Wall clock time and date at job start Tue Mar 31 2020 14:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47222 * 2 1 4 4 O 1.21277 * 119.99943 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00123 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00000 * 179.97438 * 5 3 2 7 7 H 1.08998 * 110.28440 * 34.29872 * 6 5 3 8 8 C 1.54258 * 110.31950 * 272.16569 * 6 5 3 9 9 C 1.54380 * 105.06015 * 241.00108 * 8 6 5 10 10 N 1.48559 * 104.59501 * 23.85579 * 9 8 6 11 11 C 1.46898 * 111.00258 * 200.95660 * 10 9 8 12 12 C 1.50697 * 109.46925 * 290.13083 * 11 10 9 13 13 C 1.38300 * 119.92923 * 269.71978 * 12 11 10 14 14 C 1.38104 * 120.06986 * 179.72658 * 13 12 11 15 15 C 1.38876 * 119.92961 * 0.57683 * 14 13 12 16 16 O 1.35747 * 120.07590 * 179.68044 * 15 14 13 17 17 C 1.34829 * 117.00888 * 174.48322 * 16 15 14 18 18 H 1.07998 * 119.99448 * 5.06563 * 17 16 15 19 19 C 1.38647 * 120.00597 * 185.05853 * 17 16 15 20 20 N 1.31563 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00180 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47210 * 60.00129 * 21 19 17 23 23 H 1.48507 * 109.46976 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46927 * 299.99656 * 21 19 17 25 25 C 1.38884 * 119.86202 * 359.70084 * 15 14 13 26 26 C 1.38103 * 119.92780 * 0.02562 * 25 15 14 27 27 C 1.48721 * 104.28897 * 320.57422 * 10 9 8 28 28 H 1.09004 * 109.46932 * 59.99621 * 1 2 3 29 29 H 1.08999 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46884 * 300.00271 * 1 2 3 31 31 H 1.09005 * 109.47376 * 240.00029 * 2 1 3 32 32 H 1.09001 * 109.47321 * 120.00060 * 2 1 3 33 33 H 0.97005 * 119.99695 * 359.97438 * 5 3 2 34 34 H 1.08991 * 110.32994 * 359.89968 * 8 6 5 35 35 H 1.09008 * 110.31688 * 122.00958 * 8 6 5 36 36 H 1.08998 * 110.41061 * 142.64148 * 9 8 6 37 37 H 1.09004 * 110.41209 * 265.07591 * 9 8 6 38 38 H 1.09003 * 109.46917 * 50.12904 * 11 10 9 39 39 H 1.08996 * 109.47061 * 170.12615 * 11 10 9 40 40 H 1.08000 * 119.96524 * 359.97438 * 13 12 11 41 41 H 1.07998 * 120.03889 * 180.27394 * 14 13 12 42 42 H 0.96995 * 119.99791 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.03910 * 180.02562 * 25 15 14 44 44 H 1.08006 * 119.95935 * 180.02562 * 26 25 15 45 45 H 1.08993 * 110.38693 * 280.64002 * 27 10 9 46 46 H 1.09002 * 110.50692 * 158.14313 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 3.8458 3.0483 -0.0011 7 1 3.1757 3.6863 0.5751 8 6 3.9723 3.5712 -1.4468 9 6 5.4686 3.9087 -1.6218 10 7 6.1629 3.0651 -0.6152 11 6 7.4932 3.6045 -0.3037 12 6 8.4010 3.4201 -1.4924 13 6 9.1562 2.2677 -1.6117 14 6 9.9848 2.0932 -2.7027 15 6 10.0682 3.0817 -3.6745 16 8 10.8866 2.9161 -4.7448 17 6 10.8350 3.8594 -5.7068 18 1 10.2249 4.7396 -5.5677 19 6 11.5651 3.6995 -6.8746 20 7 12.3081 2.6270 -7.0442 21 14 11.4941 5.0068 -8.2070 22 1 11.9746 6.3001 -7.6577 23 1 12.3580 4.6013 -9.3448 24 1 10.0938 5.1584 -8.6774 25 6 9.3128 4.2404 -3.5490 26 6 8.4819 4.4064 -2.4585 27 6 5.2757 3.1117 0.5775 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9878 0.9298 -0.0005 34 1 3.6728 2.7997 -2.1561 35 1 3.3629 4.4650 -1.5808 36 1 5.8011 3.6519 -2.6276 37 1 5.6461 4.9651 -1.4200 38 1 7.4096 4.6662 -0.0717 39 1 7.9074 3.0764 0.5552 40 1 9.0949 1.5016 -0.8528 41 1 10.5710 1.1911 -2.7975 42 1 12.8186 2.5150 -7.8613 43 1 9.3752 5.0108 -4.3033 44 1 7.8939 5.3071 -2.3605 45 1 5.4235 4.0428 1.1244 46 1 5.4619 2.2553 1.2256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009786778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:53 Heat of formation + Delta-G solvation = -61.559293 kcal Electronic energy + Delta-G solvation = -25807.015990 eV Core-core repulsion = 22082.000947 eV Total energy + Delta-G solvation = -3725.015042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.15585 -40.72532 -39.57794 -38.13578 -35.42882 -34.30658 -33.72955 -32.55480 -31.77929 -30.38010 -29.23131 -27.48877 -25.90636 -25.09138 -23.61724 -22.54455 -21.74953 -21.55354 -21.19831 -19.81214 -18.79188 -18.18526 -17.41170 -16.81488 -16.61518 -16.40403 -16.34777 -16.14287 -15.49791 -15.44194 -15.13726 -14.99562 -14.65611 -14.36730 -14.28600 -14.11898 -13.59068 -13.51983 -13.32688 -13.17054 -12.92317 -12.84664 -12.65794 -12.61175 -12.37351 -12.32911 -12.15605 -12.07741 -12.00257 -11.92642 -11.78410 -11.15210 -10.82437 -10.78256 -10.08190 -9.74098 -9.41725 -8.87078 -8.46713 -6.14702 0.63407 0.70765 1.34105 1.44676 1.50216 1.69516 2.17606 2.29318 2.76705 3.05858 3.33804 3.55099 3.56631 3.72638 3.88896 4.06088 4.09264 4.15978 4.25212 4.26506 4.30156 4.32176 4.46270 4.49502 4.63565 4.70548 4.71703 4.76950 4.81937 4.83888 4.91590 5.01911 5.05478 5.09087 5.11459 5.12955 5.16837 5.33639 5.34918 5.55116 5.61651 5.73840 5.79287 5.95344 6.03935 6.05726 6.27279 6.63425 6.98021 7.32700 7.79894 8.76317 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.002282 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.821984 B =12266.729225 C =12647.237705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.505 3.495 4 O -0.591 6.591 5 N -0.710 5.710 6 C 0.144 3.856 7 H 0.085 0.915 8 C -0.130 4.130 9 C 0.037 3.963 10 N -0.511 5.511 11 C 0.105 3.895 12 C -0.151 4.151 13 C -0.046 4.046 14 C -0.206 4.206 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.017 2.983 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.259 1.259 25 C -0.244 4.244 26 C -0.062 4.062 27 C 0.031 3.969 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.416 0.584 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.149 0.851 41 H 0.111 0.889 42 H 0.272 0.728 43 H 0.114 0.886 44 H 0.131 0.869 45 H 0.070 0.930 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.528 -1.801 17.638 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.293 3.707 4 O -0.472 6.472 5 N -0.362 5.362 6 C 0.038 3.962 7 H 0.103 0.897 8 C -0.169 4.169 9 C -0.091 4.091 10 N -0.236 5.236 11 C -0.022 4.022 12 C -0.152 4.152 13 C -0.064 4.064 14 C -0.226 4.226 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.489 4.489 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.836 3.164 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.183 1.183 25 C -0.264 4.264 26 C -0.081 4.081 27 C -0.097 4.097 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.253 0.747 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.166 0.834 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.149 0.851 45 H 0.088 0.912 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.681 -1.959 17.270 25.516 hybrid contribution 0.629 1.070 -0.973 1.577 sum -18.052 -0.889 16.297 24.336 Atomic orbital electron populations 1.21528 0.93766 1.02458 1.01757 1.21695 0.97974 0.91808 1.06465 1.21461 0.82093 0.92816 0.74307 1.90676 1.56495 1.48235 1.51747 1.46089 1.07042 1.08731 1.74352 1.21583 0.95156 0.83716 0.95710 0.89677 1.22699 0.95690 1.01405 0.97122 1.23053 0.93022 0.95775 0.97229 1.65470 1.01510 1.48748 1.07840 1.20991 0.87736 0.98776 0.94738 1.19546 1.01662 0.95327 0.98643 1.20857 0.93067 0.97047 0.95463 1.20483 1.06270 0.99093 0.96711 1.19963 0.90283 0.94807 0.88756 1.83937 1.54677 1.48150 1.27295 1.21742 1.30468 1.00784 0.95876 0.88300 1.26574 0.95192 1.00464 0.99900 1.70178 1.28737 1.28978 1.27988 0.84669 0.79213 0.76602 0.75871 1.18160 1.19584 1.18303 1.21207 1.03932 0.98936 1.02295 1.20907 0.96023 0.98852 0.92290 1.23446 0.89811 1.03363 0.93039 0.93884 0.89896 0.93341 0.87136 0.86292 0.74697 0.91891 0.90872 0.91875 0.92951 0.93059 0.88265 0.83360 0.87070 0.91871 0.86781 0.85074 0.91209 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.20 71.98 0.66 -1.10 16 2 C -0.14 -1.46 6.42 29.85 0.19 -1.27 16 3 C 0.50 9.07 7.83 87.66 0.69 9.76 16 4 O -0.59 -15.98 15.66 -3.02 -0.05 -16.03 16 5 N -0.71 -10.33 4.99 -438.29 -2.19 -12.51 16 6 C 0.14 2.37 3.38 45.89 0.16 2.53 16 7 H 0.09 1.59 7.60 -2.39 -0.02 1.57 16 8 C -0.13 -2.54 6.79 31.49 0.21 -2.33 16 9 C 0.04 0.78 5.47 86.45 0.47 1.26 16 10 N -0.51 -9.70 5.36 -885.61 -4.75 -14.45 16 11 C 0.10 2.09 4.97 85.56 0.43 2.52 16 12 C -0.15 -4.38 5.10 -19.84 -0.10 -4.48 16 13 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 14 C -0.21 -8.68 9.99 22.39 0.22 -8.45 16 15 C 0.11 5.59 6.65 22.58 0.15 5.74 16 16 O -0.23 -14.19 9.76 -22.70 -0.22 -14.41 16 17 C -0.41 -24.22 9.49 67.92 0.64 -23.57 16 18 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 19 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 20 N -0.92 -56.85 13.67 21.61 0.30 -56.55 16 21 Si 1.02 43.16 29.55 68.60 2.03 45.18 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 25 C -0.24 -10.59 9.17 22.39 0.21 -10.39 16 26 C -0.06 -2.07 8.72 22.25 0.19 -1.88 16 27 C 0.03 0.42 6.12 86.42 0.53 0.95 16 28 H 0.04 0.70 8.10 -2.38 -0.02 0.68 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.42 4.25 8.58 -92.70 -0.80 3.46 16 34 H 0.06 1.40 7.95 -2.39 -0.02 1.38 16 35 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.06 1.65 7.81 -2.39 -0.02 1.63 16 37 H 0.05 1.01 7.82 -2.39 -0.02 1.00 16 38 H 0.05 0.93 7.82 -2.39 -0.02 0.91 16 39 H 0.10 1.61 8.07 -2.39 -0.02 1.59 16 40 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.11 5.09 5.64 -2.91 -0.02 5.07 16 44 H 0.13 3.59 8.05 -2.91 -0.02 3.57 16 45 H 0.07 0.82 8.00 -2.39 -0.02 0.80 16 46 H 0.11 1.10 8.00 -2.39 -0.02 1.08 16 Total: -1.00 -76.62 378.52 0.64 -75.98 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.19 Total: 25.67 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 5.33 Total: -32.89 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -6.64 Total: -83.51 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.27 Total: -30.43 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -76.62 0.64 -75.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009786778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.422 kcal (2) G-P(sol) polarization free energy of solvation -76.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds