contribution 1.265 0.124 0.050 1.272 sum -16.278 -13.924 -4.620 21.913 Atomic orbital electron populations 1.21592 0.93776 1.01675 1.03104 1.21985 0.98246 0.96022 1.04519 1.22383 0.87925 0.91050 0.70974 1.90524 1.58450 1.47794 1.36877 1.20396 0.94729 0.94391 1.11402 1.20889 0.92153 0.98479 0.95196 1.20595 0.96308 0.94864 1.07444 1.17850 0.82721 0.93434 0.93995 1.42761 1.06130 1.28736 1.56146 1.16088 0.83510 0.80769 0.80184 1.90933 1.57494 1.52058 1.44788 1.45588 1.06285 1.31957 1.53871 1.21708 0.96563 0.84160 0.95050 1.18384 0.87186 0.95201 0.93759 1.21830 1.04370 0.94758 0.97856 1.21829 1.04080 0.96451 0.96445 1.20957 0.93662 1.09776 1.30054 0.92353 1.24878 0.96874 0.96629 0.95136 1.69797 1.04578 1.38103 1.39948 0.86557 0.78582 0.83003 0.79659 1.20698 1.21251 1.19872 1.21024 0.92279 1.00106 1.02530 1.21042 0.95259 0.96079 0.93046 0.92133 0.92152 0.92141 0.88394 0.88415 0.84965 0.85109 0.75648 0.76844 0.92540 0.92581 0.97613 0.89541 0.95381 0.95363 0.89547 0.97602 0.92965 0.83825 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.20 37.15 0.34 -0.64 16 2 C -0.17 -1.09 5.02 -27.89 -0.14 -1.23 16 3 C 0.40 4.09 7.11 -30.84 -0.22 3.87 16 4 O -0.46 -6.24 15.96 5.54 0.09 -6.15 16 5 C -0.21 -2.21 5.87 -105.05 -0.62 -2.82 16 6 C -0.05 -0.41 9.42 -39.49 -0.37 -0.78 16 7 C -0.17 -1.58 9.90 -39.81 -0.39 -1.98 16 8 C 0.22 2.66 6.27 -83.74 -0.53 2.14 16 9 N -0.69 -8.40 5.32 -14.21 -0.08 -8.48 16 10 C 0.69 11.41 8.29 -86.92 -0.72 10.69 16 11 O -0.58 -11.59 14.02 5.29 0.07 -11.52 16 12 N -0.72 -11.96 4.96 -65.22 -0.32 -12.28 16 13 C 0.15 3.00 4.50 -4.04 -0.02 2.98 16 14 C 0.06 1.23 0.50 -155.66 -0.08 1.16 16 15 C -0.13 -2.81 8.08 37.15 0.30 -2.51 16 16 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 17 C -0.51 -12.89 8.01 -34.44 -0.28 -13.16 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 20 N -0.89 -23.02 9.35 55.43 0.52 -22.50 16 21 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.14 -1.90 8.58 -39.81 -0.34 -2.24 16 26 C -0.04 -0.44 9.55 -39.49 -0.38 -0.82 16 27 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.10 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.13 0.66 7.03 -52.49 -0.37 0.29 16 33 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.41 3.54 8.83 -40.82 -0.36 3.18 16 35 H 0.40 5.73 6.18 -40.82 -0.25 5.48 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 39 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 43 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 44 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 45 H 0.14 2.25 6.41 -52.49 -0.34 1.91 16 46 H 0.13 1.65 7.64 -52.49 -0.40 1.25 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -30.19 373.13 -9.16 -39.35 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.82 Total: 6.86 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -3.23 Total: -6.26 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.12 Total: -43.26 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.16 Total: -17.67 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.19 -9.16 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000626729341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.794 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds