Wall clock time and date at job start Tue Mar 31 2020 14:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46981 * 2 1 4 4 O 1.42900 * 109.47122 * 119.99613 * 2 1 3 5 5 C 1.35707 * 117.00145 * 84.21712 * 4 2 1 6 6 C 1.39000 * 119.90801 * 4.50832 * 5 4 2 7 7 C 1.37703 * 120.08509 * 179.97438 * 6 5 4 8 8 C 1.39724 * 119.91419 * 0.02562 * 7 6 5 9 9 C 1.47605 * 120.08830 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00417 * 7.44297 * 9 8 7 11 11 N 1.34779 * 120.00100 * 187.44514 * 9 8 7 12 12 C 1.47027 * 125.64865 * 354.23821 * 11 9 8 13 13 C 1.54369 * 107.28993 * 181.12498 * 12 11 9 14 14 C 1.55159 * 102.91958 * 22.14389 * 13 12 11 15 15 H 1.09005 * 111.00399 * 82.63592 * 14 13 12 16 16 N 1.46497 * 111.00294 * 206.44936 * 14 13 12 17 17 C 1.36939 * 119.99915 * 201.82018 * 16 14 13 18 18 H 1.08001 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00132 * 180.02562 * 17 16 14 20 20 N 1.31626 * 119.99894 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00253 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46690 * 269.99651 * 21 19 17 23 23 H 1.48501 * 109.47148 * 29.99276 * 21 19 17 24 24 H 1.48493 * 109.47378 * 149.99751 * 21 19 17 25 25 C 1.47426 * 125.65174 * 174.28262 * 11 9 8 26 26 C 1.39735 * 119.82635 * 0.27337 * 8 7 6 27 27 C 1.37707 * 119.90514 * 359.46453 * 26 8 7 28 28 H 1.09010 * 109.47293 * 300.00189 * 1 2 3 29 29 H 1.08996 * 109.47531 * 60.00027 * 1 2 3 30 30 H 1.09004 * 109.47566 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47436 * 239.99530 * 2 1 3 32 32 H 1.09002 * 109.47122 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46961 * 299.99555 * 3 2 1 34 34 H 1.09002 * 109.47078 * 60.00050 * 3 2 1 35 35 H 1.08000 * 119.95966 * 359.97438 * 6 5 4 36 36 H 1.08005 * 120.04025 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.88193 * 300.51832 * 12 11 9 38 38 H 1.09002 * 109.88139 * 61.52721 * 12 11 9 39 39 H 1.09000 * 110.70898 * 263.79766 * 13 12 11 40 40 H 1.09002 * 110.75171 * 140.50672 * 13 12 11 41 41 H 0.97000 * 120.00111 * 21.82014 * 16 14 13 42 42 H 0.96993 * 119.99684 * 0.02562 * 20 19 17 43 43 H 1.08999 * 110.36521 * 36.99945 * 25 11 9 44 44 H 1.09001 * 110.46218 * 274.72185 * 25 11 9 45 45 H 1.08000 * 120.04801 * 179.70513 * 26 8 7 46 46 H 1.08000 * 119.95178 * 180.25501 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0968 -2.0261 1.1036 6 6 1.8233 -2.6841 -0.0898 7 6 1.9145 -4.0564 -0.1582 8 6 2.2820 -4.7875 0.9743 9 6 2.3805 -6.2587 0.9056 10 8 2.2752 -6.8257 -0.1648 11 7 2.5870 -6.9736 2.0293 12 6 2.8506 -6.4153 3.3637 13 6 3.0497 -7.6047 4.3274 14 6 3.4468 -8.7618 3.3731 15 1 4.5099 -8.7248 3.1353 16 7 3.0842 -10.0613 3.9441 17 6 3.7160 -11.1979 3.5151 18 1 4.4813 -11.1365 2.7556 19 6 3.3721 -12.4293 4.0558 20 7 2.4390 -12.5043 4.9811 21 14 4.2345 -13.9798 3.4711 22 1 3.4914 -14.5560 2.3217 23 1 5.6188 -13.6470 3.0489 24 1 4.2787 -14.9689 4.5779 25 6 2.5871 -8.4448 2.1240 26 6 2.5501 -4.1229 2.1739 27 6 2.4619 -2.7499 2.2327 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.5389 -2.1183 -0.9647 36 1 1.7015 -4.5669 -1.0858 37 1 3.7528 -5.8043 3.3384 38 1 2.0028 -5.8111 3.6868 39 1 2.1218 -7.8370 4.8500 40 1 3.8513 -7.3973 5.0364 41 1 2.3966 -10.1165 4.6260 42 1 1.9915 -11.6992 5.2849 43 1 3.0372 -8.8822 1.2328 44 1 1.5718 -8.8181 2.2576 45 1 2.8298 -4.6849 3.0527 46 1 2.6729 -2.2351 3.1583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970632799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:55 Heat of formation + Delta-G solvation = -9.610567 kcal Electronic energy + Delta-G solvation = -26061.787127 eV Core-core repulsion = 22339.024751 eV Total energy + Delta-G solvation = -3722.762376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.85647 -39.89496 -37.79579 -37.11200 -34.54939 -33.68040 -31.99555 -31.14381 -30.18215 -29.65970 -27.83319 -27.28740 -24.78317 -23.75621 -23.01900 -22.58151 -21.06050 -20.44746 -19.77267 -18.50799 -17.60437 -17.30034 -16.31660 -16.03731 -15.78701 -15.53092 -14.98919 -14.59611 -14.38094 -14.25650 -13.98681 -13.78559 -13.64234 -13.31608 -13.28173 -13.14250 -12.78679 -12.73464 -12.62384 -12.40176 -12.27740 -12.06473 -11.76129 -11.25947 -11.17419 -11.04694 -10.80385 -10.69076 -10.53206 -10.31499 -10.03272 -9.77763 -9.31308 -9.24244 -9.03070 -8.56578 -8.32789 -7.16378 -6.17576 -3.19933 0.77675 1.10348 2.75223 2.86852 3.13890 3.51157 3.55326 3.69080 3.73394 4.23699 4.38511 4.45448 4.51135 4.58149 4.59214 4.66756 4.78536 4.95416 5.03834 5.05097 5.06041 5.17114 5.21423 5.22925 5.29135 5.37553 5.43212 5.58497 5.59879 5.65593 5.66968 5.75474 5.81398 5.91954 5.96557 6.03860 6.13348 6.16520 6.25530 6.37891 6.46670 6.56866 6.77756 7.06909 7.70380 7.75689 8.32059 8.68313 9.11576 9.98152 10.10702 11.30317 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038594 B = 0.002194 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.323806 B =12757.517056 C =13145.462584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 C -0.149 4.149 4 O -0.308 6.308 5 C 0.152 3.848 6 C -0.223 4.223 7 C -0.020 4.020 8 C -0.166 4.166 9 C 0.571 3.429 10 O -0.545 6.545 11 N -0.609 5.609 12 C 0.094 3.906 13 C -0.145 4.145 14 C 0.177 3.823 15 H 0.068 0.932 16 N -0.723 5.723 17 C -0.339 4.339 18 H 0.068 0.932 19 C -0.041 4.041 20 N -0.940 5.940 21 Si 1.083 2.917 22 H -0.294 1.294 23 H -0.294 1.294 24 H -0.287 1.287 25 C 0.082 3.918 26 C -0.084 4.084 27 C -0.163 4.163 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.370 0.630 42 H 0.256 0.744 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.169 0.831 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 28.539 -6.815 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.016 3.984 3 C -0.206 4.206 4 O -0.222 6.222 5 C 0.106 3.894 6 C -0.242 4.242 7 C -0.039 4.039 8 C -0.169 4.169 9 C 0.361 3.639 10 O -0.424 6.424 11 N -0.342 5.342 12 C -0.029 4.029 13 C -0.184 4.184 14 C 0.065 3.935 15 H 0.086 0.914 16 N -0.364 5.364 17 C -0.470 4.470 18 H 0.086 0.914 19 C -0.239 4.239 20 N -0.585 5.585 21 Si 0.914 3.086 22 H -0.222 1.222 23 H -0.220 1.220 24 H -0.213 1.213 25 C -0.043 4.043 26 C -0.102 4.102 27 C -0.181 4.181 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.204 0.796 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.186 0.814 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.482 26.708 -7.239 27.712 hybrid contribution -0.502 1.751 -0.325 1.851 sum -1.984 28.460 -7.564 29.515 Atomic orbital electron populations 1.22364 0.94799 1.03309 1.03258 1.22522 0.94507 0.93740 0.87589 1.21856 1.02199 0.93344 1.03164 1.86099 1.80312 1.16309 1.39453 1.19299 0.93544 0.82519 0.94010 1.21205 1.09964 0.95277 0.97711 1.21052 0.92300 0.92626 0.97890 1.19857 1.08680 0.93172 0.95237 1.17862 0.76893 0.86311 0.82871 1.90766 1.51642 1.72121 1.27908 1.48375 1.69796 1.08643 1.07379 1.22485 1.00158 0.97026 0.83242 1.23026 1.02743 0.94873 0.97748 1.21250 0.96784 0.85448 0.90030 0.91397 1.42311 1.45991 1.01477 1.46608 1.20097 1.18570 0.87076 1.21220 0.91425 1.25822 0.99848 1.00210 0.97982 1.70869 1.26164 1.30671 1.30798 0.83193 0.74682 0.75215 0.75556 1.22169 1.22026 1.21328 1.23400 1.01711 0.76993 1.02154 1.22702 0.94463 0.94070 0.98928 1.20432 1.06871 0.93322 0.97494 0.91343 0.90862 0.91732 0.90534 0.91562 0.90413 0.91380 0.84813 0.84512 0.90615 0.90747 0.90448 0.89918 0.79592 0.93322 0.90776 0.91516 0.81418 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.32 37.16 0.35 -0.71 16 2 C 0.07 0.48 2.87 -26.73 -0.08 0.40 16 3 C -0.15 -0.73 9.56 37.16 0.36 -0.37 16 4 O -0.31 -2.91 9.79 -18.82 -0.18 -3.10 16 5 C 0.15 1.58 6.56 -39.02 -0.26 1.33 16 6 C -0.22 -2.27 8.44 -39.49 -0.33 -2.60 16 7 C -0.02 -0.24 9.58 -39.22 -0.38 -0.62 16 8 C -0.17 -2.27 5.87 -104.96 -0.62 -2.89 16 9 C 0.57 9.75 7.80 -12.44 -0.10 9.65 16 10 O -0.55 -11.24 16.59 5.29 0.09 -11.15 16 11 N -0.61 -9.88 3.33 -176.41 -0.59 -10.47 16 12 C 0.09 1.16 4.87 -3.04 -0.01 1.15 16 13 C -0.15 -2.08 6.59 -24.87 -0.16 -2.24 16 14 C 0.18 3.40 3.70 -65.78 -0.24 3.16 16 15 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 16 N -0.72 -17.39 5.26 -51.35 -0.27 -17.66 16 17 C -0.34 -9.33 9.97 -15.06 -0.15 -9.48 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 20 N -0.94 -28.53 13.70 55.49 0.76 -27.77 16 21 Si 1.08 25.79 29.92 -169.99 -5.09 20.70 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.08 1.58 6.63 -2.53 -0.02 1.57 16 26 C -0.08 -0.94 8.60 -39.22 -0.34 -1.27 16 27 C -0.16 -1.66 9.97 -39.50 -0.39 -2.05 16 28 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.44 7.55 -51.93 -0.39 0.05 16 31 H 0.08 0.46 5.86 -51.93 -0.30 0.16 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.13 1.05 5.75 -52.49 -0.30 0.75 16 36 H 0.14 1.69 7.66 -52.48 -0.40 1.28 16 37 H 0.08 0.78 6.73 -51.93 -0.35 0.43 16 38 H 0.07 0.77 6.73 -51.93 -0.35 0.43 16 39 H 0.08 1.11 8.00 -51.93 -0.42 0.70 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.37 9.08 6.57 -40.82 -0.27 8.81 16 42 H 0.26 7.57 6.77 -40.82 -0.28 7.30 16 43 H 0.07 1.57 7.98 -51.93 -0.41 1.15 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.17 1.60 2.73 -58.60 -0.16 1.44 16 46 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -33.79 369.05 -8.83 -42.62 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.64 Total: 7.50 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.47 Total: -6.25 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.10 Total: -55.89 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.10 Total: -14.25 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.09 Total: 20.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.79 -8.83 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970632799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.011 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds