Wall clock time and date at job start Tue Mar 31 2020 14:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50710 * 109.47116 * 2 1 4 4 O 1.21283 * 119.99471 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00307 * 180.02562 * 3 2 1 6 6 C 1.46921 * 120.63051 * 180.02562 * 5 3 2 7 7 C 1.53199 * 108.77312 * 233.63074 * 6 5 3 8 8 C 1.53038 * 109.30857 * 305.36343 * 7 6 5 9 9 N 1.46505 * 109.45594 * 181.38912 * 8 7 6 10 10 C 1.39676 * 120.00079 * 155.00098 * 9 8 7 11 11 C 1.39012 * 120.03933 * 359.97201 * 10 9 8 12 12 C 1.38143 * 120.06228 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.14227 * 359.72769 * 12 11 10 14 14 C 1.38912 * 120.07871 * 0.55434 * 13 12 11 15 15 O 1.35751 * 120.03093 * 179.72008 * 14 13 12 16 16 C 1.34833 * 117.00044 * 174.18559 * 15 14 13 17 17 H 1.08001 * 119.99756 * 5.05336 * 16 15 14 18 18 C 1.38647 * 120.00273 * 185.05790 * 16 15 14 19 19 N 1.31562 * 119.99649 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00109 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47205 * 59.99691 * 20 18 16 22 22 H 1.48503 * 109.46997 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46898 * 299.99529 * 20 18 16 24 24 C 1.38746 * 120.04204 * 179.97438 * 10 9 8 25 25 C 1.53034 * 109.54101 * 61.36963 * 8 7 6 26 26 C 1.46925 * 120.62785 * 0.02562 * 5 3 2 27 27 H 1.09000 * 109.47189 * 299.99678 * 1 2 3 28 28 H 1.08995 * 109.47676 * 60.00080 * 1 2 3 29 29 H 1.09000 * 109.46664 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47189 * 240.00322 * 2 1 3 31 31 H 1.08995 * 109.47676 * 119.99920 * 2 1 3 32 32 H 1.08998 * 109.58830 * 113.84357 * 6 5 3 33 33 H 1.09006 * 109.70481 * 353.48503 * 6 5 3 34 34 H 1.08999 * 109.49330 * 185.41363 * 7 6 5 35 35 H 1.08996 * 109.50047 * 65.31257 * 7 6 5 36 36 H 1.09006 * 109.46279 * 301.35410 * 8 7 6 37 37 H 0.96996 * 120.00220 * 334.99506 * 9 8 7 38 38 H 1.08000 * 119.96626 * 0.02562 * 11 10 9 39 39 H 1.08004 * 119.93082 * 179.97438 * 12 11 10 40 40 H 1.08003 * 119.96054 * 180.29241 * 13 12 11 41 41 H 0.96998 * 119.99725 * 180.02562 * 19 18 16 42 42 H 1.07995 * 120.07071 * 359.97438 * 24 10 9 43 43 H 1.08996 * 109.49999 * 58.58258 * 25 8 7 44 44 H 1.08998 * 109.49805 * 178.68279 * 25 8 7 45 45 H 1.09000 * 109.58404 * 246.15660 * 26 5 3 46 46 H 1.08996 * 109.58820 * 6.58490 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6673 -0.0005 6 6 3.8622 3.0470 0.0000 7 6 4.8388 3.2151 -1.1683 8 6 5.9301 2.1464 -1.0735 9 7 6.8845 2.3248 -2.1706 10 6 8.1957 1.8621 -2.0378 11 6 8.5961 1.2328 -0.8648 12 6 9.8930 0.7755 -0.7327 13 6 10.7943 0.9369 -1.7675 14 6 10.4021 1.5702 -2.9400 15 8 11.2901 1.7333 -3.9538 16 6 10.8152 2.2459 -5.1069 17 1 9.7906 2.5820 -5.1669 18 6 11.6421 2.3413 -6.2157 19 7 12.8904 1.9322 -6.1424 20 14 10.9840 3.0508 -7.8135 21 1 10.5278 4.4454 -7.5850 22 1 12.0589 3.0437 -8.8381 23 1 9.8423 2.2279 -8.2873 24 6 9.1001 2.0302 -3.0765 25 6 5.2958 0.7571 -1.1704 26 6 4.3243 0.5611 -0.0017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 4.3781 3.2470 0.9392 33 1 3.0309 3.7426 -0.1156 34 1 5.2936 4.2046 -1.1227 35 1 4.3018 3.1040 -2.1103 36 1 6.4504 2.2422 -0.1204 37 1 6.6058 2.7641 -2.9892 38 1 7.8927 1.1013 -0.0559 39 1 10.2019 0.2872 0.1798 40 1 11.8062 0.5741 -1.6629 41 1 13.4690 1.9993 -6.9180 42 1 8.7915 2.5184 -3.9890 43 1 4.7544 0.6692 -2.1123 44 1 6.0759 -0.0029 -1.1262 45 1 4.8778 0.5587 0.9374 46 1 3.7968 -0.3853 -0.1197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779589170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:29 Heat of formation + Delta-G solvation = -62.012574 kcal Electronic energy + Delta-G solvation = -26213.813444 eV Core-core repulsion = 22488.778746 eV Total energy + Delta-G solvation = -3725.034698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35793 -40.70843 -39.30165 -37.98453 -35.85864 -34.23834 -33.96092 -32.64419 -31.98732 -30.49480 -29.40973 -27.25421 -26.33044 -24.94925 -23.92924 -23.36708 -22.38677 -21.51081 -19.99427 -19.63844 -18.95021 -18.31397 -17.17865 -16.83685 -16.80405 -16.64021 -16.33068 -15.96997 -15.53458 -15.45844 -15.21051 -15.10960 -14.81420 -14.50693 -14.33393 -14.02409 -13.78526 -13.51354 -13.48111 -13.26584 -13.04446 -12.93878 -12.70449 -12.59023 -12.44398 -12.23794 -12.17847 -12.03580 -11.99105 -11.92634 -11.58855 -11.26070 -10.95053 -10.78385 -10.55611 -9.71272 -9.07925 -8.44458 -8.20707 -6.12534 0.79947 0.95211 1.33873 1.45356 1.50070 1.61554 2.01133 2.18652 2.51440 2.90741 3.29178 3.52746 3.62439 3.74498 3.85849 4.03489 4.08682 4.18771 4.25322 4.25938 4.30972 4.39007 4.47744 4.50256 4.65353 4.67561 4.75903 4.79142 4.81208 4.86068 4.97897 5.00722 5.02923 5.06247 5.14048 5.17368 5.18930 5.31843 5.33789 5.50006 5.55456 5.78418 5.84388 6.06248 6.14618 6.39023 6.64295 6.86082 7.00992 7.16561 7.85191 8.78936 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.002532 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.025362 B =11057.359034 C =11842.306314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.505 3.495 4 O -0.592 6.592 5 N -0.613 5.613 6 C 0.116 3.884 7 C -0.132 4.132 8 C 0.156 3.844 9 N -0.741 5.741 10 C 0.260 3.740 11 C -0.259 4.259 12 C -0.026 4.026 13 C -0.263 4.263 14 C 0.150 3.850 15 O -0.234 6.234 16 C -0.409 4.409 17 H 0.098 0.902 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.017 2.983 21 H -0.259 1.259 22 H -0.272 1.272 23 H -0.258 1.258 24 C -0.318 4.318 25 C -0.147 4.147 26 C 0.111 3.889 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.396 0.604 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.103 0.897 41 H 0.272 0.728 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.919 -4.415 14.481 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.296 3.704 4 O -0.473 6.473 5 N -0.345 5.345 6 C -0.007 4.007 7 C -0.171 4.171 8 C 0.051 3.949 9 N -0.370 5.370 10 C 0.156 3.844 11 C -0.282 4.282 12 C -0.044 4.044 13 C -0.284 4.284 14 C 0.099 3.901 15 O -0.140 6.140 16 C -0.485 4.485 17 H 0.115 0.885 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.836 3.164 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.183 1.183 24 C -0.342 4.342 25 C -0.187 4.187 26 C -0.012 4.012 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.230 0.770 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.012 -4.030 14.516 26.673 hybrid contribution 0.306 0.755 -1.566 1.765 sum -21.706 -3.275 12.950 25.487 Atomic orbital electron populations 1.21539 0.93677 1.02562 1.01743 1.21748 0.98024 0.91822 1.06370 1.21498 0.81581 0.92946 0.74419 1.90671 1.56021 1.48339 1.52251 1.48323 1.05794 1.07830 1.72591 1.21503 0.97223 0.83454 0.98538 1.22088 0.96068 0.99667 0.99236 1.20963 0.88574 0.94574 0.90799 1.44772 1.07235 1.65616 1.19358 1.17515 0.84161 0.90253 0.92457 1.20578 0.97741 1.11622 0.98233 1.20846 0.92013 0.94879 0.96672 1.20275 1.01553 1.11945 0.94636 1.19671 0.89103 0.92191 0.89105 1.83946 1.35371 1.73974 1.20726 1.21713 0.98862 1.40969 0.86966 0.88465 1.26559 0.95478 0.97591 1.02553 1.70185 1.06999 1.46670 1.32185 0.84675 0.78023 0.78882 0.74784 1.18331 1.19605 1.18285 1.20518 0.94513 1.17274 1.01926 1.22410 0.99182 0.97896 0.99191 1.21973 0.90317 0.89846 0.99042 0.93394 0.93888 0.89727 0.86985 0.86170 0.89581 0.90329 0.89688 0.91959 0.89312 0.76962 0.83476 0.82954 0.87829 0.91942 0.87235 0.92172 0.89848 0.88892 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.20 71.98 0.66 -1.02 16 2 C -0.14 -1.40 4.77 29.85 0.14 -1.26 16 3 C 0.50 9.06 7.70 87.66 0.67 9.74 16 4 O -0.59 -16.03 15.40 -3.04 -0.05 -16.07 16 5 N -0.61 -8.80 2.97 -818.82 -2.43 -11.23 16 6 C 0.12 1.77 6.43 86.37 0.56 2.33 16 7 C -0.13 -2.07 5.55 30.67 0.17 -1.90 16 8 C 0.16 2.67 2.11 45.01 0.09 2.76 16 9 N -0.74 -18.40 5.25 -318.88 -1.67 -20.07 16 10 C 0.26 8.62 6.63 38.20 0.25 8.87 16 11 C -0.26 -7.51 8.84 22.43 0.20 -7.31 16 12 C -0.03 -0.82 10.03 22.23 0.22 -0.60 16 13 C -0.26 -11.33 9.99 22.42 0.22 -11.11 16 14 C 0.15 7.62 6.64 22.56 0.15 7.77 16 15 O -0.23 -14.36 9.76 -22.78 -0.22 -14.59 16 16 C -0.41 -24.21 9.49 67.92 0.64 -23.57 16 17 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 18 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 19 N -0.92 -57.37 13.67 21.61 0.30 -57.08 16 20 Si 1.02 43.49 29.55 68.60 2.03 45.51 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 C -0.32 -13.92 9.01 22.52 0.20 -13.71 16 25 C -0.15 -2.08 5.59 30.68 0.17 -1.91 16 26 C 0.11 1.00 6.34 86.38 0.55 1.55 16 27 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 28 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 0.74 7.69 -2.39 -0.02 0.72 16 31 H 0.12 0.58 7.94 -2.39 -0.02 0.56 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.51 7.01 -2.38 -0.02 1.49 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.44 6.48 -2.38 -0.02 1.42 16 37 H 0.40 9.76 8.61 -92.71 -0.80 8.96 16 38 H 0.15 3.06 6.13 -2.91 -0.02 3.04 16 39 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 40 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.11 4.97 5.64 -2.91 -0.02 4.96 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.29 7.72 -2.39 -0.02 1.27 16 45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.11 0.52 5.93 -2.39 -0.01 0.51 16 Total: -1.00 -79.28 369.57 3.53 -75.75 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.20 Total: 28.10 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 5.38 Total: -30.32 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -3.81 Total: -88.38 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.27 Total: -30.66 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -79.28 3.53 -75.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779589170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.737 kcal (2) G-P(sol) polarization free energy of solvation -79.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds