Wall clock time and date at job start Tue Mar 31 2020 14:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47557 * 2 1 4 4 O 1.42900 * 109.47423 * 179.97438 * 3 2 1 5 5 C 1.35912 * 116.99756 * 180.02562 * 4 3 2 6 6 C 1.38852 * 119.99049 * 0.02562 * 5 4 3 7 7 C 1.38236 * 120.24189 * 179.97438 * 6 5 4 8 8 C 1.38003 * 120.20583 * 0.02562 * 7 6 5 9 9 C 1.39559 * 119.96944 * 359.97438 * 8 7 6 10 10 C 1.47857 * 120.12194 * 180.02562 * 9 8 7 11 11 O 1.21553 * 120.00222 * 204.53544 * 10 9 8 12 12 N 1.34770 * 120.00231 * 24.52708 * 10 9 8 13 13 C 1.47428 * 125.64546 * 5.46379 * 12 10 9 14 14 C 1.55134 * 104.72336 * 155.81298 * 13 12 10 15 15 C 1.55160 * 101.48392 * 37.29207 * 14 13 12 16 16 H 1.09007 * 110.71625 * 82.69980 * 15 14 13 17 17 N 1.46500 * 110.72057 * 205.96619 * 15 14 13 18 18 C 1.36938 * 120.00004 * 199.97884 * 17 15 14 19 19 H 1.07993 * 120.00001 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99584 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00123 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47491 * 89.99634 * 22 20 18 24 24 H 1.48499 * 109.46927 * 209.99745 * 22 20 18 25 25 H 1.48501 * 109.47153 * 329.99531 * 22 20 18 26 26 C 1.47023 * 125.65146 * 185.76487 * 12 10 9 27 27 C 1.38455 * 119.98120 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.46747 * 60.00139 * 1 2 3 29 29 H 1.08998 * 109.46945 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46864 * 300.00181 * 1 2 3 31 31 H 1.09002 * 109.47364 * 239.99852 * 2 1 3 32 32 H 1.09004 * 109.47274 * 120.00386 * 2 1 3 33 33 H 1.09002 * 109.46904 * 59.99570 * 3 2 1 34 34 H 1.09004 * 109.47143 * 300.00466 * 3 2 1 35 35 H 1.08008 * 119.87802 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.89615 * 180.02562 * 7 6 5 37 37 H 1.08006 * 120.01519 * 180.02562 * 8 7 6 38 38 H 1.08997 * 110.36477 * 274.73982 * 13 12 10 39 39 H 1.08997 * 110.36966 * 37.06573 * 13 12 10 40 40 H 1.08996 * 111.19217 * 279.18810 * 14 13 12 41 41 H 1.09002 * 110.90765 * 155.27017 * 14 13 12 42 42 H 0.97004 * 119.99488 * 19.97755 * 17 15 14 43 43 H 0.96999 * 119.99838 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.88363 * 300.44317 * 26 12 10 45 45 H 1.08999 * 109.88262 * 61.61232 * 26 12 10 46 46 H 1.07998 * 120.10242 * 359.72719 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0861 2.6534 0.0012 6 6 3.3297 3.8177 0.0018 7 6 3.9518 5.0522 0.0030 8 6 5.3293 5.1354 0.0030 9 6 6.0981 3.9707 0.0025 10 6 7.5742 4.0560 0.0031 11 8 8.2364 3.1353 -0.4344 12 7 8.1856 5.1545 0.4887 13 6 7.5155 6.2893 1.1495 14 6 8.6130 6.9325 2.0375 15 6 9.8676 6.7794 1.1375 16 1 9.9173 7.5850 0.4049 17 7 11.0863 6.7395 1.9495 18 6 12.2992 7.0180 1.3781 19 1 12.3574 7.2666 0.3288 20 6 13.4540 6.9796 2.1475 21 7 13.3831 6.6762 3.4262 22 14 15.1085 7.3602 1.3682 23 1 15.3831 8.8157 1.4751 24 1 16.1736 6.6025 2.0730 25 1 15.0842 6.9649 -0.0630 26 6 9.6304 5.4225 0.4416 27 6 5.4688 2.7254 0.0013 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.2512 3.7587 0.0022 36 1 3.3580 5.9543 0.0038 37 1 5.8122 6.1015 0.0044 38 1 7.1582 7.0032 0.4074 39 1 6.6889 5.9354 1.7655 40 1 8.7339 6.3856 2.9725 41 1 8.3939 7.9833 2.2268 42 1 11.0340 6.5158 2.8919 43 1 14.1901 6.6490 3.9637 44 1 10.1707 4.6361 0.9688 45 1 9.9643 5.4740 -0.5947 46 1 6.0583 1.8205 0.0053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968839036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:48 Heat of formation + Delta-G solvation = -50.472233 kcal Electronic energy + Delta-G solvation = -25770.453588 eV Core-core repulsion = 22045.919317 eV Total energy + Delta-G solvation = -3724.534271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69430 -40.72276 -38.86948 -38.19327 -35.99299 -34.83886 -33.48260 -32.23979 -31.25497 -31.04335 -28.95285 -27.54307 -26.27612 -24.90566 -23.87850 -23.10705 -22.32670 -21.62075 -20.82380 -19.43612 -18.99032 -17.84473 -17.50473 -17.25217 -17.18788 -16.64095 -16.50463 -16.38094 -15.46598 -15.30667 -15.06243 -15.01067 -14.85295 -14.55319 -14.31311 -13.94635 -13.61778 -13.50812 -13.46891 -13.26422 -13.01630 -12.88769 -12.81078 -12.50609 -12.39526 -12.28642 -12.15462 -12.09235 -11.79205 -11.72892 -11.61118 -11.49713 -11.16326 -10.98038 -10.14011 -9.69843 -9.28537 -9.10598 -7.97839 -5.27947 -0.21637 0.37420 1.46957 1.48808 1.56836 1.65906 1.81115 2.24852 2.54791 2.75466 3.31211 3.42021 3.62840 3.76895 3.90377 3.93092 3.95476 3.96646 4.07334 4.17458 4.26107 4.29516 4.34325 4.36464 4.45409 4.54173 4.56520 4.59895 4.65039 4.80123 4.86027 4.87609 4.98299 5.12983 5.15695 5.18259 5.18745 5.21660 5.32570 5.34810 5.35547 5.38421 5.51759 5.67170 6.23846 6.39030 6.45394 6.99154 7.30811 8.03132 8.25917 9.25068 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033387 B = 0.002133 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.458302 B =13124.374474 C =13479.169369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.050 3.950 4 O -0.338 6.338 5 C 0.115 3.885 6 C -0.177 4.177 7 C -0.073 4.073 8 C -0.130 4.130 9 C -0.101 4.101 10 C 0.558 3.442 11 O -0.593 6.593 12 N -0.604 5.604 13 C 0.100 3.900 14 C -0.131 4.131 15 C 0.166 3.834 16 H 0.079 0.921 17 N -0.726 5.726 18 C -0.247 4.247 19 H 0.079 0.921 20 C -0.072 4.072 21 N -0.967 5.967 22 Si 0.972 3.028 23 H -0.281 1.281 24 H -0.298 1.298 25 H -0.273 1.273 26 C 0.092 3.908 27 C -0.126 4.126 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.164 0.836 36 H 0.176 0.824 37 H 0.162 0.838 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.032 0.968 45 H 0.049 0.951 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.332 -2.915 -6.364 33.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.024 4.024 4 O -0.252 6.252 5 C 0.070 3.930 6 C -0.196 4.196 7 C -0.091 4.091 8 C -0.148 4.148 9 C -0.105 4.105 10 C 0.349 3.651 11 O -0.476 6.476 12 N -0.336 5.336 13 C -0.021 4.021 14 C -0.169 4.169 15 C 0.056 3.944 16 H 0.097 0.903 17 N -0.364 5.364 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.801 3.199 23 H -0.208 1.208 24 H -0.225 1.225 25 H -0.198 1.198 26 C -0.034 4.034 27 C -0.146 4.146 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.181 0.819 36 H 0.193 0.807 37 H 0.179 0.821 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.131 0.869 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -31.789 -3.580 -6.730 32.690 hybrid contribution 1.751 -0.589 0.092 1.850 sum -30.038 -4.169 -6.638 31.044 Atomic orbital electron populations 1.21671 0.92460 1.03157 1.02938 1.21524 0.97412 0.94242 1.03148 1.23199 0.76430 0.99907 1.02860 1.86070 1.23499 1.26950 1.88704 1.18829 0.91126 0.85581 0.97440 1.21821 1.01675 0.91491 1.04581 1.21384 0.93536 0.98506 0.95629 1.22001 0.94887 0.97891 1.00002 1.19458 0.90754 0.94910 1.05334 1.18596 0.88413 0.80681 0.77402 1.90743 1.67855 1.38931 1.50035 1.48467 1.08538 1.19417 1.57193 1.22998 0.95924 0.87163 0.96036 1.23101 0.93075 1.03052 0.97696 1.21457 0.86751 0.92642 0.93597 0.90349 1.42537 1.02174 1.82561 1.09155 1.19655 0.85637 1.38038 0.94547 0.90326 1.25564 1.01424 1.03119 0.96336 1.69809 1.28334 1.56769 1.06770 0.85170 0.79578 0.77555 0.77631 1.20818 1.22508 1.19771 1.22896 0.80019 1.00351 1.00156 1.20345 0.92661 0.97353 1.04213 0.91578 0.91308 0.91568 0.91564 0.91555 0.90358 0.90407 0.81897 0.80677 0.82055 0.87113 0.87916 0.91749 0.86885 0.79164 0.93969 0.94973 0.93290 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.91 71.98 0.71 -0.15 16 2 C -0.13 -1.34 6.30 30.59 0.19 -1.14 16 3 C 0.05 0.60 4.74 71.98 0.34 0.94 16 4 O -0.34 -7.17 10.13 -92.55 -0.94 -8.11 16 5 C 0.12 2.53 6.68 22.47 0.15 2.68 16 6 C -0.18 -2.51 9.03 22.42 0.20 -2.31 16 7 C -0.07 -0.89 10.03 22.21 0.22 -0.67 16 8 C -0.13 -2.32 8.07 22.53 0.18 -2.13 16 9 C -0.10 -2.79 5.67 -20.10 -0.11 -2.91 16 10 C 0.56 20.11 7.64 86.79 0.66 20.78 16 11 O -0.59 -27.24 16.94 -3.88 -0.07 -27.31 16 12 N -0.60 -19.68 3.32 -814.73 -2.71 -22.39 16 13 C 0.10 2.16 5.00 86.93 0.43 2.60 16 14 C -0.13 -3.53 6.71 32.07 0.22 -3.31 16 15 C 0.17 6.17 3.59 46.18 0.17 6.34 16 16 H 0.08 2.76 8.12 -2.38 -0.02 2.74 16 17 N -0.73 -35.72 5.18 -317.32 -1.64 -37.36 16 18 C -0.25 -13.55 9.98 84.03 0.84 -12.71 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 21 N -0.97 -59.06 13.06 21.65 0.28 -58.77 16 22 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 C 0.09 3.65 6.62 86.73 0.57 4.22 16 27 C -0.13 -3.58 9.53 22.63 0.22 -3.36 16 28 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.68 7.65 -2.39 -0.02 0.66 16 34 H 0.08 0.68 7.66 -2.39 -0.02 0.66 16 35 H 0.16 1.19 6.28 -2.91 -0.02 1.17 16 36 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 37 H 0.16 2.17 4.58 -2.91 -0.01 2.15 16 38 H 0.11 1.62 6.84 -2.39 -0.02 1.61 16 39 H 0.10 1.79 6.81 -2.39 -0.02 1.78 16 40 H 0.06 1.94 8.00 -2.39 -0.02 1.92 16 41 H 0.11 2.42 8.14 -2.39 -0.02 2.41 16 42 H 0.38 19.94 7.71 -92.71 -0.72 19.22 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.03 1.53 8.03 -2.38 -0.02 1.51 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.11 3.67 7.84 -2.91 -0.02 3.64 16 Total: -1.00 -77.96 375.23 2.69 -75.27 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.27 Total: 25.13 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.46 Total: 5.20 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -4.07 Total: -118.52 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.00 Total: -35.42 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -77.96 2.69 -75.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968839036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.798 kcal (2) G-P(sol) polarization free energy of solvation -77.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds