Wall clock time and date at job start Tue Mar 31 2020 14:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47557 * 2 1 4 4 O 1.42900 * 109.47423 * 179.97438 * 3 2 1 5 5 C 1.35912 * 116.99756 * 180.02562 * 4 3 2 6 6 C 1.38852 * 119.99049 * 0.02562 * 5 4 3 7 7 C 1.38236 * 120.24189 * 179.97438 * 6 5 4 8 8 C 1.38003 * 120.20583 * 0.02562 * 7 6 5 9 9 C 1.39559 * 119.96944 * 359.97438 * 8 7 6 10 10 C 1.47857 * 120.12194 * 180.02562 * 9 8 7 11 11 O 1.21553 * 120.00222 * 204.53544 * 10 9 8 12 12 N 1.34770 * 120.00231 * 24.52708 * 10 9 8 13 13 C 1.47428 * 125.64546 * 5.46379 * 12 10 9 14 14 C 1.55134 * 104.72336 * 155.81298 * 13 12 10 15 15 C 1.55160 * 101.48392 * 37.29207 * 14 13 12 16 16 H 1.09007 * 110.71625 * 82.69980 * 15 14 13 17 17 N 1.46500 * 110.72057 * 205.96619 * 15 14 13 18 18 C 1.36938 * 120.00004 * 199.97884 * 17 15 14 19 19 H 1.07993 * 120.00001 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99584 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00123 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47491 * 89.99634 * 22 20 18 24 24 H 1.48499 * 109.46927 * 209.99745 * 22 20 18 25 25 H 1.48501 * 109.47153 * 329.99531 * 22 20 18 26 26 C 1.47023 * 125.65146 * 185.76487 * 12 10 9 27 27 C 1.38455 * 119.98120 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.46747 * 60.00139 * 1 2 3 29 29 H 1.08998 * 109.46945 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46864 * 300.00181 * 1 2 3 31 31 H 1.09002 * 109.47364 * 239.99852 * 2 1 3 32 32 H 1.09004 * 109.47274 * 120.00386 * 2 1 3 33 33 H 1.09002 * 109.46904 * 59.99570 * 3 2 1 34 34 H 1.09004 * 109.47143 * 300.00466 * 3 2 1 35 35 H 1.08008 * 119.87802 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.89615 * 180.02562 * 7 6 5 37 37 H 1.08006 * 120.01519 * 180.02562 * 8 7 6 38 38 H 1.08997 * 110.36477 * 274.73982 * 13 12 10 39 39 H 1.08997 * 110.36966 * 37.06573 * 13 12 10 40 40 H 1.08996 * 111.19217 * 279.18810 * 14 13 12 41 41 H 1.09002 * 110.90765 * 155.27017 * 14 13 12 42 42 H 0.97004 * 119.99488 * 19.97755 * 17 15 14 43 43 H 0.96999 * 119.99838 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.88363 * 300.44317 * 26 12 10 45 45 H 1.08999 * 109.88262 * 61.61232 * 26 12 10 46 46 H 1.07998 * 120.10242 * 359.72719 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0861 2.6534 0.0012 6 6 3.3297 3.8177 0.0018 7 6 3.9518 5.0522 0.0030 8 6 5.3293 5.1354 0.0030 9 6 6.0981 3.9707 0.0025 10 6 7.5742 4.0560 0.0031 11 8 8.2364 3.1353 -0.4344 12 7 8.1856 5.1545 0.4887 13 6 7.5155 6.2893 1.1495 14 6 8.6130 6.9325 2.0375 15 6 9.8676 6.7794 1.1375 16 1 9.9173 7.5850 0.4049 17 7 11.0863 6.7395 1.9495 18 6 12.2992 7.0180 1.3781 19 1 12.3574 7.2666 0.3288 20 6 13.4540 6.9796 2.1475 21 7 13.3831 6.6762 3.4262 22 14 15.1085 7.3602 1.3682 23 1 15.3831 8.8157 1.4751 24 1 16.1736 6.6025 2.0730 25 1 15.0842 6.9649 -0.0630 26 6 9.6304 5.4225 0.4416 27 6 5.4688 2.7254 0.0013 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.2512 3.7587 0.0022 36 1 3.3580 5.9543 0.0038 37 1 5.8122 6.1015 0.0044 38 1 7.1582 7.0032 0.4074 39 1 6.6889 5.9354 1.7655 40 1 8.7339 6.3856 2.9725 41 1 8.3939 7.9833 2.2268 42 1 11.0340 6.5158 2.8919 43 1 14.1901 6.6490 3.9637 44 1 10.1707 4.6361 0.9688 45 1 9.9643 5.4740 -0.5947 46 1 6.0583 1.8205 0.0053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968839036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:49 Heat of formation + Delta-G solvation = -29.189239 kcal Electronic energy + Delta-G solvation = -25769.530688 eV Core-core repulsion = 22045.919317 eV Total energy + Delta-G solvation = -3723.611371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.67709 -39.66390 -37.69084 -37.05245 -34.41175 -34.12436 -31.83378 -31.20976 -30.24369 -29.62500 -27.46354 -27.01310 -24.77278 -23.38509 -22.95308 -22.18169 -21.64163 -20.27714 -19.61252 -18.19724 -17.21663 -16.75141 -16.67015 -16.43478 -16.10190 -15.55689 -15.28473 -14.67079 -14.50863 -14.28674 -13.98177 -13.79471 -13.45815 -13.28157 -13.12999 -12.89222 -12.64306 -12.61259 -12.55466 -12.19351 -11.92170 -11.75153 -11.69121 -11.30846 -11.18124 -11.09206 -11.00651 -10.80893 -10.72828 -10.33617 -10.05217 -9.81288 -9.72906 -9.22241 -9.00182 -8.47055 -8.34074 -7.08680 -5.83421 -3.14337 0.71811 1.19218 2.71661 2.89173 3.25029 3.41807 3.47645 3.49161 3.69855 4.35263 4.40525 4.44661 4.54734 4.58063 4.70080 4.73345 4.84222 4.90110 4.93412 5.03569 5.10865 5.18893 5.23085 5.25168 5.37956 5.47255 5.48627 5.58240 5.66621 5.69990 5.72816 5.73433 5.91497 5.98143 6.07630 6.12461 6.18151 6.29317 6.35563 6.37367 6.51924 6.70315 6.88273 7.12442 7.65632 7.74142 8.32261 8.34945 9.46047 9.99241 10.33928 11.38582 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033387 B = 0.002133 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.458302 B =13124.374474 C =13479.169369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.058 3.942 4 O -0.314 6.314 5 C 0.122 3.878 6 C -0.191 4.191 7 C -0.088 4.088 8 C -0.136 4.136 9 C -0.082 4.082 10 C 0.565 3.435 11 O -0.537 6.537 12 N -0.605 5.605 13 C 0.097 3.903 14 C -0.142 4.142 15 C 0.172 3.828 16 H 0.066 0.934 17 N -0.713 5.713 18 C -0.249 4.249 19 H 0.073 0.927 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.082 3.918 27 C -0.097 4.097 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.143 0.857 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.405 -5.362 -5.636 29.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.017 4.017 4 O -0.228 6.228 5 C 0.077 3.923 6 C -0.210 4.210 7 C -0.106 4.106 8 C -0.154 4.154 9 C -0.086 4.086 10 C 0.353 3.647 11 O -0.415 6.415 12 N -0.338 5.338 13 C -0.026 4.026 14 C -0.181 4.181 15 C 0.059 3.941 16 H 0.084 0.916 17 N -0.353 5.353 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.043 4.043 27 C -0.116 4.116 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.797 -6.058 -5.976 29.070 hybrid contribution 0.690 0.240 -0.094 0.737 sum -27.106 -5.818 -6.070 28.380 Atomic orbital electron populations 1.21691 0.94203 1.02608 1.02190 1.21494 0.96021 0.94803 1.03932 1.22891 0.78438 0.98963 1.01407 1.86083 1.21259 1.26732 1.88739 1.18782 0.91869 0.84304 0.97393 1.21392 1.00084 0.92429 1.07082 1.20890 0.94317 0.97104 0.98266 1.21783 0.93974 0.98679 1.00965 1.19735 0.93167 0.93410 1.02247 1.17894 0.86745 0.81491 0.78521 1.90789 1.66282 1.36910 1.47488 1.48433 1.09687 1.18406 1.57303 1.22663 0.96452 0.88100 0.95365 1.23143 0.94947 1.01095 0.98874 1.21220 0.86808 0.93133 0.92892 0.91581 1.42369 1.01110 1.82574 1.09200 1.19260 0.84385 1.40038 0.94326 0.90902 1.24776 0.98016 1.01971 0.95750 1.69660 1.27984 1.54585 1.05468 0.86167 0.83805 0.77734 0.78336 1.21605 1.21700 1.20618 1.23302 0.78076 1.01464 1.01453 1.20449 0.91288 0.98183 1.01715 0.92370 0.91665 0.92341 0.90715 0.90693 0.91973 0.91997 0.85316 0.85136 0.83991 0.91097 0.90482 0.90352 0.89886 0.77831 0.93345 0.90652 0.92241 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.74 6.30 -26.73 -0.17 -0.91 16 3 C 0.06 0.41 4.74 37.15 0.18 0.59 16 4 O -0.31 -3.43 10.13 -19.46 -0.20 -3.63 16 5 C 0.12 1.41 6.68 -39.27 -0.26 1.14 16 6 C -0.19 -1.76 9.03 -39.35 -0.36 -2.12 16 7 C -0.09 -0.78 10.03 -39.67 -0.40 -1.18 16 8 C -0.14 -1.47 8.07 -39.18 -0.32 -1.78 16 9 C -0.08 -1.15 5.67 -104.99 -0.60 -1.75 16 10 C 0.57 9.83 7.64 -12.33 -0.09 9.74 16 11 O -0.54 -11.39 16.94 5.32 0.09 -11.30 16 12 N -0.61 -9.90 3.32 -171.48 -0.57 -10.47 16 13 C 0.10 1.21 5.00 -2.41 -0.01 1.20 16 14 C -0.14 -2.07 6.71 -24.46 -0.16 -2.23 16 15 C 0.17 3.23 3.59 -66.10 -0.24 2.99 16 16 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 17 N -0.71 -17.23 5.18 -51.65 -0.27 -17.50 16 18 C -0.25 -6.75 9.98 -15.06 -0.15 -6.90 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 22 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.08 1.57 6.62 -3.06 -0.02 1.55 16 27 C -0.10 -1.33 9.53 -39.02 -0.37 -1.70 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 34 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 35 H 0.13 0.85 6.28 -52.48 -0.33 0.52 16 36 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 37 H 0.14 1.33 4.58 -52.48 -0.24 1.09 16 38 H 0.07 0.72 6.84 -51.93 -0.36 0.36 16 39 H 0.08 0.84 6.81 -51.93 -0.35 0.48 16 40 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.39 9.96 7.71 -40.82 -0.31 9.65 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.08 1.68 8.03 -51.93 -0.42 1.26 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.14 2.05 7.84 -52.49 -0.41 1.64 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -33.01 375.23 -9.27 -42.28 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.98 Total: 6.65 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.70 Total: -1.93 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.11 Total: -54.88 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.11 Total: -14.93 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.01 -9.27 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968839036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.086 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds