Wall clock time and date at job start Tue Mar 31 2020 14:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47114 * 2 1 4 4 O 1.21305 * 119.99967 * 359.97438 * 3 2 1 5 5 C 1.46830 * 120.00327 * 180.02562 * 3 2 1 6 6 C 1.40070 * 120.09913 * 359.71942 * 5 3 2 7 7 C 1.36601 * 119.89642 * 179.78902 * 6 5 3 8 8 C 1.39222 * 120.10106 * 0.49156 * 7 6 5 9 9 N 1.39297 * 119.89607 * 179.71805 * 8 7 6 10 10 C 1.34775 * 120.00137 * 213.59537 * 9 8 7 11 11 O 1.21582 * 119.99663 * 5.32578 * 10 9 8 12 12 N 1.34775 * 120.00203 * 185.32277 * 10 9 8 13 13 C 1.46501 * 119.99900 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46932 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47316 * 299.99797 * 14 13 12 16 16 C 1.53000 * 109.47245 * 60.00010 * 14 13 12 17 17 C 1.50706 * 109.47060 * 179.97438 * 14 13 12 18 18 H 1.07997 * 119.99820 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99852 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00396 * 359.97438 * 19 17 14 21 21 Si 1.86808 * 120.00010 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.46859 * 89.99550 * 21 19 17 23 23 H 1.48497 * 109.47312 * 209.99985 * 21 19 17 24 24 H 1.48501 * 109.46742 * 330.00088 * 21 19 17 25 25 C 1.39225 * 120.20376 * 359.73907 * 8 7 6 26 26 C 1.36594 * 120.10024 * 0.02562 * 25 8 7 27 27 H 1.09001 * 109.47517 * 299.99988 * 1 2 3 28 28 H 1.09002 * 109.47539 * 60.00307 * 1 2 3 29 29 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47539 * 119.99692 * 2 1 3 31 31 H 1.09001 * 109.47517 * 240.00012 * 2 1 3 32 32 H 1.08001 * 120.04709 * 0.02562 * 6 5 3 33 33 H 1.08004 * 119.94654 * 180.22880 * 7 6 5 34 34 H 0.97000 * 119.99984 * 33.60168 * 9 8 7 35 35 H 0.97001 * 120.00316 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.46959 * 299.99632 * 13 12 10 37 37 H 1.09003 * 109.47500 * 59.99925 * 13 12 10 38 38 H 1.08997 * 109.46997 * 60.00032 * 15 14 13 39 39 H 1.09006 * 109.47548 * 180.02562 * 15 14 13 40 40 H 1.08997 * 109.47363 * 300.00100 * 15 14 13 41 41 H 1.09008 * 109.47015 * 60.00009 * 16 14 13 42 42 H 1.08994 * 109.47376 * 179.97438 * 16 14 13 43 43 H 1.08997 * 109.46975 * 299.99911 * 16 14 13 44 44 H 0.97004 * 119.99946 * 179.97438 * 20 19 17 45 45 H 1.07995 * 119.94665 * 179.97438 * 25 8 7 46 46 H 1.08001 * 120.05220 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3428 -0.0005 5 6 3.4758 1.6892 -0.0006 6 6 4.3879 0.6262 0.0048 7 6 5.7300 0.8806 -0.0001 8 6 6.1917 2.1940 -0.0001 9 7 7.5612 2.4486 0.0008 10 6 8.0457 3.5277 0.6467 11 8 7.3013 4.2248 1.3087 12 7 9.3552 3.8342 0.5588 13 6 9.8818 5.0069 1.2613 14 6 11.3843 5.1268 0.9984 15 6 12.0926 3.8686 1.5043 16 6 11.6284 5.2802 -0.5042 17 6 11.9259 6.3335 1.7206 18 1 11.2647 6.9527 2.3086 19 6 13.2655 6.6470 1.6305 20 7 14.0708 5.8928 0.9148 21 14 13.9371 8.1425 2.5263 22 1 14.3757 7.7475 3.8889 23 1 15.0933 8.6923 1.7740 24 1 12.8759 9.1763 2.6281 25 6 5.2889 3.2538 -0.0006 26 6 3.9450 3.0089 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 4.0306 -0.3930 0.0090 33 1 6.4341 0.0615 0.0003 34 1 8.1663 1.8492 -0.4635 35 1 9.9490 3.2782 0.0303 36 1 9.3769 5.9033 0.9012 37 1 9.7083 4.8974 2.3319 38 1 11.7008 2.9961 0.9816 39 1 13.1631 3.9542 1.3174 40 1 11.9187 3.7593 2.5747 41 1 11.1238 6.1767 -0.8646 42 1 12.6987 5.3661 -0.6915 43 1 11.2366 4.4077 -1.0269 44 1 15.0132 6.1136 0.8512 45 1 5.6516 4.2711 -0.0002 46 1 3.2453 3.8316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000626729341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:49 Heat of formation + Delta-G solvation = -67.929349 kcal Electronic energy + Delta-G solvation = -25738.554904 eV Core-core repulsion = 22013.263635 eV Total energy + Delta-G solvation = -3725.291269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87009 -40.81424 -39.36015 -38.15226 -35.85446 -35.08166 -33.85465 -32.78428 -32.07083 -30.82929 -27.55682 -27.52306 -26.97834 -25.85296 -24.29607 -23.19145 -22.12345 -20.71041 -20.51048 -19.71239 -18.81584 -17.80127 -17.74834 -16.87399 -16.66721 -16.40651 -16.35542 -16.15356 -15.53211 -15.19865 -15.07984 -14.74537 -14.73682 -14.40094 -14.26472 -14.01802 -13.73753 -13.62872 -13.20520 -13.10521 -13.06207 -12.70237 -12.63862 -12.60072 -12.26208 -12.18854 -12.13583 -11.96781 -11.58319 -11.49035 -11.32910 -11.16477 -10.71274 -10.63899 -10.40151 -10.07422 -10.04401 -9.12273 -8.02845 -6.17937 -0.37784 0.45523 1.35079 1.42061 1.45376 1.52493 1.60348 2.05557 2.45508 2.86727 3.10628 3.21096 3.21612 3.80259 3.94361 4.12021 4.30205 4.32357 4.34116 4.39673 4.51009 4.51987 4.53206 4.71006 4.84588 4.96143 5.01939 5.05468 5.06030 5.08163 5.11282 5.18935 5.20102 5.25837 5.32897 5.35096 5.39245 5.49431 5.56972 5.67705 5.67848 5.94283 5.94462 6.16132 6.21738 6.43478 6.62622 6.85987 6.96516 7.43434 7.49721 8.95925 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.039539 B = 0.002059 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.987747 B =13592.947559 C =13998.607120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.163 4.163 3 C 0.395 3.605 4 O -0.506 6.506 5 C -0.212 4.212 6 C -0.030 4.030 7 C -0.155 4.155 8 C 0.197 3.803 9 N -0.671 5.671 10 C 0.695 3.305 11 O -0.618 6.618 12 N -0.715 5.715 13 C 0.166 3.834 14 C 0.051 3.949 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.527 4.527 18 H 0.044 0.956 19 C 0.029 3.971 20 N -0.897 5.897 21 Si 0.943 3.057 22 H -0.279 1.279 23 H -0.283 1.283 24 H -0.277 1.277 25 C -0.162 4.162 26 C -0.055 4.055 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.428 0.572 35 H 0.409 0.591 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.018 0.982 41 H 0.016 0.984 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.260 0.740 45 H 0.110 0.890 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.087 -19.245 -5.900 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.200 4.200 3 C 0.277 3.723 4 O -0.385 6.385 5 C -0.214 4.214 6 C -0.048 4.048 7 C -0.175 4.175 8 C 0.100 3.900 9 N -0.319 5.319 10 C 0.396 3.604 11 O -0.497 6.497 12 N -0.370 5.370 13 C 0.042 3.958 14 C 0.050 3.950 15 C -0.178 4.178 16 C -0.178 4.178 17 C -0.566 4.566 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.536 5.536 21 Si 0.770 3.230 22 H -0.205 1.205 23 H -0.208 1.208 24 H -0.203 1.203 25 C -0.183 4.183 26 C -0.074 4.074 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.200 0.800 33 H 0.188 0.812 34 H 0.267 0.733 35 H 0.247 0.753 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.129 0.871 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.836 -18.091 -5.361 25.964 hybrid contribution 1.258 1.323 0.235 1.841 sum -16.577 -16.769 -5.126 24.130 Atomic orbital electron populations 1.21620 0.94453 1.02771 1.01569 1.22074 0.97643 0.93104 1.07179 1.23051 0.87357 0.92641 0.69237 1.90520 1.59302 1.49592 1.39061 1.20668 0.95844 0.94065 1.10865 1.21402 0.91221 0.99890 0.92312 1.21012 0.97439 0.94081 1.05013 1.18078 0.82105 0.94469 0.95396 1.42408 1.06617 1.27557 1.55354 1.16170 0.82900 0.81333 0.80027 1.90920 1.58398 1.53758 1.46671 1.45216 1.06737 1.31173 1.53898 1.21200 0.95303 0.84989 0.94324 1.18382 0.88172 0.94530 0.93927 1.21662 1.02767 0.95683 0.97663 1.21667 1.02436 0.97513 0.96182 1.21249 0.93897 1.11018 1.30443 0.93797 1.25420 0.97179 0.98624 0.95877 1.69896 1.04559 1.38790 1.40352 0.85793 0.77850 0.80568 0.78784 1.20524 1.20846 1.20256 1.20831 0.93281 0.99390 1.04754 1.20999 0.94634 0.97269 0.94518 0.93892 0.93652 0.89602 0.85597 0.85241 0.80004 0.81215 0.73278 0.75304 0.94402 0.94261 0.94138 0.91918 0.96309 0.96438 0.91891 0.94233 0.93024 0.87145 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.20 71.98 0.66 -1.01 16 2 C -0.16 -1.44 5.02 29.85 0.15 -1.29 16 3 C 0.40 7.52 7.11 27.94 0.20 7.72 16 4 O -0.51 -14.04 15.96 -3.11 -0.05 -14.09 16 5 C -0.21 -4.15 5.87 -20.14 -0.12 -4.27 16 6 C -0.03 -0.36 9.42 22.33 0.21 -0.15 16 7 C -0.16 -2.18 9.90 22.12 0.22 -1.96 16 8 C 0.20 4.48 6.27 38.43 0.24 4.73 16 9 N -0.67 -15.05 5.32 -317.14 -1.69 -16.73 16 10 C 0.70 22.58 8.29 179.06 1.48 24.06 16 11 O -0.62 -25.72 14.02 -3.97 -0.06 -25.78 16 12 N -0.72 -22.96 4.96 -478.53 -2.37 -25.34 16 13 C 0.17 6.83 4.50 86.38 0.39 7.21 16 14 C 0.05 2.26 0.50 -52.93 -0.03 2.23 16 15 C -0.12 -5.07 8.08 71.98 0.58 -4.49 16 16 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 17 C -0.53 -27.37 8.01 25.60 0.21 -27.17 16 18 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 19 C 0.03 1.50 5.15 84.65 0.44 1.93 16 20 N -0.90 -46.82 9.35 21.45 0.20 -46.62 16 21 Si 0.94 42.21 29.54 68.60 2.03 44.23 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 C -0.16 -4.62 8.58 22.12 0.19 -4.43 16 26 C -0.06 -1.44 9.55 22.33 0.21 -1.23 16 27 H 0.04 0.63 8.10 -2.39 -0.02 0.61 16 28 H 0.04 0.64 8.10 -2.39 -0.02 0.63 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.13 0.50 8.08 -2.39 -0.02 0.48 16 31 H 0.13 0.41 8.09 -2.39 -0.02 0.39 16 32 H 0.18 0.44 7.03 -2.91 -0.02 0.42 16 33 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.43 5.97 8.83 -92.71 -0.82 5.15 16 35 H 0.41 10.82 6.18 -92.71 -0.57 10.25 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 39 H 0.06 2.98 6.07 -2.38 -0.01 2.96 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 43 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 44 H 0.26 13.11 8.31 -92.71 -0.77 12.34 16 45 H 0.11 3.83 6.41 -2.91 -0.02 3.81 16 46 H 0.12 3.28 7.64 -2.91 -0.02 3.26 16 Total: -1.00 -70.59 373.13 3.29 -67.30 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.38 Total: 19.69 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 5.62 Total: -2.67 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -3.86 Total: -88.68 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.11 Total: -39.87 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -70.59 3.29 -67.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000626729341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.630 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds