Wall clock time and date at job start Tue Mar 31 2020 14:08:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50703 * 109.46504 * 2 1
4 4 O 1.21315 * 120.00449 * 0.02562 * 3 2 1
5 5 C 1.46650 * 119.99564 * 180.02562 * 3 2 1
6 6 C 1.40060 * 120.24469 * 5.74168 * 5 3 2
7 7 C 1.37624 * 119.90086 * 179.97438 * 6 5 3
8 8 C 1.38698 * 120.39431 * 0.02562 * 7 6 5
9 9 C 1.37938 * 120.49521 * 0.02562 * 8 7 6
10 10 C 1.38966 * 120.08312 * 359.96302 * 9 8 7
11 11 N 1.38694 * 120.19130 * 179.97438 * 10 9 8
12 12 C 1.46496 * 120.00407 * 354.47378 * 11 10 9
13 13 C 1.50703 * 109.47709 * 180.02562 * 12 11 10
14 14 O 1.21282 * 119.99637 * 0.02562 * 13 12 11
15 15 N 1.34769 * 120.00564 * 180.02562 * 13 12 11
16 16 C 1.46500 * 119.99769 * 359.97438 * 15 13 12
17 17 C 1.53011 * 109.47081 * 90.00248 * 16 15 13
18 18 C 1.46501 * 120.00234 * 179.97438 * 15 13 12
19 19 C 1.50698 * 109.46974 * 90.00181 * 18 15 13
20 20 H 1.08003 * 119.99796 * 0.02562 * 19 18 15
21 21 C 1.37872 * 120.00191 * 180.02562 * 19 18 15
22 22 N 1.31522 * 119.99961 * 359.97438 * 21 19 18
23 23 Si 1.86804 * 120.00384 * 179.97438 * 21 19 18
24 24 H 1.48498 * 109.47139 * 89.99743 * 23 21 19
25 25 H 1.48498 * 109.47247 * 210.00185 * 23 21 19
26 26 H 1.48502 * 109.46842 * 330.00136 * 23 21 19
27 27 H 1.09002 * 109.46699 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.47533 * 299.99406 * 1 2 3
29 29 H 1.08994 * 109.47551 * 60.00139 * 1 2 3
30 30 H 1.08999 * 109.47030 * 240.00462 * 2 1 3
31 31 H 1.08991 * 109.47055 * 120.00004 * 2 1 3
32 32 H 1.07999 * 120.05005 * 0.25319 * 6 5 3
33 33 H 1.08000 * 119.80440 * 179.97438 * 7 6 5
34 34 H 1.07999 * 119.75504 * 179.97438 * 8 7 6
35 35 H 1.07995 * 119.96163 * 179.97438 * 9 8 7
36 36 H 0.97001 * 120.00135 * 174.48339 * 11 10 9
37 37 H 1.08996 * 109.47535 * 300.00432 * 12 11 10
38 38 H 1.09003 * 109.47479 * 60.00397 * 12 11 10
39 39 H 1.09004 * 109.47194 * 209.99767 * 16 15 13
40 40 H 1.08997 * 109.47589 * 330.00444 * 16 15 13
41 41 H 1.08995 * 109.47206 * 180.02562 * 17 16 15
42 42 H 1.09004 * 109.46714 * 299.99813 * 17 16 15
43 43 H 1.08997 * 109.46749 * 59.99682 * 17 16 15
44 44 H 1.08997 * 109.47060 * 210.00171 * 18 15 13
45 45 H 1.08994 * 109.47135 * 330.00125 * 18 15 13
46 46 H 0.96999 * 119.99856 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 8 1.2438 2.3430 0.0005
5 6 3.4740 1.6889 -0.0006
6 6 4.3876 0.6343 -0.1222
7 6 5.7391 0.8939 -0.1224
8 6 6.2037 2.1952 -0.0023
9 6 5.3185 3.2461 0.1195
10 6 3.9495 3.0070 0.1218
11 7 3.0575 4.0619 0.2447
12 6 3.5553 5.4170 0.4936
13 6 2.3920 6.3707 0.5855
14 8 1.2586 5.9588 0.4562
15 7 2.6110 7.6811 0.8113
16 6 3.9800 8.1786 0.9680
17 6 4.5351 8.5836 -0.3991
18 6 1.4801 8.6082 0.9000
19 6 1.0151 8.6978 2.3307
20 1 1.5125 8.1220 3.0972
21 6 -0.0453 9.5146 2.6611
22 7 -0.6507 10.2162 1.7277
23 14 -0.6222 9.6251 4.4343
24 1 0.1113 10.7151 5.1265
25 1 -2.0789 9.9122 4.4640
26 1 -0.3576 8.3359 5.1222
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3634 0.5137 0.8900
29 1 -0.3634 0.5138 -0.8899
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8899
32 1 4.0319 -0.3808 -0.2201
33 1 6.4422 0.0794 -0.2158
34 1 7.2665 2.3872 -0.0033
35 1 5.6897 4.2559 0.2129
36 1 2.1039 3.9024 0.1658
37 1 4.1126 5.4331 1.4302
38 1 4.2098 5.7196 -0.3238
39 1 3.9785 9.0442 1.6305
40 1 4.6048 7.3946 1.3960
41 1 5.5538 8.9533 -0.2826
42 1 4.5366 7.7180 -1.0616
43 1 3.9104 9.3676 -0.8271
44 1 1.7913 9.5948 0.5567
45 1 0.6640 8.2466 0.2747
46 1 -1.3965 10.7911 1.9602
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000863365975.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:08:19
Heat of formation + Delta-G solvation = -69.139508 kcal
Electronic energy + Delta-G solvation = -26635.968841 eV
Core-core repulsion = 22910.625096 eV
Total energy + Delta-G solvation = -3725.343745 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.50076 -40.75149 -39.17517 -37.21814 -36.36321 -34.95111 -33.87463 -32.12546
-31.73106 -31.03817 -29.39202 -27.65209 -26.06807 -24.90827 -24.27932 -23.71832
-22.22796 -20.87264 -19.92664 -18.80331 -18.54679 -18.06880 -17.46911 -17.12571
-16.75876 -16.66020 -16.40369 -16.18509 -15.66324 -15.11881 -15.09517 -14.91316
-14.67339 -14.49076 -14.37011 -14.08075 -14.02692 -13.62615 -13.34041 -13.24457
-13.13383 -13.08837 -12.79329 -12.70839 -12.60489 -12.54098 -12.22222 -12.07294
-12.00925 -11.95183 -11.78045 -11.15225 -10.81615 -10.68734 -10.47028 -9.86780
-9.55961 -8.45344 -8.27569 -6.42647 -0.11989 0.74308 1.31817 1.35766
1.45577 1.55170 1.63081 1.99577 2.34325 2.62159 3.01182 3.02071
3.16585 3.48048 3.90891 4.00095 4.08315 4.17306 4.21606 4.24225
4.25811 4.35973 4.39702 4.54686 4.57394 4.60348 4.69801 4.85888
4.91493 4.94229 4.95695 5.00800 5.03133 5.11009 5.15433 5.26557
5.33182 5.36719 5.50666 5.52548 5.69579 5.76610 5.95827 6.00057
6.31561 6.50092 6.62413 6.68575 6.92406 7.19048 7.33846 8.79858
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.013112 B = 0.003435 C = 0.002917
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2134.995810 B = 8149.669795 C = 9597.934540
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.157 4.157
3 C 0.383 3.617
4 O -0.515 6.515
5 C -0.289 4.289
6 C -0.016 4.016
7 C -0.199 4.199
8 C -0.030 4.030
9 C -0.231 4.231
10 C 0.249 3.751
11 N -0.734 5.734
12 C 0.111 3.889
13 C 0.486 3.514
14 O -0.592 6.592
15 N -0.595 5.595
16 C 0.095 3.905
17 C -0.162 4.162
18 C 0.263 3.737
19 C -0.546 4.546
20 H 0.053 0.947
21 C 0.007 3.993
22 N -0.928 5.928
23 Si 0.969 3.031
24 H -0.258 1.258
25 H -0.280 1.280
26 H -0.276 1.276
27 H 0.089 0.911
28 H 0.036 0.964
29 H 0.040 0.960
30 H 0.128 0.872
31 H 0.124 0.876
32 H 0.161 0.839
33 H 0.156 0.844
34 H 0.156 0.844
35 H 0.139 0.861
36 H 0.412 0.588
37 H 0.111 0.889
38 H 0.118 0.882
39 H 0.078 0.922
40 H 0.104 0.896
41 H 0.101 0.899
42 H 0.058 0.942
43 H 0.038 0.962
44 H 0.028 0.972
45 H -0.007 1.007
46 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.618 -20.482 -4.013 28.644
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.194 4.194
3 C 0.268 3.732
4 O -0.395 6.395
5 C -0.295 4.295
6 C -0.034 4.034
7 C -0.219 4.219
8 C -0.048 4.048
9 C -0.253 4.253
10 C 0.139 3.861
11 N -0.373 5.373
12 C -0.016 4.016
13 C 0.274 3.726
14 O -0.473 6.473
15 N -0.326 5.326
16 C -0.027 4.027
17 C -0.220 4.220
18 C 0.141 3.859
19 C -0.584 4.584
20 H 0.071 0.929
21 C -0.192 4.192
22 N -0.567 5.567
23 Si 0.793 3.207
24 H -0.183 1.183
25 H -0.206 1.206
26 H -0.201 1.201
27 H 0.108 0.892
28 H 0.055 0.945
29 H 0.059 0.941
30 H 0.146 0.854
31 H 0.142 0.858
32 H 0.179 0.821
33 H 0.173 0.827
34 H 0.174 0.826
35 H 0.157 0.843
36 H 0.261 0.739
37 H 0.129 0.871
38 H 0.136 0.864
39 H 0.096 0.904
40 H 0.122 0.878
41 H 0.120 0.880
42 H 0.077 0.923
43 H 0.057 0.943
44 H 0.046 0.954
45 H 0.011 0.989
46 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 18.485 -19.853 -4.077 27.430
hybrid contribution -1.526 0.836 0.683 1.869
sum 16.959 -19.016 -3.394 25.705
Atomic orbital electron populations
1.21611 0.94919 1.02649 1.01220 1.21988 0.97205 0.93290 1.06873
1.23154 0.88130 0.92602 0.69292 1.90330 1.59523 1.48605 1.41092
1.20127 0.95124 0.93159 1.21090 1.21513 0.92692 0.98043 0.91199
1.21271 0.95456 0.97670 1.07467 1.21543 1.00543 0.91973 0.90768
1.20997 0.89998 1.01708 1.12616 1.18525 0.90862 0.86744 0.89926
1.45629 1.11416 1.04723 1.75486 1.21278 0.93928 0.81900 1.04515
1.21165 0.90697 0.83898 0.76817 1.90681 1.26502 1.77467 1.52657
1.48231 1.09148 1.06849 1.68401 1.21873 0.80470 1.01338 0.99022
1.22172 1.02210 1.01543 0.96058 1.18728 0.83942 0.87449 0.95732
1.21695 1.16486 1.25978 0.94258 0.92918 1.25880 0.95975 0.94881
1.02440 1.70055 1.23200 1.28570 1.34890 0.85396 0.77679 0.78631
0.78979 1.18310 1.20582 1.20097 0.89230 0.94524 0.94096 0.85374
0.85823 0.82136 0.82668 0.82598 0.84318 0.73941 0.87102 0.86444
0.90384 0.87786 0.88023 0.92260 0.94291 0.95430 0.98924 0.92331
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.05 9.20 71.98 0.66 -2.39 16
2 C -0.16 -2.68 5.11 29.85 0.15 -2.53 16
3 C 0.38 10.74 7.09 27.88 0.20 10.94 16
4 O -0.52 -20.32 13.28 -3.14 -0.04 -20.36 16
5 C -0.29 -7.17 5.88 -20.05 -0.12 -7.28 16
6 C -0.02 -0.25 9.46 22.57 0.21 -0.03 16
7 C -0.20 -2.50 10.02 22.23 0.22 -2.28 16
8 C -0.03 -0.41 10.02 22.31 0.22 -0.19 16
9 C -0.23 -4.67 9.30 22.37 0.21 -4.47 16
10 C 0.25 6.98 6.66 38.82 0.26 7.24 16
11 N -0.73 -26.00 5.55 -342.41 -1.90 -27.90 16
12 C 0.11 3.51 3.97 85.63 0.34 3.85 16
13 C 0.49 21.82 7.74 87.66 0.68 22.50 16
14 O -0.59 -33.84 15.25 -3.04 -0.05 -33.88 16
15 N -0.60 -26.04 2.46 -826.15 -2.03 -28.07 16
16 C 0.09 2.84 5.93 86.38 0.51 3.35 16
17 C -0.16 -3.89 10.24 71.99 0.74 -3.15 16
18 C 0.26 14.71 5.16 85.63 0.44 15.16 16
19 C -0.55 -32.58 9.39 25.60 0.24 -32.34 16
20 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16
21 C 0.01 0.44 5.46 84.65 0.46 0.90 16
22 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16
23 Si 0.97 46.35 29.54 68.60 2.03 48.37 16
24 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16
25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16
26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16
28 H 0.04 0.92 8.10 -2.39 -0.02 0.90 16
29 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16
30 H 0.13 1.36 7.91 -2.39 -0.02 1.34 16
31 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16
32 H 0.16 1.26 6.99 -2.91 -0.02 1.24 16
33 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16
34 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16
35 H 0.14 2.32 6.72 -2.91 -0.02 2.30 16
36 H 0.41 17.93 3.96 -94.55 -0.37 17.55 16
37 H 0.11 2.89 7.38 -2.39 -0.02 2.87 16
38 H 0.12 2.89 6.77 -2.39 -0.02 2.87 16
39 H 0.08 2.47 8.07 -2.38 -0.02 2.45 16
40 H 0.10 2.30 6.44 -2.39 -0.02 2.29 16
41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16
42 H 0.06 1.33 7.22 -2.38 -0.02 1.31 16
43 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16
44 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16
45 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16
46 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16
Total: -1.00 -87.42 379.25 4.33 -83.09
By element:
Atomic # 1 Polarization: 26.27 SS G_CDS: 0.61 Total: 26.88 kcal
Atomic # 6 Polarization: 3.84 SS G_CDS: 5.43 Total: 9.27 kcal
Atomic # 7 Polarization: -109.73 SS G_CDS: -3.64 Total: -113.38 kcal
Atomic # 8 Polarization: -54.16 SS G_CDS: -0.09 Total: -54.24 kcal
Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal
Total: -87.42 4.33 -83.09 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000863365975.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.949 kcal
(2) G-P(sol) polarization free energy of solvation -87.423 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.474 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.140 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds