Wall clock time and date at job start Tue Mar 31 2020 14:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46504 * 2 1 4 4 O 1.21315 * 120.00449 * 0.02562 * 3 2 1 5 5 C 1.46650 * 119.99564 * 180.02562 * 3 2 1 6 6 C 1.40060 * 120.24469 * 5.74168 * 5 3 2 7 7 C 1.37624 * 119.90086 * 179.97438 * 6 5 3 8 8 C 1.38698 * 120.39431 * 0.02562 * 7 6 5 9 9 C 1.37938 * 120.49521 * 0.02562 * 8 7 6 10 10 C 1.38966 * 120.08312 * 359.96302 * 9 8 7 11 11 N 1.38694 * 120.19130 * 179.97438 * 10 9 8 12 12 C 1.46496 * 120.00407 * 354.47378 * 11 10 9 13 13 C 1.50703 * 109.47709 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99637 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00564 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99769 * 359.97438 * 15 13 12 17 17 C 1.53011 * 109.47081 * 90.00248 * 16 15 13 18 18 C 1.46501 * 120.00234 * 179.97438 * 15 13 12 19 19 C 1.50698 * 109.46974 * 90.00181 * 18 15 13 20 20 H 1.08003 * 119.99796 * 0.02562 * 19 18 15 21 21 C 1.37872 * 120.00191 * 180.02562 * 19 18 15 22 22 N 1.31522 * 119.99961 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00384 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47139 * 89.99743 * 23 21 19 25 25 H 1.48498 * 109.47247 * 210.00185 * 23 21 19 26 26 H 1.48502 * 109.46842 * 330.00136 * 23 21 19 27 27 H 1.09002 * 109.46699 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47533 * 299.99406 * 1 2 3 29 29 H 1.08994 * 109.47551 * 60.00139 * 1 2 3 30 30 H 1.08999 * 109.47030 * 240.00462 * 2 1 3 31 31 H 1.08991 * 109.47055 * 120.00004 * 2 1 3 32 32 H 1.07999 * 120.05005 * 0.25319 * 6 5 3 33 33 H 1.08000 * 119.80440 * 179.97438 * 7 6 5 34 34 H 1.07999 * 119.75504 * 179.97438 * 8 7 6 35 35 H 1.07995 * 119.96163 * 179.97438 * 9 8 7 36 36 H 0.97001 * 120.00135 * 174.48339 * 11 10 9 37 37 H 1.08996 * 109.47535 * 300.00432 * 12 11 10 38 38 H 1.09003 * 109.47479 * 60.00397 * 12 11 10 39 39 H 1.09004 * 109.47194 * 209.99767 * 16 15 13 40 40 H 1.08997 * 109.47589 * 330.00444 * 16 15 13 41 41 H 1.08995 * 109.47206 * 180.02562 * 17 16 15 42 42 H 1.09004 * 109.46714 * 299.99813 * 17 16 15 43 43 H 1.08997 * 109.46749 * 59.99682 * 17 16 15 44 44 H 1.08997 * 109.47060 * 210.00171 * 18 15 13 45 45 H 1.08994 * 109.47135 * 330.00125 * 18 15 13 46 46 H 0.96999 * 119.99856 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2438 2.3430 0.0005 5 6 3.4740 1.6889 -0.0006 6 6 4.3876 0.6343 -0.1222 7 6 5.7391 0.8939 -0.1224 8 6 6.2037 2.1952 -0.0023 9 6 5.3185 3.2461 0.1195 10 6 3.9495 3.0070 0.1218 11 7 3.0575 4.0619 0.2447 12 6 3.5553 5.4170 0.4936 13 6 2.3920 6.3707 0.5855 14 8 1.2586 5.9588 0.4562 15 7 2.6110 7.6811 0.8113 16 6 3.9800 8.1786 0.9680 17 6 4.5351 8.5836 -0.3991 18 6 1.4801 8.6082 0.9000 19 6 1.0151 8.6978 2.3307 20 1 1.5125 8.1220 3.0972 21 6 -0.0453 9.5146 2.6611 22 7 -0.6507 10.2162 1.7277 23 14 -0.6222 9.6251 4.4343 24 1 0.1113 10.7151 5.1265 25 1 -2.0789 9.9122 4.4640 26 1 -0.3576 8.3359 5.1222 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.0319 -0.3808 -0.2201 33 1 6.4422 0.0794 -0.2158 34 1 7.2665 2.3872 -0.0033 35 1 5.6897 4.2559 0.2129 36 1 2.1039 3.9024 0.1658 37 1 4.1126 5.4331 1.4302 38 1 4.2098 5.7196 -0.3238 39 1 3.9785 9.0442 1.6305 40 1 4.6048 7.3946 1.3960 41 1 5.5538 8.9533 -0.2826 42 1 4.5366 7.7180 -1.0616 43 1 3.9104 9.3676 -0.8271 44 1 1.7913 9.5948 0.5567 45 1 0.6640 8.2466 0.2747 46 1 -1.3965 10.7911 1.9602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863365975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:20 Heat of formation + Delta-G solvation = -45.988107 kcal Electronic energy + Delta-G solvation = -26634.964921 eV Core-core repulsion = 22910.625096 eV Total energy + Delta-G solvation = -3724.339825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.46132 -39.20464 -38.21068 -35.72449 -35.09363 -33.01625 -32.81202 -31.28762 -30.23945 -29.95640 -27.82259 -26.17928 -25.11259 -23.33214 -23.07379 -22.45494 -21.30950 -19.85934 -18.47227 -17.56202 -17.04981 -16.47135 -16.09474 -15.86821 -15.58434 -15.40058 -15.10317 -14.80886 -14.36134 -14.15832 -13.89474 -13.76818 -13.47621 -13.38352 -13.12402 -12.77165 -12.47990 -12.34057 -12.09686 -12.03724 -12.02196 -11.81213 -11.63202 -11.32461 -11.26381 -11.20916 -10.93808 -10.81412 -10.56270 -10.21123 -10.14976 -9.66699 -9.51080 -9.08452 -9.05511 -8.44894 -7.75639 -7.46959 -6.05892 -4.10775 0.72586 1.54370 2.44178 3.25440 3.29594 3.32201 3.36612 3.42286 3.80992 3.96578 4.02373 4.43746 4.68573 4.85159 4.88208 4.90798 4.99241 5.06924 5.18122 5.25289 5.28779 5.30088 5.34444 5.42441 5.51222 5.58169 5.62068 5.69515 5.72848 5.82210 5.83651 5.96947 6.09726 6.16216 6.17585 6.24139 6.42868 6.43419 6.68705 6.97667 7.28297 7.40512 7.48225 7.52307 7.89985 8.11110 8.20590 8.33074 8.83827 8.98865 9.54302 11.02291 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.003435 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.995810 B = 8149.669795 C = 9597.934540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.164 4.164 3 C 0.394 3.606 4 O -0.456 6.456 5 C -0.266 4.266 6 C -0.021 4.021 7 C -0.207 4.207 8 C -0.035 4.035 9 C -0.221 4.221 10 C 0.283 3.717 11 N -0.705 5.705 12 C 0.092 3.908 13 C 0.498 3.502 14 O -0.528 6.528 15 N -0.592 5.592 16 C 0.103 3.897 17 C -0.170 4.170 18 C 0.247 3.753 19 C -0.528 4.528 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.429 0.571 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.044 0.956 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.545 -18.001 -4.818 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.201 4.201 3 C 0.275 3.725 4 O -0.332 6.332 5 C -0.272 4.272 6 C -0.040 4.040 7 C -0.227 4.227 8 C -0.054 4.054 9 C -0.243 4.243 10 C 0.169 3.831 11 N -0.343 5.343 12 C -0.036 4.036 13 C 0.283 3.717 14 O -0.405 6.405 15 N -0.324 5.324 16 C -0.021 4.021 17 C -0.228 4.228 18 C 0.128 3.872 19 C -0.567 4.567 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.726 3.274 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.281 0.719 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.294 -17.347 -4.877 23.001 hybrid contribution -0.363 0.169 0.994 1.071 sum 13.931 -17.178 -3.884 22.456 Atomic orbital electron populations 1.21602 0.93677 1.01521 1.03475 1.21908 0.98312 0.95736 1.04192 1.22309 0.87660 0.91300 0.71265 1.90331 1.58146 1.46655 1.38075 1.19846 0.94945 0.92427 1.19979 1.21116 0.92724 0.97473 0.92675 1.20765 0.95264 0.96786 1.09889 1.21083 0.99180 0.92349 0.92838 1.20741 0.91043 1.00121 1.12417 1.18072 0.89988 0.86836 0.88156 1.45564 1.11675 1.03854 1.73206 1.21346 0.96680 0.83365 1.02251 1.20112 0.89781 0.83418 0.78390 1.90718 1.23453 1.76323 1.50005 1.48217 1.08120 1.07261 1.68837 1.21477 0.83119 1.00371 0.97110 1.22235 1.00783 1.01895 0.97937 1.19308 0.83244 0.87021 0.97638 1.21419 1.15874 1.25910 0.93467 0.92462 1.24934 0.96011 0.95405 0.97715 1.69933 1.22738 1.27997 1.32623 0.86487 0.77986 0.78312 0.84596 1.20609 1.21040 1.19901 0.92270 0.91935 0.92012 0.88656 0.88583 0.85531 0.86119 0.85923 0.85556 0.71888 0.89476 0.89517 0.89589 0.91727 0.91962 0.93092 0.91878 0.94781 0.93813 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.20 37.16 0.34 -1.15 16 2 C -0.16 -1.52 5.11 -27.88 -0.14 -1.67 16 3 C 0.39 5.38 7.09 -30.91 -0.22 5.16 16 4 O -0.46 -8.22 13.28 5.53 0.07 -8.15 16 5 C -0.27 -3.42 5.88 -104.91 -0.62 -4.03 16 6 C -0.02 -0.20 9.46 -39.12 -0.37 -0.57 16 7 C -0.21 -1.81 10.02 -39.64 -0.40 -2.21 16 8 C -0.04 -0.33 10.02 -39.52 -0.40 -0.72 16 9 C -0.22 -2.53 9.30 -39.42 -0.37 -2.89 16 10 C 0.28 4.03 6.66 -83.57 -0.56 3.47 16 11 N -0.70 -12.01 5.55 -59.58 -0.33 -12.34 16 12 C 0.09 1.45 3.97 -5.19 -0.02 1.43 16 13 C 0.50 10.61 7.74 -10.99 -0.09 10.53 16 14 O -0.53 -13.87 15.25 5.56 0.08 -13.78 16 15 N -0.59 -12.44 2.46 -175.06 -0.43 -12.87 16 16 C 0.10 1.59 5.93 -4.04 -0.02 1.57 16 17 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 18 C 0.25 6.47 5.16 -5.19 -0.03 6.45 16 19 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 20 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 23 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.10 0.66 7.91 -51.93 -0.41 0.25 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.13 0.82 6.99 -52.49 -0.37 0.45 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 1.26 6.72 -52.49 -0.35 0.91 16 36 H 0.43 8.60 3.96 -40.94 -0.16 8.43 16 37 H 0.09 1.20 7.38 -51.93 -0.38 0.82 16 38 H 0.09 1.14 6.77 -51.93 -0.35 0.79 16 39 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 40 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 45 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -35.37 379.25 -8.97 -44.34 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.88 Total: 6.20 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.92 Total: -0.18 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.02 Total: -51.27 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.16 Total: -21.93 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.37 -8.97 -44.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863365975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.645 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds