Wall clock time and date at job start Tue Mar 31 2020 14:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47592 * 2 1 4 4 O 1.42904 * 109.46965 * 120.00528 * 2 1 3 5 5 C 1.35647 * 117.00011 * 152.98003 * 4 2 1 6 6 C 1.38715 * 120.15413 * 5.14614 * 5 4 2 7 7 C 1.38053 * 120.08926 * 179.97438 * 6 5 4 8 8 C 1.38552 * 120.38611 * 0.02740 * 7 6 5 9 9 C 1.37784 * 120.30216 * 359.74050 * 8 7 6 10 10 C 1.39707 * 119.90725 * 0.48270 * 9 8 7 11 11 C 1.47535 * 120.19055 * 179.79320 * 10 9 8 12 12 O 1.21589 * 119.99980 * 136.01504 * 11 10 9 13 13 N 1.34784 * 119.99682 * 316.00784 * 11 10 9 14 14 C 1.47012 * 125.65048 * 354.73936 * 13 11 10 15 15 C 1.54327 * 107.27170 * 181.00956 * 14 13 11 16 16 C 1.55163 * 102.94179 * 22.19632 * 15 14 13 17 17 H 1.08994 * 111.00190 * 82.56772 * 16 15 14 18 18 N 1.46494 * 111.00451 * 206.42429 * 16 15 14 19 19 C 1.36934 * 120.00236 * 204.99797 * 18 16 15 20 20 H 1.07999 * 119.99543 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00503 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99703 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47005 * 89.99839 * 23 21 19 25 25 H 1.48493 * 109.47073 * 210.00180 * 23 21 19 26 26 H 1.48504 * 109.47101 * 329.99785 * 23 21 19 27 27 C 1.47426 * 125.64347 * 174.68556 * 13 11 10 28 28 H 1.09003 * 109.47246 * 300.00095 * 1 2 3 29 29 H 1.09005 * 109.47334 * 59.99703 * 1 2 3 30 30 H 1.08996 * 109.47454 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46767 * 239.99999 * 2 1 3 32 32 H 1.09000 * 109.46999 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47385 * 300.00366 * 3 2 1 34 34 H 1.09003 * 109.46902 * 59.99695 * 3 2 1 35 35 H 1.07998 * 119.95471 * 359.97438 * 6 5 4 36 36 H 1.08002 * 119.80397 * 179.97438 * 7 6 5 37 37 H 1.07998 * 119.84157 * 180.02562 * 8 7 6 38 38 H 1.07999 * 120.04272 * 180.28159 * 9 8 7 39 39 H 1.09001 * 109.88596 * 61.59549 * 14 13 11 40 40 H 1.08997 * 109.88789 * 300.42632 * 14 13 11 41 41 H 1.08994 * 110.72181 * 263.83298 * 15 14 13 42 42 H 1.09007 * 110.72055 * 140.55637 * 15 14 13 43 43 H 0.97005 * 120.00006 * 24.99517 * 18 16 15 44 44 H 0.96994 * 119.99666 * 180.02562 * 22 21 19 45 45 H 1.08995 * 110.36812 * 37.07799 * 27 13 11 46 46 H 1.09001 * 110.45874 * 274.80711 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 3.2267 -1.2602 1.0842 6 6 4.0004 -1.1012 -0.0561 7 6 5.2425 -1.6982 -0.1385 8 6 5.7253 -2.4594 0.9137 9 6 4.9723 -2.6239 2.0557 10 6 3.7117 -2.0293 2.1505 11 6 2.8981 -2.2051 3.3687 12 8 2.3192 -1.2533 3.8557 13 7 2.7966 -3.4209 3.9415 14 6 3.3500 -4.6714 3.4017 15 6 2.9659 -5.8021 4.3792 16 6 1.7359 -5.2165 5.1220 17 1 0.8253 -5.3552 4.5393 18 7 1.5983 -5.8060 6.4560 19 6 0.3723 -5.8444 7.0645 20 1 -0.4933 -5.4396 6.5611 21 6 0.2417 -6.4035 8.3283 22 7 1.2965 -6.8973 8.9416 23 14 -1.4310 -6.4564 9.1581 24 1 -2.1218 -7.7210 8.7991 25 1 -1.2552 -6.3892 10.6311 26 1 -2.2457 -5.3010 8.7037 27 6 2.1132 -3.7168 5.2138 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8901 32 1 3.1301 1.4423 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.6306 -0.5097 -0.8805 36 1 5.8408 -1.5717 -1.0286 37 1 6.6984 -2.9221 0.8400 38 1 5.3547 -3.2144 2.8751 39 1 4.4350 -4.5961 3.3299 40 1 2.9243 -4.8711 2.4183 41 1 3.7791 -6.0012 5.0772 42 1 2.6933 -6.7064 3.8350 43 1 2.3758 -6.1693 6.9082 44 1 1.2053 -7.2883 9.8245 45 1 1.2164 -3.1055 5.3139 46 1 2.7841 -3.5453 6.0556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970539979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:52 Heat of formation + Delta-G solvation = -27.871537 kcal Electronic energy + Delta-G solvation = -26787.486137 eV Core-core repulsion = 23063.931905 eV Total energy + Delta-G solvation = -3723.554232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.77816 -39.35701 -37.73557 -37.01354 -34.10993 -33.47042 -31.93618 -30.95180 -29.99460 -29.51923 -27.54791 -27.46719 -24.63238 -23.72579 -23.07691 -22.21223 -21.00492 -20.20665 -19.60773 -18.21076 -17.42156 -16.95327 -16.37789 -15.79019 -15.59216 -15.45068 -15.10121 -14.64884 -14.38566 -14.15375 -13.79203 -13.52720 -13.38034 -13.10470 -13.01720 -12.86847 -12.56435 -12.49623 -12.35369 -12.15444 -12.06246 -11.91828 -11.52137 -11.42966 -11.07382 -11.03744 -10.91128 -10.80375 -10.72804 -10.24185 -10.01572 -9.77405 -9.58454 -9.19166 -8.98903 -8.40586 -8.20912 -7.05440 -5.81863 -3.12243 0.84032 1.20654 2.94034 2.95952 3.26136 3.43248 3.48967 3.50762 3.67319 4.41159 4.51305 4.54259 4.58629 4.63855 4.73279 4.80073 4.95672 5.01446 5.09413 5.20023 5.25244 5.29547 5.34728 5.42481 5.49954 5.52878 5.57504 5.63333 5.76529 5.81748 5.84139 5.89100 6.00392 6.03244 6.07168 6.17300 6.22831 6.31071 6.42606 6.50930 6.61089 6.70225 6.92297 7.25538 7.68342 7.87250 8.35833 8.48807 9.47923 10.01193 10.36321 11.40285 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.003013 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.854490 B = 9291.245067 C =10453.611711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 C -0.178 4.178 4 O -0.287 6.287 5 C 0.180 3.820 6 C -0.221 4.221 7 C -0.062 4.062 8 C -0.166 4.166 9 C -0.050 4.050 10 C -0.157 4.157 11 C 0.575 3.425 12 O -0.528 6.528 13 N -0.611 5.611 14 C 0.103 3.897 15 C -0.142 4.142 16 C 0.172 3.828 17 H 0.067 0.933 18 N -0.711 5.711 19 C -0.247 4.247 20 H 0.073 0.927 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.083 3.917 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.071 0.929 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.216 10.710 -23.429 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 C -0.236 4.236 4 O -0.199 6.199 5 C 0.132 3.868 6 C -0.240 4.240 7 C -0.080 4.080 8 C -0.185 4.185 9 C -0.069 4.069 10 C -0.161 4.161 11 C 0.363 3.637 12 O -0.404 6.404 13 N -0.345 5.345 14 C -0.020 4.020 15 C -0.181 4.181 16 C 0.060 3.940 17 H 0.085 0.915 18 N -0.351 5.351 19 C -0.378 4.378 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.042 4.042 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.549 11.297 -22.934 26.657 hybrid contribution -0.403 -0.074 0.426 0.591 sum 7.146 11.223 -22.508 26.146 Atomic orbital electron populations 1.21858 0.92278 1.03405 1.03144 1.22533 0.95800 0.92776 0.87217 1.22359 1.01995 0.95915 1.03304 1.86314 1.30130 1.65739 1.37700 1.18942 0.85018 0.90065 0.92751 1.21226 0.97006 1.07201 0.98538 1.21063 0.94424 0.94286 0.98252 1.20977 1.00972 1.02454 0.94049 1.21288 0.92002 0.95688 0.97875 1.19334 0.97274 1.04207 0.95293 1.17633 0.80896 0.82009 0.83194 1.90793 1.46275 1.39295 1.64084 1.48418 1.55405 1.06370 1.24335 1.22129 0.98042 0.84192 0.97678 1.22960 1.00090 0.96876 0.98153 1.21309 0.95248 0.89235 0.88231 0.91478 1.42302 1.08995 1.69577 1.14190 1.19281 0.86850 1.33099 0.98544 0.90927 1.24765 0.97406 1.01030 0.97371 1.69661 1.28023 1.44939 1.15236 0.86166 0.83412 0.77771 0.78718 1.21623 1.21708 1.20594 1.23393 0.96821 1.00335 0.83698 0.91109 0.90565 0.91560 0.90892 0.91937 0.91037 0.91070 0.84880 0.85554 0.85351 0.84524 0.91777 0.91833 0.90463 0.90246 0.77871 0.93375 0.91028 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.56 37.16 0.36 -0.95 16 2 C 0.07 0.71 2.83 -26.73 -0.08 0.63 16 3 C -0.18 -1.47 9.23 37.16 0.34 -1.13 16 4 O -0.29 -4.11 8.68 -32.34 -0.28 -4.39 16 5 C 0.18 2.42 6.60 -38.69 -0.26 2.16 16 6 C -0.22 -2.20 8.34 -39.47 -0.33 -2.53 16 7 C -0.06 -0.53 10.03 -39.53 -0.40 -0.92 16 8 C -0.17 -1.50 10.02 -39.63 -0.40 -1.89 16 9 C -0.05 -0.57 8.43 -39.20 -0.33 -0.90 16 10 C -0.16 -2.29 5.41 -104.85 -0.57 -2.85 16 11 C 0.57 10.43 7.19 -12.47 -0.09 10.34 16 12 O -0.53 -11.62 16.53 -8.41 -0.14 -11.76 16 13 N -0.61 -10.43 3.33 -171.75 -0.57 -11.01 16 14 C 0.10 1.40 5.90 -3.07 -0.02 1.38 16 15 C -0.14 -2.16 6.60 -24.89 -0.16 -2.33 16 16 C 0.17 3.39 3.71 -65.78 -0.24 3.15 16 17 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 18 N -0.71 -17.43 5.24 -51.35 -0.27 -17.70 16 19 C -0.25 -6.78 9.96 -15.06 -0.15 -6.93 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.08 1.63 6.63 -2.53 -0.02 1.61 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.57 6.16 -51.93 -0.32 0.25 16 32 H 0.06 0.52 7.17 -51.93 -0.37 0.15 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.13 1.02 5.52 -52.49 -0.29 0.73 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 1.40 6.07 -52.49 -0.32 1.08 16 39 H 0.06 0.72 5.69 -51.93 -0.30 0.42 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 42 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 43 H 0.39 9.95 7.76 -40.82 -0.32 9.63 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.07 1.55 7.99 -51.93 -0.41 1.14 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -33.79 373.51 -9.30 -43.09 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.94 Total: 7.33 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.43 Total: -1.53 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.12 Total: -55.70 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.42 Total: -16.15 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.79 -9.30 -43.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970539979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.218 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds