Wall clock time and date at job start Tue Mar 31 2020 14:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47222 * 2 1 4 4 O 1.21277 * 119.99943 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00123 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00000 * 179.97438 * 5 3 2 7 7 H 1.08998 * 110.28440 * 34.29872 * 6 5 3 8 8 C 1.54258 * 110.31950 * 272.16569 * 6 5 3 9 9 C 1.54380 * 105.06015 * 241.00108 * 8 6 5 10 10 N 1.48559 * 104.59501 * 23.85579 * 9 8 6 11 11 C 1.46898 * 111.00258 * 200.95660 * 10 9 8 12 12 C 1.50697 * 109.46925 * 290.13083 * 11 10 9 13 13 C 1.38300 * 119.92923 * 269.71978 * 12 11 10 14 14 C 1.38104 * 120.06986 * 179.72658 * 13 12 11 15 15 C 1.38876 * 119.92961 * 0.57683 * 14 13 12 16 16 O 1.35747 * 120.07590 * 179.68044 * 15 14 13 17 17 C 1.34829 * 117.00888 * 174.48322 * 16 15 14 18 18 H 1.07998 * 119.99448 * 5.06563 * 17 16 15 19 19 C 1.38647 * 120.00597 * 185.05853 * 17 16 15 20 20 N 1.31563 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00180 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47210 * 60.00129 * 21 19 17 23 23 H 1.48507 * 109.46976 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46927 * 299.99656 * 21 19 17 25 25 C 1.38884 * 119.86202 * 359.70084 * 15 14 13 26 26 C 1.38103 * 119.92780 * 0.02562 * 25 15 14 27 27 C 1.48721 * 104.28897 * 320.57422 * 10 9 8 28 28 H 1.09004 * 109.46932 * 59.99621 * 1 2 3 29 29 H 1.08999 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46884 * 300.00271 * 1 2 3 31 31 H 1.09005 * 109.47376 * 240.00029 * 2 1 3 32 32 H 1.09001 * 109.47321 * 120.00060 * 2 1 3 33 33 H 0.97005 * 119.99695 * 359.97438 * 5 3 2 34 34 H 1.08991 * 110.32994 * 359.89968 * 8 6 5 35 35 H 1.09008 * 110.31688 * 122.00958 * 8 6 5 36 36 H 1.08998 * 110.41061 * 142.64148 * 9 8 6 37 37 H 1.09004 * 110.41209 * 265.07591 * 9 8 6 38 38 H 1.09003 * 109.46917 * 50.12904 * 11 10 9 39 39 H 1.08996 * 109.47061 * 170.12615 * 11 10 9 40 40 H 1.08000 * 119.96524 * 359.97438 * 13 12 11 41 41 H 1.07998 * 120.03889 * 180.27394 * 14 13 12 42 42 H 0.96995 * 119.99791 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.03910 * 180.02562 * 25 15 14 44 44 H 1.08006 * 119.95935 * 180.02562 * 26 25 15 45 45 H 1.08993 * 110.38693 * 280.64002 * 27 10 9 46 46 H 1.09002 * 110.50692 * 158.14313 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 3.8458 3.0483 -0.0011 7 1 3.1757 3.6863 0.5751 8 6 3.9723 3.5712 -1.4468 9 6 5.4686 3.9087 -1.6218 10 7 6.1629 3.0651 -0.6152 11 6 7.4932 3.6045 -0.3037 12 6 8.4010 3.4201 -1.4924 13 6 9.1562 2.2677 -1.6117 14 6 9.9848 2.0932 -2.7027 15 6 10.0682 3.0817 -3.6745 16 8 10.8866 2.9161 -4.7448 17 6 10.8350 3.8594 -5.7068 18 1 10.2249 4.7396 -5.5677 19 6 11.5651 3.6995 -6.8746 20 7 12.3081 2.6270 -7.0442 21 14 11.4941 5.0068 -8.2070 22 1 11.9746 6.3001 -7.6577 23 1 12.3580 4.6013 -9.3448 24 1 10.0938 5.1584 -8.6774 25 6 9.3128 4.2404 -3.5490 26 6 8.4819 4.4064 -2.4585 27 6 5.2757 3.1117 0.5775 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9878 0.9298 -0.0005 34 1 3.6728 2.7997 -2.1561 35 1 3.3629 4.4650 -1.5808 36 1 5.8011 3.6519 -2.6276 37 1 5.6461 4.9651 -1.4200 38 1 7.4096 4.6662 -0.0717 39 1 7.9074 3.0764 0.5552 40 1 9.0949 1.5016 -0.8528 41 1 10.5710 1.1911 -2.7975 42 1 12.8186 2.5150 -7.8613 43 1 9.3752 5.0108 -4.3033 44 1 7.8939 5.3071 -2.3605 45 1 5.4235 4.0428 1.1244 46 1 5.4619 2.2553 1.2256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009786778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:54 Heat of formation + Delta-G solvation = -39.097247 kcal Electronic energy + Delta-G solvation = -25806.041962 eV Core-core repulsion = 22082.000947 eV Total energy + Delta-G solvation = -3724.041015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.29593 -39.23385 -38.46373 -36.57202 -34.48283 -33.10958 -32.37111 -31.45877 -30.20922 -29.21915 -28.27085 -25.67544 -24.77256 -24.25249 -22.03124 -21.37711 -20.97820 -20.44187 -20.23968 -17.98435 -17.47636 -16.92390 -16.61276 -15.97653 -15.67385 -15.32185 -14.71698 -14.54946 -14.37892 -14.04642 -13.90779 -13.68338 -13.53704 -13.33741 -12.88961 -12.74323 -12.66181 -12.41985 -12.12593 -12.04264 -12.02882 -11.82832 -11.62058 -11.46636 -11.26812 -11.18749 -11.02983 -10.74816 -10.64812 -10.55486 -10.44007 -10.02188 -9.34502 -9.29487 -8.84623 -8.50604 -8.17470 -7.18667 -6.46002 -4.04966 2.21771 2.26947 2.43607 2.97027 3.12063 3.13036 3.15962 3.95292 3.99526 4.30919 4.51005 4.58877 4.65482 4.78045 4.80076 4.99883 5.09058 5.11955 5.15809 5.23790 5.27246 5.31489 5.42410 5.48214 5.48888 5.55629 5.62807 5.71225 5.73587 5.76620 5.85951 5.91203 5.95151 6.06863 6.20359 6.31475 6.40860 6.68997 6.76712 6.87991 6.98737 7.06406 7.25393 7.31313 7.38327 7.43545 7.82174 7.98921 8.03134 8.99537 9.69795 10.71912 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.002282 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.821984 B =12266.729225 C =12647.237705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.146 4.146 3 C 0.510 3.490 4 O -0.545 6.545 5 N -0.719 5.719 6 C 0.142 3.858 7 H 0.092 0.908 8 C -0.134 4.134 9 C 0.036 3.964 10 N -0.503 5.503 11 C 0.103 3.897 12 C -0.179 4.179 13 C -0.053 4.053 14 C -0.195 4.195 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.234 4.234 26 C -0.064 4.064 27 C 0.022 3.978 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.405 0.595 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.125 0.875 44 H 0.101 0.899 45 H 0.055 0.945 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.783 -2.129 14.995 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.297 3.703 4 O -0.423 6.423 5 N -0.371 5.371 6 C 0.037 3.963 7 H 0.110 0.890 8 C -0.173 4.173 9 C -0.092 4.092 10 N -0.227 5.227 11 C -0.024 4.024 12 C -0.180 4.180 13 C -0.072 4.072 14 C -0.214 4.214 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.254 4.254 26 C -0.083 4.083 27 C -0.107 4.107 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.240 0.760 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.074 0.926 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.919 -2.273 14.567 22.441 hybrid contribution 0.312 1.212 -0.488 1.344 sum -16.607 -1.060 14.079 21.797 Atomic orbital electron populations 1.21522 0.93081 1.01535 1.03298 1.21643 0.98629 0.93840 1.04441 1.20827 0.82169 0.91872 0.75427 1.90693 1.55379 1.46620 1.49561 1.46133 1.07076 1.08687 1.75198 1.21662 0.94635 0.83293 0.96713 0.88982 1.22771 0.96329 1.01690 0.96518 1.23125 0.92500 0.95264 0.98306 1.65553 1.01548 1.48922 1.06654 1.20951 0.88027 0.97138 0.96286 1.18997 1.03326 0.97114 0.98596 1.20435 0.94723 0.95817 0.96207 1.20211 1.05428 0.99680 0.96071 1.19401 0.89011 0.92735 0.88682 1.83976 1.51720 1.46868 1.25541 1.21263 1.30040 1.00279 0.95234 0.89171 1.25285 0.95817 0.97881 0.97538 1.70029 1.26616 1.26211 1.26887 0.85790 0.78680 0.79610 0.79405 1.19526 1.20264 1.19504 1.21117 1.03294 0.99889 1.01070 1.20579 0.97033 0.97261 0.93429 1.23431 0.91429 1.01727 0.94071 0.91992 0.92117 0.92092 0.88796 0.88970 0.75999 0.90571 0.90873 0.89363 0.93810 0.94638 0.90739 0.87150 0.86609 0.91967 0.85698 0.88044 0.92637 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.15 -0.95 6.42 -27.88 -0.18 -1.13 16 3 C 0.51 5.04 7.83 -10.98 -0.09 4.96 16 4 O -0.55 -7.53 15.66 5.56 0.09 -7.44 16 5 N -0.72 -6.20 4.99 -52.47 -0.26 -6.47 16 6 C 0.14 1.37 3.38 -66.55 -0.22 1.14 16 7 H 0.09 0.96 7.60 -51.93 -0.39 0.56 16 8 C -0.13 -1.43 6.79 -25.35 -0.17 -1.60 16 9 C 0.04 0.43 5.47 -2.18 -0.01 0.41 16 10 N -0.50 -5.84 5.36 -231.27 -1.24 -7.08 16 11 C 0.10 1.30 4.97 -4.98 -0.02 1.27 16 12 C -0.18 -2.91 5.10 -104.58 -0.53 -3.45 16 13 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 14 C -0.19 -4.05 9.99 -39.39 -0.39 -4.45 16 15 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 16 O -0.18 -5.05 9.76 0.06 0.00 -5.05 16 17 C -0.39 -10.90 9.49 30.88 0.29 -10.61 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 21 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 C -0.23 -5.01 9.17 -39.39 -0.36 -5.37 16 26 C -0.06 -1.14 8.72 -39.61 -0.35 -1.48 16 27 C 0.02 0.20 6.12 -2.09 -0.01 0.19 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.40 2.79 8.58 -40.82 -0.35 2.44 16 34 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 35 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.09 1.23 7.81 -51.93 -0.41 0.82 16 37 H 0.04 0.50 7.82 -51.93 -0.41 0.09 16 38 H 0.04 0.43 7.82 -51.93 -0.41 0.02 16 39 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.13 2.69 5.64 -52.48 -0.30 2.39 16 44 H 0.10 1.55 8.05 -52.48 -0.42 1.13 16 45 H 0.06 0.47 8.00 -51.93 -0.42 0.06 16 46 H 0.09 0.69 8.00 -51.93 -0.42 0.27 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -32.24 378.52 -9.55 -41.80 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.13 Total: 5.18 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.45 Total: -17.61 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.74 Total: -38.00 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.24 -9.55 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009786778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.698 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds