Wall clock time and date at job start Tue Mar 31 2020 14:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46504 * 2 1 4 4 O 1.21315 * 120.00449 * 0.02562 * 3 2 1 5 5 C 1.46650 * 119.99564 * 180.02562 * 3 2 1 6 6 C 1.40060 * 120.24469 * 5.74168 * 5 3 2 7 7 C 1.37624 * 119.90086 * 179.97438 * 6 5 3 8 8 C 1.38698 * 120.39431 * 0.02562 * 7 6 5 9 9 C 1.37938 * 120.49521 * 0.02562 * 8 7 6 10 10 C 1.38966 * 120.08312 * 359.96302 * 9 8 7 11 11 N 1.38694 * 120.19130 * 179.97438 * 10 9 8 12 12 C 1.46496 * 120.00407 * 354.47378 * 11 10 9 13 13 C 1.50703 * 109.47709 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99637 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00564 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99769 * 359.97438 * 15 13 12 17 17 C 1.53011 * 109.47081 * 90.00248 * 16 15 13 18 18 C 1.46501 * 120.00234 * 179.97438 * 15 13 12 19 19 C 1.50698 * 109.46974 * 90.00181 * 18 15 13 20 20 H 1.08003 * 119.99796 * 0.02562 * 19 18 15 21 21 C 1.37872 * 120.00191 * 180.02562 * 19 18 15 22 22 N 1.31522 * 119.99961 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00384 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47139 * 89.99743 * 23 21 19 25 25 H 1.48498 * 109.47247 * 210.00185 * 23 21 19 26 26 H 1.48502 * 109.46842 * 330.00136 * 23 21 19 27 27 H 1.09002 * 109.46699 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47533 * 299.99406 * 1 2 3 29 29 H 1.08994 * 109.47551 * 60.00139 * 1 2 3 30 30 H 1.08999 * 109.47030 * 240.00462 * 2 1 3 31 31 H 1.08991 * 109.47055 * 120.00004 * 2 1 3 32 32 H 1.07999 * 120.05005 * 0.25319 * 6 5 3 33 33 H 1.08000 * 119.80440 * 179.97438 * 7 6 5 34 34 H 1.07999 * 119.75504 * 179.97438 * 8 7 6 35 35 H 1.07995 * 119.96163 * 179.97438 * 9 8 7 36 36 H 0.97001 * 120.00135 * 174.48339 * 11 10 9 37 37 H 1.08996 * 109.47535 * 300.00432 * 12 11 10 38 38 H 1.09003 * 109.47479 * 60.00397 * 12 11 10 39 39 H 1.09004 * 109.47194 * 209.99767 * 16 15 13 40 40 H 1.08997 * 109.47589 * 330.00444 * 16 15 13 41 41 H 1.08995 * 109.47206 * 180.02562 * 17 16 15 42 42 H 1.09004 * 109.46714 * 299.99813 * 17 16 15 43 43 H 1.08997 * 109.46749 * 59.99682 * 17 16 15 44 44 H 1.08997 * 109.47060 * 210.00171 * 18 15 13 45 45 H 1.08994 * 109.47135 * 330.00125 * 18 15 13 46 46 H 0.96999 * 119.99856 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2438 2.3430 0.0005 5 6 3.4740 1.6889 -0.0006 6 6 4.3876 0.6343 -0.1222 7 6 5.7391 0.8939 -0.1224 8 6 6.2037 2.1952 -0.0023 9 6 5.3185 3.2461 0.1195 10 6 3.9495 3.0070 0.1218 11 7 3.0575 4.0619 0.2447 12 6 3.5553 5.4170 0.4936 13 6 2.3920 6.3707 0.5855 14 8 1.2586 5.9588 0.4562 15 7 2.6110 7.6811 0.8113 16 6 3.9800 8.1786 0.9680 17 6 4.5351 8.5836 -0.3991 18 6 1.4801 8.6082 0.9000 19 6 1.0151 8.6978 2.3307 20 1 1.5125 8.1220 3.0972 21 6 -0.0453 9.5146 2.6611 22 7 -0.6507 10.2162 1.7277 23 14 -0.6222 9.6251 4.4343 24 1 0.1113 10.7151 5.1265 25 1 -2.0789 9.9122 4.4640 26 1 -0.3576 8.3359 5.1222 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.0319 -0.3808 -0.2201 33 1 6.4422 0.0794 -0.2158 34 1 7.2665 2.3872 -0.0033 35 1 5.6897 4.2559 0.2129 36 1 2.1039 3.9024 0.1658 37 1 4.1126 5.4331 1.4302 38 1 4.2098 5.7196 -0.3238 39 1 3.9785 9.0442 1.6305 40 1 4.6048 7.3946 1.3960 41 1 5.5538 8.9533 -0.2826 42 1 4.5366 7.7180 -1.0616 43 1 3.9104 9.3676 -0.8271 44 1 1.7913 9.5948 0.5567 45 1 0.6640 8.2466 0.2747 46 1 -1.3965 10.7911 1.9602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863365975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:19 Heat of formation + Delta-G solvation = -69.139508 kcal Electronic energy + Delta-G solvation = -26635.968841 eV Core-core repulsion = 22910.625096 eV Total energy + Delta-G solvation = -3725.343745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50076 -40.75149 -39.17517 -37.21814 -36.36321 -34.95111 -33.87463 -32.12546 -31.73106 -31.03817 -29.39202 -27.65209 -26.06807 -24.90827 -24.27932 -23.71832 -22.22796 -20.87264 -19.92664 -18.80331 -18.54679 -18.06880 -17.46911 -17.12571 -16.75876 -16.66020 -16.40369 -16.18509 -15.66324 -15.11881 -15.09517 -14.91316 -14.67339 -14.49076 -14.37011 -14.08075 -14.02692 -13.62615 -13.34041 -13.24457 -13.13383 -13.08837 -12.79329 -12.70839 -12.60489 -12.54098 -12.22222 -12.07294 -12.00925 -11.95183 -11.78045 -11.15225 -10.81615 -10.68734 -10.47028 -9.86780 -9.55961 -8.45344 -8.27569 -6.42647 -0.11989 0.74308 1.31817 1.35766 1.45577 1.55170 1.63081 1.99577 2.34325 2.62159 3.01182 3.02071 3.16585 3.48048 3.90891 4.00095 4.08315 4.17306 4.21606 4.24225 4.25811 4.35973 4.39702 4.54686 4.57394 4.60348 4.69801 4.85888 4.91493 4.94229 4.95695 5.00800 5.03133 5.11009 5.15433 5.26557 5.33182 5.36719 5.50666 5.52548 5.69579 5.76610 5.95827 6.00057 6.31561 6.50092 6.62413 6.68575 6.92406 7.19048 7.33846 8.79858 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.003435 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.995810 B = 8149.669795 C = 9597.934540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.157 4.157 3 C 0.383 3.617 4 O -0.515 6.515 5 C -0.289 4.289 6 C -0.016 4.016 7 C -0.199 4.199 8 C -0.030 4.030 9 C -0.231 4.231 10 C 0.249 3.751 11 N -0.734 5.734 12 C 0.111 3.889 13 C 0.486 3.514 14 O -0.592 6.592 15 N -0.595 5.595 16 C 0.095 3.905 17 C -0.162 4.162 18 C 0.263 3.737 19 C -0.546 4.546 20 H 0.053 0.947 21 C 0.007 3.993 22 N -0.928 5.928 23 Si 0.969 3.031 24 H -0.258 1.258 25 H -0.280 1.280 26 H -0.276 1.276 27 H 0.089 0.911 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.139 0.861 36 H 0.412 0.588 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.038 0.962 44 H 0.028 0.972 45 H -0.007 1.007 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.618 -20.482 -4.013 28.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.268 3.732 4 O -0.395 6.395 5 C -0.295 4.295 6 C -0.034 4.034 7 C -0.219 4.219 8 C -0.048 4.048 9 C -0.253 4.253 10 C 0.139 3.861 11 N -0.373 5.373 12 C -0.016 4.016 13 C 0.274 3.726 14 O -0.473 6.473 15 N -0.326 5.326 16 C -0.027 4.027 17 C -0.220 4.220 18 C 0.141 3.859 19 C -0.584 4.584 20 H 0.071 0.929 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.793 3.207 24 H -0.183 1.183 25 H -0.206 1.206 26 H -0.201 1.201 27 H 0.108 0.892 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.179 0.821 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.157 0.843 36 H 0.261 0.739 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.011 0.989 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.485 -19.853 -4.077 27.430 hybrid contribution -1.526 0.836 0.683 1.869 sum 16.959 -19.016 -3.394 25.705 Atomic orbital electron populations 1.21611 0.94919 1.02649 1.01220 1.21988 0.97205 0.93290 1.06873 1.23154 0.88130 0.92602 0.69292 1.90330 1.59523 1.48605 1.41092 1.20127 0.95124 0.93159 1.21090 1.21513 0.92692 0.98043 0.91199 1.21271 0.95456 0.97670 1.07467 1.21543 1.00543 0.91973 0.90768 1.20997 0.89998 1.01708 1.12616 1.18525 0.90862 0.86744 0.89926 1.45629 1.11416 1.04723 1.75486 1.21278 0.93928 0.81900 1.04515 1.21165 0.90697 0.83898 0.76817 1.90681 1.26502 1.77467 1.52657 1.48231 1.09148 1.06849 1.68401 1.21873 0.80470 1.01338 0.99022 1.22172 1.02210 1.01543 0.96058 1.18728 0.83942 0.87449 0.95732 1.21695 1.16486 1.25978 0.94258 0.92918 1.25880 0.95975 0.94881 1.02440 1.70055 1.23200 1.28570 1.34890 0.85396 0.77679 0.78631 0.78979 1.18310 1.20582 1.20097 0.89230 0.94524 0.94096 0.85374 0.85823 0.82136 0.82668 0.82598 0.84318 0.73941 0.87102 0.86444 0.90384 0.87786 0.88023 0.92260 0.94291 0.95430 0.98924 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.20 71.98 0.66 -2.39 16 2 C -0.16 -2.68 5.11 29.85 0.15 -2.53 16 3 C 0.38 10.74 7.09 27.88 0.20 10.94 16 4 O -0.52 -20.32 13.28 -3.14 -0.04 -20.36 16 5 C -0.29 -7.17 5.88 -20.05 -0.12 -7.28 16 6 C -0.02 -0.25 9.46 22.57 0.21 -0.03 16 7 C -0.20 -2.50 10.02 22.23 0.22 -2.28 16 8 C -0.03 -0.41 10.02 22.31 0.22 -0.19 16 9 C -0.23 -4.67 9.30 22.37 0.21 -4.47 16 10 C 0.25 6.98 6.66 38.82 0.26 7.24 16 11 N -0.73 -26.00 5.55 -342.41 -1.90 -27.90 16 12 C 0.11 3.51 3.97 85.63 0.34 3.85 16 13 C 0.49 21.82 7.74 87.66 0.68 22.50 16 14 O -0.59 -33.84 15.25 -3.04 -0.05 -33.88 16 15 N -0.60 -26.04 2.46 -826.15 -2.03 -28.07 16 16 C 0.09 2.84 5.93 86.38 0.51 3.35 16 17 C -0.16 -3.89 10.24 71.99 0.74 -3.15 16 18 C 0.26 14.71 5.16 85.63 0.44 15.16 16 19 C -0.55 -32.58 9.39 25.60 0.24 -32.34 16 20 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 21 C 0.01 0.44 5.46 84.65 0.46 0.90 16 22 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 23 Si 0.97 46.35 29.54 68.60 2.03 48.37 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.04 0.92 8.10 -2.39 -0.02 0.90 16 29 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 30 H 0.13 1.36 7.91 -2.39 -0.02 1.34 16 31 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.16 1.26 6.99 -2.91 -0.02 1.24 16 33 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.14 2.32 6.72 -2.91 -0.02 2.30 16 36 H 0.41 17.93 3.96 -94.55 -0.37 17.55 16 37 H 0.11 2.89 7.38 -2.39 -0.02 2.87 16 38 H 0.12 2.89 6.77 -2.39 -0.02 2.87 16 39 H 0.08 2.47 8.07 -2.38 -0.02 2.45 16 40 H 0.10 2.30 6.44 -2.39 -0.02 2.29 16 41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.33 7.22 -2.38 -0.02 1.31 16 43 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 45 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 46 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -87.42 379.25 4.33 -83.09 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.61 Total: 26.88 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.43 Total: 9.27 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -3.64 Total: -113.38 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: -0.09 Total: -54.24 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -87.42 4.33 -83.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863365975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.949 kcal (2) G-P(sol) polarization free energy of solvation -87.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds