Wall clock time and date at job start Tue Mar 31 2020 14:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 O 1.42903 * 109.47111 * 119.99474 * 2 1 3 5 5 C 1.35756 * 116.99827 * 85.25865 * 4 2 1 6 6 C 1.38679 * 120.07453 * 354.54029 * 5 4 2 7 7 C 1.38007 * 120.16925 * 180.27144 * 6 5 4 8 8 C 1.39124 * 120.31752 * 359.49237 * 7 6 5 9 9 N 1.39961 * 119.92767 * 180.27463 * 8 7 6 10 10 C 1.46503 * 120.00041 * 0.23276 * 9 8 7 11 11 C 1.52998 * 109.46984 * 181.73970 * 10 9 8 12 12 C 1.50699 * 115.55081 * 56.29590 * 11 10 9 13 13 H 1.08002 * 119.99992 * 265.93214 * 12 11 10 14 14 C 1.37878 * 120.00142 * 85.93294 * 12 11 10 15 15 N 1.31515 * 120.00068 * 354.02207 * 14 12 11 16 16 Si 1.86801 * 120.00267 * 174.02838 * 14 12 11 17 17 H 1.48491 * 109.47300 * 89.99487 * 16 14 12 18 18 H 1.48500 * 109.47313 * 209.99998 * 16 14 12 19 19 H 1.48504 * 109.46492 * 329.99520 * 16 14 12 20 20 C 1.52991 * 117.49840 * 270.62107 * 11 10 9 21 21 C 1.53005 * 117.49649 * 201.96131 * 11 10 9 22 22 C 1.38402 * 120.14312 * 0.50355 * 8 7 6 23 23 C 1.39700 * 119.83168 * 359.75245 * 22 8 7 24 24 C 1.47554 * 120.15558 * 180.02562 * 23 22 8 25 25 N 1.34771 * 119.99729 * 359.97438 * 24 23 22 26 26 O 1.21585 * 119.99519 * 179.97438 * 24 23 22 27 27 H 1.08996 * 109.47243 * 300.00468 * 1 2 3 28 28 H 1.09006 * 109.47110 * 60.00502 * 1 2 3 29 29 H 1.08999 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47243 * 239.99532 * 2 1 3 31 31 H 1.09002 * 109.47072 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46575 * 299.99755 * 3 2 1 33 33 H 1.08996 * 109.47459 * 59.99664 * 3 2 1 34 34 H 1.08002 * 119.91784 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.84379 * 179.74082 * 7 6 5 36 36 H 0.96998 * 120.00073 * 180.22421 * 9 8 7 37 37 H 1.08999 * 109.46697 * 301.73693 * 10 9 8 38 38 H 1.09000 * 109.47085 * 61.73761 * 10 9 8 39 39 H 0.96997 * 120.00226 * 185.09652 * 15 14 12 40 40 H 1.09006 * 117.50324 * 0.02562 * 20 11 10 41 41 H 1.09004 * 117.49794 * 145.02268 * 20 11 10 42 42 H 1.09000 * 117.49899 * 214.98034 * 21 11 10 43 43 H 1.08996 * 117.49640 * 359.97438 * 21 11 10 44 44 H 1.08001 * 120.08549 * 179.72127 * 22 8 7 45 45 H 0.96995 * 120.00533 * 359.97438 * 25 24 23 46 46 H 0.97000 * 119.99461 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1175 -2.0247 1.0963 6 6 1.6700 -2.7010 -0.0287 7 6 1.7770 -4.0751 -0.1001 8 6 2.3433 -4.7910 0.9498 9 7 2.4529 -6.1838 0.8663 10 6 1.9762 -6.8858 -0.3280 11 6 2.1720 -8.3922 -0.1462 12 6 1.5184 -8.9902 1.0730 13 1 2.0824 -9.1039 1.9870 14 6 0.2005 -9.3920 1.0216 15 7 -0.5203 -9.1472 -0.0509 16 14 -0.5614 -10.2841 2.4753 17 1 -1.1587 -9.2934 3.4063 18 1 -1.6183 -11.2078 1.9906 19 1 0.4873 -11.0603 3.1845 20 6 3.5053 -8.9910 -0.5983 21 6 2.2338 -9.2541 -1.4089 22 6 2.7942 -4.1293 2.0787 23 6 2.6841 -2.7390 2.1597 24 6 3.1630 -2.0262 3.3597 25 7 3.7077 -2.7166 4.3810 26 8 3.0662 -0.8161 3.4269 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9562 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.2323 -2.1515 -0.8490 35 1 1.4230 -4.5968 -0.9769 36 1 2.8446 -6.6842 1.5991 37 1 0.9177 -6.6722 -0.4766 38 1 2.5405 -6.5483 -1.1973 39 1 -1.4659 -9.3630 -0.0594 40 1 4.2433 -8.3116 -1.0249 41 1 3.9097 -9.8176 -0.0141 42 1 1.8021 -10.2536 -1.3577 43 1 2.1345 -8.7478 -2.3690 44 1 3.2296 -4.6864 2.8951 45 1 3.7846 -3.6820 4.3274 46 1 4.0222 -2.2480 5.1699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849317441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:23 Heat of formation + Delta-G solvation = -29.731540 kcal Electronic energy + Delta-G solvation = -26650.104108 eV Core-core repulsion = 22926.469221 eV Total energy + Delta-G solvation = -3723.634887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.37742 -38.69068 -38.06369 -36.69653 -34.00306 -33.61840 -32.64361 -32.03991 -30.71862 -28.48698 -27.32311 -25.74105 -25.02511 -23.69340 -22.75785 -21.23033 -20.64122 -20.08366 -19.30240 -18.40984 -17.21455 -16.71481 -16.34699 -15.66299 -15.36362 -15.18205 -14.75740 -14.72213 -14.46353 -14.30452 -13.90531 -13.61358 -13.38924 -13.03760 -12.98170 -12.70267 -12.49364 -12.36419 -12.13702 -12.03222 -11.67776 -11.58113 -11.21717 -11.04905 -11.04392 -10.74408 -10.65589 -10.55414 -10.31756 -9.70617 -9.62848 -9.54396 -9.17875 -8.89167 -8.78065 -8.55205 -8.25421 -6.59421 -6.15329 -4.23403 1.11348 1.88070 3.20490 3.21149 3.29321 3.30956 3.40941 3.67349 4.11422 4.19370 4.30567 4.75200 4.88040 4.93436 5.01373 5.08459 5.13536 5.23784 5.36210 5.46148 5.52626 5.58999 5.67671 5.72879 5.80585 5.90893 6.00491 6.04626 6.11611 6.15545 6.23643 6.34078 6.43725 6.55228 6.60497 6.62187 6.68978 6.88042 6.90082 6.99843 7.31057 7.38193 7.45686 7.73808 7.74333 8.00432 8.27354 8.46548 8.48349 8.77072 9.43858 10.92483 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.003259 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.844959 B = 8589.416901 C = 9071.820696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 C -0.145 4.145 4 O -0.282 6.282 5 C 0.115 3.885 6 C -0.169 4.169 7 C -0.132 4.132 8 C 0.197 3.803 9 N -0.719 5.719 10 C 0.166 3.834 11 C 0.031 3.969 12 C -0.498 4.498 13 H 0.059 0.941 14 C 0.076 3.924 15 N -0.876 5.876 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.211 4.211 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.130 4.130 24 C 0.567 3.433 25 N -0.858 5.858 26 O -0.529 6.529 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.402 0.598 37 H 0.064 0.936 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.126 0.874 45 H 0.400 0.600 46 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.281 13.317 0.380 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.016 3.984 3 C -0.202 4.202 4 O -0.195 6.195 5 C 0.066 3.934 6 C -0.188 4.188 7 C -0.156 4.156 8 C 0.090 3.910 9 N -0.345 5.345 10 C 0.042 3.958 11 C 0.030 3.970 12 C -0.536 4.536 13 H 0.077 0.923 14 C -0.128 4.128 15 N -0.512 5.512 16 Si 0.716 3.284 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.248 4.248 21 C -0.187 4.187 22 C -0.169 4.169 23 C -0.135 4.135 24 C 0.354 3.646 25 N -0.422 5.422 26 O -0.405 6.405 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.237 0.763 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.144 0.856 45 H 0.230 0.770 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.918 14.035 0.098 14.872 hybrid contribution -0.448 -1.272 1.027 1.695 sum 4.469 12.763 1.125 13.570 Atomic orbital electron populations 1.22384 0.95451 1.03139 1.02738 1.22390 0.94143 0.93802 0.88110 1.21794 1.02003 0.93833 1.02546 1.86352 1.80716 1.15628 1.36804 1.18586 0.98014 0.82959 0.93820 1.20985 1.04992 0.94774 0.98063 1.20701 1.02483 0.93176 0.99209 1.17729 0.94806 0.85211 0.93288 1.44814 1.66533 1.01428 1.21751 1.20936 0.97949 0.92502 0.84380 1.18961 0.93748 0.89003 0.95297 1.20301 0.96335 1.41023 0.95940 0.92298 1.24954 0.97264 0.95083 0.95548 1.69956 1.06866 1.46812 1.27536 0.86647 0.79106 0.79925 0.82699 1.20611 1.21162 1.19831 1.23049 0.91652 1.03820 1.06287 1.22481 0.99748 1.01808 0.94671 1.20430 1.06173 0.91982 0.98334 1.18835 1.07327 0.92505 0.94798 1.18107 0.76862 0.86825 0.82845 1.43785 1.65954 1.11809 1.20697 1.90825 1.55472 1.13556 1.80677 0.91551 0.91424 0.91728 0.91275 0.91834 0.91051 0.91539 0.85223 0.85363 0.76307 0.91808 0.95471 0.92876 0.91652 0.90441 0.89845 0.91785 0.85602 0.77049 0.77034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.18 37.16 0.34 -1.55 16 2 C 0.07 0.85 2.84 -26.73 -0.08 0.77 16 3 C -0.14 -1.44 9.56 37.16 0.36 -1.08 16 4 O -0.28 -4.45 7.86 -40.91 -0.32 -4.77 16 5 C 0.11 1.82 6.61 -38.73 -0.26 1.57 16 6 C -0.17 -2.45 8.24 -39.50 -0.33 -2.78 16 7 C -0.13 -2.09 9.30 -39.34 -0.37 -2.45 16 8 C 0.20 3.22 6.65 -83.76 -0.56 2.66 16 9 N -0.72 -12.79 5.57 -58.63 -0.33 -13.12 16 10 C 0.17 3.33 4.79 -4.04 -0.02 3.31 16 11 C 0.03 0.67 1.50 -155.66 -0.23 0.44 16 12 C -0.50 -12.27 8.26 -34.44 -0.28 -12.56 16 13 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 14 C 0.08 1.93 5.39 -17.82 -0.10 1.83 16 15 N -0.88 -23.25 12.88 55.43 0.71 -22.54 16 16 Si 0.89 20.04 29.55 -169.99 -5.02 15.01 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 C -0.21 -4.18 9.93 -26.70 -0.27 -4.45 16 21 C -0.15 -3.22 9.40 -26.69 -0.25 -3.47 16 22 C -0.14 -2.12 9.38 -38.98 -0.37 -2.49 16 23 C -0.13 -2.04 5.88 -104.86 -0.62 -2.65 16 24 C 0.57 8.72 8.04 -12.46 -0.10 8.62 16 25 N -0.86 -9.23 8.82 30.46 0.27 -8.96 16 26 O -0.53 -9.90 15.98 -16.64 -0.27 -10.17 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.73 6.94 -51.93 -0.36 0.37 16 30 H 0.07 0.74 6.29 -51.93 -0.33 0.42 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.13 1.58 5.43 -52.49 -0.28 1.30 16 35 H 0.13 1.99 6.71 -52.49 -0.35 1.63 16 36 H 0.40 7.02 8.13 -40.82 -0.33 6.69 16 37 H 0.06 1.43 7.85 -51.93 -0.41 1.03 16 38 H 0.03 0.51 7.99 -51.93 -0.42 0.09 16 39 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.13 1.50 6.40 -52.49 -0.34 1.16 16 45 H 0.40 3.44 6.86 -40.82 -0.28 3.16 16 46 H 0.40 3.57 8.93 -40.82 -0.36 3.21 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -29.90 377.88 -9.19 -39.09 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -6.81 Total: 14.04 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -3.12 Total: -14.27 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.66 Total: -44.63 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.59 Total: -14.94 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.90 -9.19 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849317441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.358 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds