Wall clock time and date at job start Tue Mar 31 2020 14:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47592 * 2 1 4 4 O 1.42904 * 109.46965 * 120.00528 * 2 1 3 5 5 C 1.35647 * 117.00011 * 152.98003 * 4 2 1 6 6 C 1.38715 * 120.15413 * 5.14614 * 5 4 2 7 7 C 1.38053 * 120.08926 * 179.97438 * 6 5 4 8 8 C 1.38552 * 120.38611 * 0.02740 * 7 6 5 9 9 C 1.37784 * 120.30216 * 359.74050 * 8 7 6 10 10 C 1.39707 * 119.90725 * 0.48270 * 9 8 7 11 11 C 1.47535 * 120.19055 * 179.79320 * 10 9 8 12 12 O 1.21589 * 119.99980 * 136.01504 * 11 10 9 13 13 N 1.34784 * 119.99682 * 316.00784 * 11 10 9 14 14 C 1.47012 * 125.65048 * 354.73936 * 13 11 10 15 15 C 1.54327 * 107.27170 * 181.00956 * 14 13 11 16 16 C 1.55163 * 102.94179 * 22.19632 * 15 14 13 17 17 H 1.08994 * 111.00190 * 82.56772 * 16 15 14 18 18 N 1.46494 * 111.00451 * 206.42429 * 16 15 14 19 19 C 1.36934 * 120.00236 * 204.99797 * 18 16 15 20 20 H 1.07999 * 119.99543 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00503 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99703 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47005 * 89.99839 * 23 21 19 25 25 H 1.48493 * 109.47073 * 210.00180 * 23 21 19 26 26 H 1.48504 * 109.47101 * 329.99785 * 23 21 19 27 27 C 1.47426 * 125.64347 * 174.68556 * 13 11 10 28 28 H 1.09003 * 109.47246 * 300.00095 * 1 2 3 29 29 H 1.09005 * 109.47334 * 59.99703 * 1 2 3 30 30 H 1.08996 * 109.47454 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46767 * 239.99999 * 2 1 3 32 32 H 1.09000 * 109.46999 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47385 * 300.00366 * 3 2 1 34 34 H 1.09003 * 109.46902 * 59.99695 * 3 2 1 35 35 H 1.07998 * 119.95471 * 359.97438 * 6 5 4 36 36 H 1.08002 * 119.80397 * 179.97438 * 7 6 5 37 37 H 1.07998 * 119.84157 * 180.02562 * 8 7 6 38 38 H 1.07999 * 120.04272 * 180.28159 * 9 8 7 39 39 H 1.09001 * 109.88596 * 61.59549 * 14 13 11 40 40 H 1.08997 * 109.88789 * 300.42632 * 14 13 11 41 41 H 1.08994 * 110.72181 * 263.83298 * 15 14 13 42 42 H 1.09007 * 110.72055 * 140.55637 * 15 14 13 43 43 H 0.97005 * 120.00006 * 24.99517 * 18 16 15 44 44 H 0.96994 * 119.99666 * 180.02562 * 22 21 19 45 45 H 1.08995 * 110.36812 * 37.07799 * 27 13 11 46 46 H 1.09001 * 110.45874 * 274.80711 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 3.2267 -1.2602 1.0842 6 6 4.0004 -1.1012 -0.0561 7 6 5.2425 -1.6982 -0.1385 8 6 5.7253 -2.4594 0.9137 9 6 4.9723 -2.6239 2.0557 10 6 3.7117 -2.0293 2.1505 11 6 2.8981 -2.2051 3.3687 12 8 2.3192 -1.2533 3.8557 13 7 2.7966 -3.4209 3.9415 14 6 3.3500 -4.6714 3.4017 15 6 2.9659 -5.8021 4.3792 16 6 1.7359 -5.2165 5.1220 17 1 0.8253 -5.3552 4.5393 18 7 1.5983 -5.8060 6.4560 19 6 0.3723 -5.8444 7.0645 20 1 -0.4933 -5.4396 6.5611 21 6 0.2417 -6.4035 8.3283 22 7 1.2965 -6.8973 8.9416 23 14 -1.4310 -6.4564 9.1581 24 1 -2.1218 -7.7210 8.7991 25 1 -1.2552 -6.3892 10.6311 26 1 -2.2457 -5.3010 8.7037 27 6 2.1132 -3.7168 5.2138 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 -0.8901 32 1 3.1301 1.4423 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.6306 -0.5097 -0.8805 36 1 5.8408 -1.5717 -1.0286 37 1 6.6984 -2.9221 0.8400 38 1 5.3547 -3.2144 2.8751 39 1 4.4350 -4.5961 3.3299 40 1 2.9243 -4.8711 2.4183 41 1 3.7791 -6.0012 5.0772 42 1 2.6933 -6.7064 3.8350 43 1 2.3758 -6.1693 6.9082 44 1 1.2053 -7.2883 9.8245 45 1 1.2164 -3.1055 5.3139 46 1 2.7841 -3.5453 6.0556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970539979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:51 Heat of formation + Delta-G solvation = -49.146972 kcal Electronic energy + Delta-G solvation = -26788.408709 eV Core-core repulsion = 23063.931905 eV Total energy + Delta-G solvation = -3724.476804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76440 -40.58481 -38.73233 -38.37093 -35.96489 -34.21715 -33.52425 -32.18513 -31.11323 -30.72955 -29.06163 -28.21816 -26.20606 -24.95488 -24.22201 -23.35696 -21.76642 -21.74747 -20.81425 -19.47620 -19.00007 -18.25822 -17.54242 -16.97718 -16.80427 -16.35911 -16.25604 -15.92908 -15.68914 -15.31936 -15.18831 -14.78748 -14.67087 -14.42604 -14.21166 -13.91647 -13.74296 -13.59080 -13.26133 -13.16309 -13.14606 -12.90042 -12.81034 -12.75849 -12.54008 -12.41668 -12.24364 -12.10394 -11.83695 -11.80119 -11.65165 -11.54982 -11.06285 -10.92496 -10.05037 -9.67031 -9.20467 -9.09491 -7.99337 -5.29326 -0.02070 0.42559 1.46071 1.47566 1.56055 1.69865 1.96834 2.19569 2.53818 2.78076 3.30663 3.49252 3.64026 3.74938 3.77813 3.90853 3.95732 4.02221 4.07773 4.15368 4.24807 4.25520 4.31293 4.41479 4.50367 4.53765 4.63975 4.68797 4.76791 4.79160 4.81895 4.84273 4.90686 4.98789 5.11672 5.17784 5.20267 5.21636 5.28902 5.35865 5.36691 5.49168 5.50413 5.81138 6.22657 6.42907 6.55492 7.10773 7.29943 8.00362 8.26009 9.23321 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.003013 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.854490 B = 9291.245067 C =10453.611711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 C -0.173 4.173 4 O -0.326 6.326 5 C 0.159 3.841 6 C -0.218 4.218 7 C -0.048 4.048 8 C -0.158 4.158 9 C -0.053 4.053 10 C -0.191 4.191 11 C 0.569 3.431 12 O -0.584 6.584 13 N -0.611 5.611 14 C 0.107 3.893 15 C -0.128 4.128 16 C 0.167 3.833 17 H 0.061 0.939 18 N -0.721 5.721 19 C -0.250 4.250 20 H 0.072 0.928 21 C -0.067 4.067 22 N -0.964 5.964 23 Si 0.971 3.029 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.275 1.275 27 C 0.093 3.907 28 H 0.049 0.951 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.157 0.843 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.144 0.856 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.379 0.621 44 H 0.253 0.747 45 H 0.039 0.961 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.063 10.502 -27.091 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.008 3.992 3 C -0.230 4.230 4 O -0.240 6.240 5 C 0.111 3.889 6 C -0.236 4.236 7 C -0.066 4.066 8 C -0.176 4.176 9 C -0.071 4.071 10 C -0.195 4.195 11 C 0.360 3.640 12 O -0.465 6.465 13 N -0.344 5.344 14 C -0.015 4.015 15 C -0.166 4.166 16 C 0.056 3.944 17 H 0.079 0.921 18 N -0.360 5.360 19 C -0.382 4.382 20 H 0.090 0.910 21 C -0.260 4.260 22 N -0.613 5.613 23 Si 0.800 3.200 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.200 1.200 27 C -0.033 4.033 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.067 0.933 35 H 0.174 0.826 36 H 0.185 0.815 37 H 0.180 0.820 38 H 0.161 0.839 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.119 0.881 43 H 0.212 0.788 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.411 11.080 -26.661 30.367 hybrid contribution -0.929 0.063 1.439 1.714 sum 8.482 11.143 -25.222 28.849 Atomic orbital electron populations 1.21907 0.92184 1.02867 1.03674 1.22852 0.96027 0.93444 0.86849 1.22334 1.01976 0.95082 1.03645 1.86281 1.31078 1.66445 1.40166 1.19258 0.85406 0.90408 0.93802 1.21519 0.97211 1.07160 0.97751 1.21591 0.93682 0.92088 0.99224 1.21385 1.01730 1.01628 0.92818 1.21420 0.90913 0.95602 0.99209 1.19222 0.98519 1.07491 0.94279 1.18388 0.80426 0.81223 0.83964 1.90743 1.48851 1.41037 1.65860 1.48460 1.55026 1.07649 1.23254 1.22334 1.00033 0.81540 0.97581 1.22885 0.97579 0.98093 0.98062 1.21433 0.97302 0.89083 0.86587 0.92110 1.42394 1.07799 1.69989 1.15802 1.19598 0.87945 1.31894 0.98762 0.91028 1.25523 1.00724 1.01589 0.98176 1.69795 1.29817 1.46334 1.15401 0.85185 0.79623 0.77959 0.77263 1.20870 1.22027 1.20038 1.22973 0.95482 0.99845 0.85044 0.93210 0.87332 0.92617 0.88550 0.91857 0.88061 0.93291 0.82550 0.81538 0.81964 0.83857 0.88461 0.89931 0.90187 0.88113 0.78765 0.93785 0.94283 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.56 71.98 0.69 -1.92 16 2 C 0.06 1.18 2.83 30.59 0.09 1.27 16 3 C -0.17 -2.67 9.23 71.98 0.66 -2.00 16 4 O -0.33 -9.61 8.68 -76.52 -0.66 -10.28 16 5 C 0.16 4.14 6.60 22.85 0.15 4.29 16 6 C -0.22 -3.63 8.34 22.34 0.19 -3.44 16 7 C -0.05 -0.57 10.03 22.30 0.22 -0.35 16 8 C -0.16 -2.11 10.02 22.24 0.22 -1.89 16 9 C -0.05 -1.07 8.43 22.52 0.19 -0.88 16 10 C -0.19 -5.49 5.41 -20.01 -0.11 -5.60 16 11 C 0.57 21.56 7.19 86.69 0.62 22.18 16 12 O -0.58 -27.73 16.53 9.10 0.15 -27.58 16 13 N -0.61 -21.36 3.33 -815.55 -2.71 -24.07 16 14 C 0.11 2.71 5.90 86.73 0.51 3.22 16 15 C -0.13 -3.72 6.60 31.79 0.21 -3.51 16 16 C 0.17 6.72 3.71 46.39 0.17 6.90 16 17 H 0.06 2.52 8.09 -2.39 -0.02 2.50 16 18 N -0.72 -36.28 5.24 -316.38 -1.66 -37.94 16 19 C -0.25 -14.09 9.96 84.03 0.84 -13.25 16 20 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.96 -58.59 13.06 21.65 0.28 -58.31 16 23 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 C 0.09 3.87 6.63 86.86 0.58 4.45 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.28 6.16 -2.38 -0.01 1.27 16 32 H 0.06 0.95 7.17 -2.39 -0.02 0.93 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.16 1.76 5.52 -2.91 -0.02 1.75 16 36 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 37 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 38 H 0.14 2.55 6.07 -2.91 -0.02 2.54 16 39 H 0.10 1.88 5.69 -2.39 -0.01 1.87 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 2.33 8.00 -2.39 -0.02 2.31 16 42 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 43 H 0.38 20.03 7.76 -92.70 -0.72 19.31 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.04 1.84 7.99 -2.39 -0.02 1.82 16 46 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -79.09 373.51 3.39 -75.70 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.27 Total: 27.62 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 5.70 Total: 6.06 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -4.09 Total: -120.32 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.51 Total: -37.86 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -79.09 3.39 -75.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970539979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.550 kcal (2) G-P(sol) polarization free energy of solvation -79.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds