Wall clock time and date at job start Tue Mar 31 2020 14:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46981 * 2 1 4 4 O 1.42900 * 109.47122 * 119.99613 * 2 1 3 5 5 C 1.35707 * 117.00145 * 84.21712 * 4 2 1 6 6 C 1.39000 * 119.90801 * 4.50832 * 5 4 2 7 7 C 1.37703 * 120.08509 * 179.97438 * 6 5 4 8 8 C 1.39724 * 119.91419 * 0.02562 * 7 6 5 9 9 C 1.47605 * 120.08830 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00417 * 7.44297 * 9 8 7 11 11 N 1.34779 * 120.00100 * 187.44514 * 9 8 7 12 12 C 1.47027 * 125.64865 * 354.23821 * 11 9 8 13 13 C 1.54369 * 107.28993 * 181.12498 * 12 11 9 14 14 C 1.55159 * 102.91958 * 22.14389 * 13 12 11 15 15 H 1.09005 * 111.00399 * 82.63592 * 14 13 12 16 16 N 1.46497 * 111.00294 * 206.44936 * 14 13 12 17 17 C 1.36939 * 119.99915 * 201.82018 * 16 14 13 18 18 H 1.08001 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00132 * 180.02562 * 17 16 14 20 20 N 1.31626 * 119.99894 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00253 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46690 * 269.99651 * 21 19 17 23 23 H 1.48501 * 109.47148 * 29.99276 * 21 19 17 24 24 H 1.48493 * 109.47378 * 149.99751 * 21 19 17 25 25 C 1.47426 * 125.65174 * 174.28262 * 11 9 8 26 26 C 1.39735 * 119.82635 * 0.27337 * 8 7 6 27 27 C 1.37707 * 119.90514 * 359.46453 * 26 8 7 28 28 H 1.09010 * 109.47293 * 300.00189 * 1 2 3 29 29 H 1.08996 * 109.47531 * 60.00027 * 1 2 3 30 30 H 1.09004 * 109.47566 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47436 * 239.99530 * 2 1 3 32 32 H 1.09002 * 109.47122 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46961 * 299.99555 * 3 2 1 34 34 H 1.09002 * 109.47078 * 60.00050 * 3 2 1 35 35 H 1.08000 * 119.95966 * 359.97438 * 6 5 4 36 36 H 1.08005 * 120.04025 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.88193 * 300.51832 * 12 11 9 38 38 H 1.09002 * 109.88139 * 61.52721 * 12 11 9 39 39 H 1.09000 * 110.70898 * 263.79766 * 13 12 11 40 40 H 1.09002 * 110.75171 * 140.50672 * 13 12 11 41 41 H 0.97000 * 120.00111 * 21.82014 * 16 14 13 42 42 H 0.96993 * 119.99684 * 0.02562 * 20 19 17 43 43 H 1.08999 * 110.36521 * 36.99945 * 25 11 9 44 44 H 1.09001 * 110.46218 * 274.72185 * 25 11 9 45 45 H 1.08000 * 120.04801 * 179.70513 * 26 8 7 46 46 H 1.08000 * 119.95178 * 180.25501 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0968 -2.0261 1.1036 6 6 1.8233 -2.6841 -0.0898 7 6 1.9145 -4.0564 -0.1582 8 6 2.2820 -4.7875 0.9743 9 6 2.3805 -6.2587 0.9056 10 8 2.2752 -6.8257 -0.1648 11 7 2.5870 -6.9736 2.0293 12 6 2.8506 -6.4153 3.3637 13 6 3.0497 -7.6047 4.3274 14 6 3.4468 -8.7618 3.3731 15 1 4.5099 -8.7248 3.1353 16 7 3.0842 -10.0613 3.9441 17 6 3.7160 -11.1979 3.5151 18 1 4.4813 -11.1365 2.7556 19 6 3.3721 -12.4293 4.0558 20 7 2.4390 -12.5043 4.9811 21 14 4.2345 -13.9798 3.4711 22 1 3.4914 -14.5560 2.3217 23 1 5.6188 -13.6470 3.0489 24 1 4.2787 -14.9689 4.5779 25 6 2.5871 -8.4448 2.1240 26 6 2.5501 -4.1229 2.1739 27 6 2.4619 -2.7499 2.2327 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.5389 -2.1183 -0.9647 36 1 1.7015 -4.5669 -1.0858 37 1 3.7528 -5.8043 3.3384 38 1 2.0028 -5.8111 3.6868 39 1 2.1218 -7.8370 4.8500 40 1 3.8513 -7.3973 5.0364 41 1 2.3966 -10.1165 4.6260 42 1 1.9915 -11.6992 5.2849 43 1 3.0372 -8.8822 1.2328 44 1 1.5718 -8.8181 2.2576 45 1 2.8298 -4.6849 3.0527 46 1 2.6729 -2.2351 3.1583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970632799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:54 Heat of formation + Delta-G solvation = -31.104476 kcal Electronic energy + Delta-G solvation = -26062.719173 eV Core-core repulsion = 22339.024751 eV Total energy + Delta-G solvation = -3723.694422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.82036 -40.92623 -38.98695 -38.24786 -36.37356 -34.26221 -33.57370 -32.14647 -31.31510 -31.01740 -28.90030 -28.13953 -26.15971 -25.22590 -24.16742 -23.58008 -21.96567 -21.71679 -20.98597 -19.59138 -19.21037 -18.49740 -17.51599 -17.11927 -16.67383 -16.59841 -16.37514 -15.83442 -15.65867 -15.56193 -15.06453 -14.96351 -14.74807 -14.48964 -14.37655 -13.98176 -13.93511 -13.65797 -13.53792 -13.22051 -13.11261 -12.94548 -12.77654 -12.72303 -12.54665 -12.36752 -11.95558 -11.87718 -11.77519 -11.75133 -11.45722 -11.23207 -11.14649 -10.97460 -10.15353 -9.83411 -9.30034 -9.18461 -8.42247 -5.38400 -0.17395 0.27328 1.58283 1.67684 1.72514 1.81982 1.84385 2.13049 2.68719 2.75866 3.31045 3.44100 3.45818 3.67727 3.72343 3.81942 3.85810 3.95514 3.98656 4.08877 4.15295 4.17874 4.22453 4.32243 4.37322 4.49128 4.54732 4.68505 4.73100 4.79194 4.81919 4.87045 4.87225 4.93757 5.03923 5.10835 5.13548 5.17413 5.23051 5.24688 5.29266 5.35034 5.58192 5.59690 6.35168 6.43162 6.48194 6.99978 7.04670 7.93656 8.03073 9.09472 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038594 B = 0.002194 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.323806 B =12757.517056 C =13145.462584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.062 3.938 3 C -0.146 4.146 4 O -0.314 6.314 5 C 0.156 3.844 6 C -0.218 4.218 7 C -0.030 4.030 8 C -0.189 4.189 9 C 0.565 3.435 10 O -0.595 6.595 11 N -0.609 5.609 12 C 0.093 3.907 13 C -0.131 4.131 14 C 0.170 3.830 15 H 0.062 0.938 16 N -0.734 5.734 17 C -0.337 4.337 18 H 0.064 0.936 19 C -0.098 4.098 20 N -0.971 5.971 21 Si 1.127 2.873 22 H -0.289 1.289 23 H -0.273 1.273 24 H -0.290 1.290 25 C 0.093 3.907 26 C -0.075 4.075 27 C -0.163 4.163 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.156 0.844 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.366 0.634 42 H 0.247 0.753 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.186 0.814 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 31.711 -6.347 32.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.007 3.993 3 C -0.203 4.203 4 O -0.228 6.228 5 C 0.109 3.891 6 C -0.236 4.236 7 C -0.050 4.050 8 C -0.192 4.192 9 C 0.357 3.643 10 O -0.478 6.478 11 N -0.341 5.341 12 C -0.028 4.028 13 C -0.169 4.169 14 C 0.059 3.941 15 H 0.080 0.920 16 N -0.375 5.375 17 C -0.468 4.468 18 H 0.082 0.918 19 C -0.290 4.290 20 N -0.619 5.619 21 Si 0.952 3.048 22 H -0.216 1.216 23 H -0.198 1.198 24 H -0.216 1.216 25 C -0.033 4.033 26 C -0.092 4.092 27 C -0.181 4.181 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.173 0.827 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.199 0.801 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.203 0.797 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.901 29.962 -6.764 30.729 hybrid contribution -0.704 0.971 -0.542 1.316 sum -1.604 30.933 -7.307 31.825 Atomic orbital electron populations 1.22360 0.94186 1.02803 1.04168 1.22829 0.95065 0.94486 0.86899 1.21883 1.02040 0.92245 1.04141 1.86114 1.80107 1.15641 1.40935 1.19487 0.92408 0.83181 0.94010 1.21352 1.09205 0.94315 0.98742 1.21074 0.92905 0.93598 0.97374 1.19664 1.11688 0.90812 0.97085 1.18499 0.75793 0.87828 0.82152 1.90727 1.53998 1.73349 1.29750 1.48387 1.69572 1.07153 1.08992 1.22821 1.02994 0.96594 0.80418 1.22966 1.03548 0.92991 0.97445 1.21407 0.96220 0.85258 0.91218 0.92006 1.42425 1.45820 1.02493 1.46763 1.20379 1.17825 0.88390 1.20211 0.91786 1.27134 1.00343 1.03398 0.98155 1.70966 1.27863 1.30386 1.32657 0.82624 0.74874 0.72171 0.75124 1.21587 1.19842 1.21598 1.22961 1.00203 0.79395 1.00773 1.22787 0.93654 0.94543 0.98219 1.20719 1.06000 0.92932 0.98436 0.91543 0.88925 0.92899 0.89879 0.91831 0.88405 0.91476 0.82704 0.85549 0.87408 0.87627 0.90356 0.87464 0.80093 0.94240 0.93888 0.93402 0.79739 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.32 71.98 0.67 -0.97 16 2 C 0.06 0.66 2.87 30.60 0.09 0.75 16 3 C -0.15 -1.03 9.56 71.98 0.69 -0.34 16 4 O -0.31 -5.04 9.79 -90.27 -0.88 -5.93 16 5 C 0.16 2.81 6.56 22.63 0.15 2.96 16 6 C -0.22 -4.04 8.44 22.33 0.19 -3.85 16 7 C -0.03 -0.74 9.58 22.50 0.22 -0.52 16 8 C -0.19 -5.00 5.87 -20.08 -0.12 -5.12 16 9 C 0.56 19.57 7.80 86.72 0.68 20.25 16 10 O -0.60 -25.81 16.59 -3.98 -0.07 -25.87 16 11 N -0.61 -19.59 3.33 -830.30 -2.76 -22.35 16 12 C 0.09 2.03 4.87 86.74 0.42 2.45 16 13 C -0.13 -3.47 6.59 31.80 0.21 -3.26 16 14 C 0.17 6.52 3.70 46.38 0.17 6.69 16 15 H 0.06 2.46 8.11 -2.38 -0.02 2.44 16 16 N -0.73 -35.93 5.26 -316.37 -1.66 -37.59 16 17 C -0.34 -18.83 9.97 84.03 0.84 -17.99 16 18 H 0.06 3.56 7.83 -2.91 -0.02 3.53 16 19 C -0.10 -5.69 5.50 84.86 0.47 -5.23 16 20 N -0.97 -60.03 13.70 21.65 0.30 -59.74 16 21 Si 1.13 52.38 29.92 68.60 2.05 54.44 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 C 0.09 3.69 6.63 86.85 0.58 4.27 16 26 C -0.07 -1.44 8.60 22.51 0.19 -1.25 16 27 C -0.16 -2.76 9.97 22.32 0.22 -2.54 16 28 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.62 7.55 -2.38 -0.02 0.60 16 31 H 0.08 0.77 5.86 -2.39 -0.01 0.76 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.16 2.09 5.75 -2.91 -0.02 2.08 16 36 H 0.13 3.24 7.66 -2.91 -0.02 3.22 16 37 H 0.11 1.76 6.73 -2.39 -0.02 1.74 16 38 H 0.11 1.76 6.73 -2.39 -0.02 1.75 16 39 H 0.08 2.10 8.00 -2.39 -0.02 2.08 16 40 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.37 18.35 6.57 -92.71 -0.61 17.74 16 42 H 0.25 15.05 6.77 -92.71 -0.63 14.42 16 43 H 0.04 1.93 7.98 -2.39 -0.02 1.92 16 44 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.19 2.75 2.73 -8.65 -0.02 2.73 16 46 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -76.33 369.05 3.15 -73.18 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.52 Total: 27.56 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 5.66 Total: -3.69 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -4.13 Total: -119.68 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.95 Total: -31.80 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.05 Total: 54.44 kcal Total: -76.33 3.15 -73.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970632799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.078 kcal (2) G-P(sol) polarization free energy of solvation -76.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds