Wall clock time and date at job start Tue Mar 31 2020 14:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 O 1.42903 * 109.47111 * 119.99474 * 2 1 3 5 5 C 1.35756 * 116.99827 * 85.25865 * 4 2 1 6 6 C 1.38679 * 120.07453 * 354.54029 * 5 4 2 7 7 C 1.38007 * 120.16925 * 180.27144 * 6 5 4 8 8 C 1.39124 * 120.31752 * 359.49237 * 7 6 5 9 9 N 1.39961 * 119.92767 * 180.27463 * 8 7 6 10 10 C 1.46503 * 120.00041 * 0.23276 * 9 8 7 11 11 C 1.52998 * 109.46984 * 181.73970 * 10 9 8 12 12 C 1.50699 * 115.55081 * 56.29590 * 11 10 9 13 13 H 1.08002 * 119.99992 * 265.93214 * 12 11 10 14 14 C 1.37878 * 120.00142 * 85.93294 * 12 11 10 15 15 N 1.31515 * 120.00068 * 354.02207 * 14 12 11 16 16 Si 1.86801 * 120.00267 * 174.02838 * 14 12 11 17 17 H 1.48491 * 109.47300 * 89.99487 * 16 14 12 18 18 H 1.48500 * 109.47313 * 209.99998 * 16 14 12 19 19 H 1.48504 * 109.46492 * 329.99520 * 16 14 12 20 20 C 1.52991 * 117.49840 * 270.62107 * 11 10 9 21 21 C 1.53005 * 117.49649 * 201.96131 * 11 10 9 22 22 C 1.38402 * 120.14312 * 0.50355 * 8 7 6 23 23 C 1.39700 * 119.83168 * 359.75245 * 22 8 7 24 24 C 1.47554 * 120.15558 * 180.02562 * 23 22 8 25 25 N 1.34771 * 119.99729 * 359.97438 * 24 23 22 26 26 O 1.21585 * 119.99519 * 179.97438 * 24 23 22 27 27 H 1.08996 * 109.47243 * 300.00468 * 1 2 3 28 28 H 1.09006 * 109.47110 * 60.00502 * 1 2 3 29 29 H 1.08999 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47243 * 239.99532 * 2 1 3 31 31 H 1.09002 * 109.47072 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46575 * 299.99755 * 3 2 1 33 33 H 1.08996 * 109.47459 * 59.99664 * 3 2 1 34 34 H 1.08002 * 119.91784 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.84379 * 179.74082 * 7 6 5 36 36 H 0.96998 * 120.00073 * 180.22421 * 9 8 7 37 37 H 1.08999 * 109.46697 * 301.73693 * 10 9 8 38 38 H 1.09000 * 109.47085 * 61.73761 * 10 9 8 39 39 H 0.96997 * 120.00226 * 185.09652 * 15 14 12 40 40 H 1.09006 * 117.50324 * 0.02562 * 20 11 10 41 41 H 1.09004 * 117.49794 * 145.02268 * 20 11 10 42 42 H 1.09000 * 117.49899 * 214.98034 * 21 11 10 43 43 H 1.08996 * 117.49640 * 359.97438 * 21 11 10 44 44 H 1.08001 * 120.08549 * 179.72127 * 22 8 7 45 45 H 0.96995 * 120.00533 * 359.97438 * 25 24 23 46 46 H 0.97000 * 119.99461 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1175 -2.0247 1.0963 6 6 1.6700 -2.7010 -0.0287 7 6 1.7770 -4.0751 -0.1001 8 6 2.3433 -4.7910 0.9498 9 7 2.4529 -6.1838 0.8663 10 6 1.9762 -6.8858 -0.3280 11 6 2.1720 -8.3922 -0.1462 12 6 1.5184 -8.9902 1.0730 13 1 2.0824 -9.1039 1.9870 14 6 0.2005 -9.3920 1.0216 15 7 -0.5203 -9.1472 -0.0509 16 14 -0.5614 -10.2841 2.4753 17 1 -1.1587 -9.2934 3.4063 18 1 -1.6183 -11.2078 1.9906 19 1 0.4873 -11.0603 3.1845 20 6 3.5053 -8.9910 -0.5983 21 6 2.2338 -9.2541 -1.4089 22 6 2.7942 -4.1293 2.0787 23 6 2.6841 -2.7390 2.1597 24 6 3.1630 -2.0262 3.3597 25 7 3.7077 -2.7166 4.3810 26 8 3.0662 -0.8161 3.4269 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9562 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.2323 -2.1515 -0.8490 35 1 1.4230 -4.5968 -0.9769 36 1 2.8446 -6.6842 1.5991 37 1 0.9177 -6.6722 -0.4766 38 1 2.5405 -6.5483 -1.1973 39 1 -1.4659 -9.3630 -0.0594 40 1 4.2433 -8.3116 -1.0249 41 1 3.9097 -9.8176 -0.0141 42 1 1.8021 -10.2536 -1.3577 43 1 2.1345 -8.7478 -2.3690 44 1 3.2296 -4.6864 2.8951 45 1 3.7846 -3.6820 4.3274 46 1 4.0222 -2.2480 5.1699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849317441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:22 Heat of formation + Delta-G solvation = -47.559720 kcal Electronic energy + Delta-G solvation = -26650.877196 eV Core-core repulsion = 22926.469221 eV Total energy + Delta-G solvation = -3724.407975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53195 -39.83097 -39.39780 -38.20955 -35.29083 -34.69212 -33.96154 -33.67823 -31.86541 -29.79445 -28.16205 -27.55676 -26.46225 -24.92905 -23.85533 -22.87604 -21.69956 -21.34294 -20.92227 -19.51124 -18.33955 -18.17252 -17.66192 -17.07511 -16.57474 -16.42168 -16.36782 -15.89059 -15.82267 -15.48777 -15.35809 -14.82176 -14.68959 -14.34977 -14.16411 -14.06969 -13.59903 -13.48431 -13.26974 -13.14273 -13.03450 -12.87227 -12.86202 -12.71791 -12.36158 -12.24287 -12.01581 -11.80332 -11.62452 -11.36445 -10.91602 -10.82451 -10.60931 -10.41905 -10.28058 -9.99730 -9.91897 -8.08747 -7.88283 -6.19115 -0.07659 0.67615 1.41394 1.45482 1.51835 2.00539 2.39077 2.43002 2.59979 2.80634 2.98926 3.21358 3.57835 3.83920 3.85530 3.92682 4.04944 4.21221 4.23950 4.31719 4.40534 4.52654 4.59850 4.68191 4.70823 4.74501 4.83013 4.84717 4.88102 4.90230 5.01295 5.04086 5.10378 5.23514 5.28724 5.31167 5.37224 5.40774 5.60362 5.66474 5.70609 5.80487 5.97643 6.38464 6.46901 6.58536 6.71465 6.86589 7.14063 7.41448 7.49673 8.98833 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.003259 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.844959 B = 8589.416901 C = 9071.820696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 C -0.141 4.141 4 O -0.304 6.304 5 C 0.107 3.893 6 C -0.165 4.165 7 C -0.140 4.140 8 C 0.177 3.823 9 N -0.722 5.722 10 C 0.184 3.816 11 C 0.009 3.991 12 C -0.501 4.501 13 H 0.057 0.943 14 C 0.031 3.969 15 N -0.904 5.904 16 Si 0.941 3.059 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.268 1.268 20 C -0.184 4.184 21 C -0.159 4.159 22 C -0.131 4.131 23 C -0.147 4.147 24 C 0.564 3.436 25 N -0.834 5.834 26 O -0.569 6.569 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.151 0.849 35 H 0.127 0.873 36 H 0.403 0.597 37 H 0.032 0.968 38 H 0.040 0.960 39 H 0.258 0.742 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.153 0.847 45 H 0.413 0.587 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.210 13.950 0.644 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.004 3.996 3 C -0.198 4.198 4 O -0.217 6.217 5 C 0.058 3.942 6 C -0.184 4.184 7 C -0.163 4.163 8 C 0.072 3.928 9 N -0.350 5.350 10 C 0.059 3.941 11 C 0.009 3.991 12 C -0.539 4.539 13 H 0.075 0.925 14 C -0.170 4.170 15 N -0.542 5.542 16 Si 0.768 3.232 17 H -0.207 1.207 18 H -0.217 1.217 19 H -0.192 1.192 20 C -0.221 4.221 21 C -0.197 4.197 22 C -0.155 4.155 23 C -0.151 4.151 24 C 0.351 3.649 25 N -0.400 5.400 26 O -0.449 6.449 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.169 0.831 35 H 0.145 0.855 36 H 0.238 0.762 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.170 0.830 45 H 0.245 0.755 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.876 14.656 0.401 15.796 hybrid contribution -0.703 -1.400 0.954 1.834 sum 5.173 13.256 1.355 14.295 Atomic orbital electron populations 1.22357 0.94529 1.02694 1.03680 1.22742 0.94976 0.94499 0.87346 1.21818 1.01596 0.92829 1.03555 1.86348 1.80906 1.15575 1.38906 1.18878 0.97696 0.83420 0.94184 1.21128 1.04540 0.94327 0.98384 1.20822 1.02514 0.93726 0.99218 1.17884 0.96011 0.84650 0.94257 1.44596 1.67345 1.01874 1.21235 1.20553 0.96327 0.91361 0.85828 1.19052 0.95426 0.90076 0.94565 1.20601 0.96316 1.40158 0.96779 0.92457 1.25561 0.98008 0.96001 0.97446 1.70060 1.06767 1.48332 1.29009 0.85818 0.78241 0.78799 0.80330 1.20677 1.21693 1.19244 1.23024 0.91004 1.03457 1.04586 1.22411 1.01350 1.00639 0.95331 1.20619 1.04842 0.91638 0.98369 1.19065 1.07858 0.92962 0.95251 1.18156 0.76898 0.86406 0.83481 1.43570 1.64068 1.12444 1.19874 1.90804 1.57452 1.15158 1.81520 0.92426 0.88666 0.92818 0.90164 0.92483 0.88051 0.92474 0.83142 0.85502 0.76202 0.95010 0.94160 0.93325 0.89191 0.90429 0.92344 0.90675 0.82971 0.75511 0.75691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.44 9.18 71.98 0.66 -2.78 16 2 C 0.06 1.34 2.84 30.59 0.09 1.43 16 3 C -0.14 -2.60 9.56 71.98 0.69 -1.91 16 4 O -0.30 -9.47 7.86 -69.85 -0.55 -10.02 16 5 C 0.11 3.32 6.61 22.82 0.15 3.47 16 6 C -0.16 -4.63 8.24 22.32 0.18 -4.44 16 7 C -0.14 -4.30 9.30 22.43 0.21 -4.09 16 8 C 0.18 5.61 6.65 38.09 0.25 5.86 16 9 N -0.72 -24.95 5.57 -339.41 -1.89 -26.84 16 10 C 0.18 7.26 4.79 86.38 0.41 7.68 16 11 C 0.01 0.41 1.50 -52.93 -0.08 0.33 16 12 C -0.50 -24.46 8.26 25.60 0.21 -24.25 16 13 H 0.06 2.75 7.82 -2.91 -0.02 2.73 16 14 C 0.03 1.57 5.39 84.65 0.46 2.02 16 15 N -0.90 -48.68 12.88 21.45 0.28 -48.41 16 16 Si 0.94 41.18 29.55 68.60 2.03 43.20 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 20 C -0.18 -6.94 9.93 30.62 0.30 -6.64 16 21 C -0.16 -6.81 9.40 30.62 0.29 -6.52 16 22 C -0.13 -3.62 9.38 22.66 0.21 -3.41 16 23 C -0.15 -4.45 5.88 -20.02 -0.12 -4.56 16 24 C 0.56 16.78 8.04 86.70 0.70 17.48 16 25 N -0.83 -16.32 8.82 -175.81 -1.55 -17.87 16 26 O -0.57 -21.22 15.98 16.99 0.27 -20.95 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.05 1.16 6.94 -2.39 -0.02 1.14 16 30 H 0.08 1.58 6.29 -2.39 -0.02 1.57 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.15 3.45 5.43 -2.91 -0.02 3.44 16 35 H 0.13 3.89 6.71 -2.91 -0.02 3.87 16 36 H 0.40 13.52 8.13 -92.71 -0.75 12.77 16 37 H 0.03 1.45 7.85 -2.39 -0.02 1.43 16 38 H 0.04 1.46 7.99 -2.39 -0.02 1.44 16 39 H 0.26 13.51 8.32 -92.71 -0.77 12.74 16 40 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 41 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 42 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 44 H 0.15 3.23 6.40 -2.91 -0.02 3.22 16 45 H 0.41 6.01 6.86 -92.71 -0.64 5.37 16 46 H 0.41 6.52 8.93 -92.71 -0.83 5.69 16 Total: -1.00 -64.59 377.88 2.01 -62.58 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -1.19 Total: 38.63 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 4.62 Total: -20.33 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -3.17 Total: -93.11 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.28 Total: -30.97 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Total: -64.59 2.01 -62.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849317441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.023 kcal (2) G-P(sol) polarization free energy of solvation -64.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds