Wall clock time and date at job start Tue Mar 31 2020 14:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 O 1.42905 * 109.47079 * 179.97438 * 3 2 1 5 5 C 1.35914 * 116.99646 * 180.02562 * 4 3 2 6 6 C 1.38850 * 119.98801 * 0.02562 * 5 4 3 7 7 C 1.38237 * 120.24161 * 179.97438 * 6 5 4 8 8 C 1.38013 * 120.20334 * 0.02562 * 7 6 5 9 9 C 1.39560 * 119.96904 * 0.02562 * 8 7 6 10 10 C 1.47857 * 120.12079 * 180.02562 * 9 8 7 11 11 O 1.21547 * 120.00200 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99857 * 359.97438 * 10 9 8 13 13 C 1.46496 * 119.99862 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.88941 * 328.88586 * 13 12 10 15 15 C 1.55161 * 111.00341 * 204.99771 * 13 12 10 16 16 C 1.54320 * 102.94443 * 277.43006 * 15 13 12 17 17 N 1.47030 * 107.26989 * 337.80282 * 16 15 13 18 18 C 1.36933 * 125.64293 * 178.98180 * 17 16 15 19 19 H 1.08008 * 119.99682 * 179.97438 * 18 17 16 20 20 C 1.38810 * 120.00478 * 359.97438 * 18 17 16 21 21 N 1.31618 * 119.99949 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00079 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47092 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47176 * 119.99812 * 22 20 18 25 25 H 1.48502 * 109.47106 * 239.99962 * 22 20 18 26 26 C 1.47419 * 108.70234 * 358.94732 * 17 16 15 27 27 C 1.38448 * 119.97821 * 179.72568 * 5 4 3 28 28 H 1.09000 * 109.47054 * 59.99902 * 1 2 3 29 29 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47452 * 300.00062 * 1 2 3 31 31 H 1.09004 * 109.47298 * 240.00221 * 2 1 3 32 32 H 1.09004 * 109.47552 * 120.00092 * 2 1 3 33 33 H 1.09004 * 109.46930 * 59.99996 * 3 2 1 34 34 H 1.09000 * 109.47312 * 299.99939 * 3 2 1 35 35 H 1.08003 * 119.87630 * 359.97438 * 6 5 4 36 36 H 1.07999 * 119.89895 * 180.02562 * 7 6 5 37 37 H 1.08000 * 120.01403 * 180.02562 * 8 7 6 38 38 H 0.97004 * 120.00091 * 0.02562 * 12 10 9 39 39 H 1.09005 * 110.71815 * 35.79345 * 15 13 12 40 40 H 1.09000 * 110.71817 * 158.88694 * 15 13 12 41 41 H 1.08998 * 109.88369 * 97.22608 * 16 15 13 42 42 H 1.09004 * 109.87958 * 218.39089 * 16 15 13 43 43 H 0.97001 * 119.99695 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.36187 * 265.28289 * 26 17 16 45 45 H 1.09002 * 110.36892 * 142.96377 * 26 17 16 46 46 H 1.08002 * 120.10718 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0859 2.6536 0.0012 6 6 3.3294 3.8179 0.0018 7 6 3.9514 5.0524 0.0030 8 6 5.3290 5.1357 0.0030 9 6 6.0979 3.9710 0.0014 10 6 7.5740 4.0564 0.0020 11 8 8.2415 3.0406 0.0001 12 7 8.1793 5.2606 0.0037 13 6 9.6418 5.3452 0.0038 14 1 10.0802 4.4965 0.5288 15 6 10.1213 6.6871 0.6178 16 6 10.0067 7.6696 -0.5667 17 7 10.0384 6.8711 -1.8009 18 6 9.9420 7.3658 -3.0741 19 1 9.9764 6.6935 -3.9187 20 6 9.8000 8.7313 -3.2793 21 7 9.7575 9.5506 -2.2500 22 14 9.6692 9.4062 -5.0162 23 1 9.7439 8.2867 -5.9891 24 1 8.3742 10.1155 -5.1755 25 1 10.7860 10.3529 -5.2649 26 6 10.1920 5.4499 -1.4405 27 6 5.4685 2.7257 0.0076 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 2.2509 3.7587 0.0013 36 1 3.3575 5.9545 0.0038 37 1 5.8118 6.1018 0.0044 38 1 7.6466 6.0712 0.0048 39 1 9.4687 6.9917 1.4360 40 1 11.1536 6.6082 0.9585 41 1 9.0668 8.2180 -0.5039 42 1 10.8458 8.3653 -0.5537 43 1 9.6587 10.5048 -2.3935 44 1 11.2433 5.1632 -1.4678 45 1 9.6092 4.8224 -2.1149 46 1 6.0582 1.8208 0.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014609464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:07 Heat of formation + Delta-G solvation = -28.717845 kcal Electronic energy + Delta-G solvation = -26104.322217 eV Core-core repulsion = 22380.731286 eV Total energy + Delta-G solvation = -3723.590930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51326 -39.47381 -37.66802 -36.89773 -34.31791 -33.76158 -31.99144 -31.16163 -30.07753 -29.09377 -27.24011 -26.92776 -24.67037 -23.80964 -22.52625 -21.92570 -20.60054 -20.09120 -19.77126 -18.61943 -16.93312 -16.63623 -16.60185 -16.30652 -15.86933 -15.54711 -14.75107 -14.66468 -14.39956 -14.27311 -14.00492 -13.75608 -13.74183 -13.19557 -12.90830 -12.74273 -12.55158 -12.35385 -12.02848 -11.92681 -11.78914 -11.62594 -11.60541 -11.04509 -10.97428 -10.93908 -10.90900 -10.71322 -10.36663 -10.11252 -9.95232 -9.68549 -9.65646 -9.14368 -8.74170 -8.52580 -8.37966 -6.82505 -5.72800 -3.05114 0.78446 1.30118 2.83314 2.98619 3.38895 3.45448 3.47459 3.52232 3.87598 4.43635 4.46269 4.49770 4.63408 4.70374 4.78460 4.89391 4.99136 5.02311 5.08870 5.19737 5.28318 5.33601 5.41496 5.47423 5.50091 5.53068 5.63360 5.75315 5.77681 5.81904 5.84339 6.08293 6.19528 6.25086 6.27513 6.37050 6.46194 6.51654 6.52510 6.70462 7.04206 7.20942 7.52909 7.55432 7.79033 7.86684 8.23976 8.49447 9.21624 9.81404 10.47152 11.39239 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.002668 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.171433 B =10493.743997 C =11331.710441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.058 3.942 4 O -0.314 6.314 5 C 0.119 3.881 6 C -0.189 4.189 7 C -0.086 4.086 8 C -0.120 4.120 9 C -0.088 4.088 10 C 0.556 3.444 11 O -0.544 6.544 12 N -0.696 5.696 13 C 0.127 3.873 14 H 0.092 0.908 15 C -0.154 4.154 16 C 0.175 3.825 17 N -0.604 5.604 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.924 5.924 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.125 3.875 27 C -0.095 4.095 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.403 0.597 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.251 0.749 44 H 0.029 0.971 45 H 0.043 0.957 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.968 -12.720 8.641 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.228 6.228 5 C 0.074 3.926 6 C -0.208 4.208 7 C -0.104 4.104 8 C -0.139 4.139 9 C -0.091 4.091 10 C 0.343 3.657 11 O -0.423 6.423 12 N -0.346 5.346 13 C 0.022 3.978 14 H 0.110 0.890 15 C -0.193 4.193 16 C 0.051 3.949 17 N -0.331 5.331 18 C -0.351 4.351 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.572 5.572 22 Si 0.742 3.258 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.003 4.003 27 C -0.114 4.114 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.239 0.761 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.401 -13.415 8.529 22.840 hybrid contribution -0.545 1.154 -1.007 1.625 sum -16.945 -12.261 7.522 22.228 Atomic orbital electron populations 1.21691 0.94246 1.02559 1.02216 1.21490 0.95993 0.94843 1.03874 1.22888 0.78525 0.98894 1.01435 1.86073 1.21186 1.26756 1.88829 1.18786 0.91928 0.84243 0.97644 1.21388 1.00082 0.92398 1.06931 1.20888 0.94347 0.97188 0.98006 1.21330 0.94053 0.97922 1.00548 1.19793 0.93344 0.93339 1.02599 1.18120 0.86967 0.83853 0.76756 1.90743 1.65949 1.35001 1.50564 1.45761 1.07931 1.07796 1.73093 1.22186 0.78915 0.98504 0.98223 0.88996 1.23236 1.00798 0.95589 0.99660 1.21177 1.01151 0.90752 0.81855 1.44492 1.86238 0.99884 1.02476 1.19111 1.42457 0.90981 0.82506 0.90484 1.24775 1.02442 0.95929 0.97451 1.69960 1.57142 1.02436 1.27662 0.86053 0.77229 0.78778 0.83788 1.20553 1.21826 1.21800 1.21954 0.97296 0.88064 0.92943 1.20449 0.91178 0.98316 1.01459 0.92335 0.91705 0.92368 0.90711 0.90753 0.92018 0.91960 0.85316 0.85054 0.85011 0.76109 0.91576 0.90839 0.93617 0.93709 0.93883 0.95318 0.93876 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.12 -0.80 6.30 -26.73 -0.17 -0.97 16 3 C 0.06 0.45 4.74 37.16 0.18 0.63 16 4 O -0.31 -3.64 10.13 -19.47 -0.20 -3.83 16 5 C 0.12 1.48 6.68 -39.28 -0.26 1.22 16 6 C -0.19 -2.00 9.03 -39.36 -0.36 -2.35 16 7 C -0.09 -0.93 10.03 -39.66 -0.40 -1.33 16 8 C -0.12 -1.52 9.54 -39.17 -0.37 -1.90 16 9 C -0.09 -1.30 5.87 -104.98 -0.62 -1.92 16 10 C 0.56 9.69 7.77 -12.32 -0.10 9.59 16 11 O -0.54 -10.95 15.99 5.32 0.09 -10.87 16 12 N -0.70 -11.83 5.14 -52.67 -0.27 -12.10 16 13 C 0.13 2.30 3.43 -65.78 -0.23 2.08 16 14 H 0.09 1.62 7.54 -51.93 -0.39 1.22 16 15 C -0.15 -2.72 6.55 -24.90 -0.16 -2.88 16 16 C 0.18 4.05 5.36 -3.06 -0.02 4.03 16 17 N -0.60 -15.15 3.39 -170.07 -0.58 -15.72 16 18 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 19 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -26.52 10.31 55.49 0.57 -25.94 16 22 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.12 2.68 6.93 -2.53 -0.02 2.66 16 27 C -0.09 -1.36 9.53 -39.02 -0.37 -1.73 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 34 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 35 H 0.13 1.01 6.28 -52.48 -0.33 0.68 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.13 1.56 6.40 -52.49 -0.34 1.23 16 38 H 0.40 6.43 6.70 -40.82 -0.27 6.16 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.14 7.38 -51.93 -0.38 0.76 16 42 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.14 2.13 7.65 -52.49 -0.40 1.72 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -32.29 375.52 -9.60 -41.89 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.07 Total: 3.76 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.77 Total: 0.11 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.28 Total: -53.77 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.11 Total: -14.70 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.29 -9.60 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014609464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.169 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds