Wall clock time and date at job start Tue Mar 31 2020 14:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 O 1.42905 * 109.47079 * 179.97438 * 3 2 1 5 5 C 1.35914 * 116.99646 * 180.02562 * 4 3 2 6 6 C 1.38850 * 119.98801 * 0.02562 * 5 4 3 7 7 C 1.38237 * 120.24161 * 179.97438 * 6 5 4 8 8 C 1.38013 * 120.20334 * 0.02562 * 7 6 5 9 9 C 1.39560 * 119.96904 * 0.02562 * 8 7 6 10 10 C 1.47857 * 120.12079 * 180.02562 * 9 8 7 11 11 O 1.21547 * 120.00200 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99857 * 359.97438 * 10 9 8 13 13 C 1.46496 * 119.99862 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.88941 * 328.88586 * 13 12 10 15 15 C 1.55161 * 111.00341 * 204.99771 * 13 12 10 16 16 C 1.54320 * 102.94443 * 277.43006 * 15 13 12 17 17 N 1.47030 * 107.26989 * 337.80282 * 16 15 13 18 18 C 1.36933 * 125.64293 * 178.98180 * 17 16 15 19 19 H 1.08008 * 119.99682 * 179.97438 * 18 17 16 20 20 C 1.38810 * 120.00478 * 359.97438 * 18 17 16 21 21 N 1.31618 * 119.99949 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00079 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47092 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47176 * 119.99812 * 22 20 18 25 25 H 1.48502 * 109.47106 * 239.99962 * 22 20 18 26 26 C 1.47419 * 108.70234 * 358.94732 * 17 16 15 27 27 C 1.38448 * 119.97821 * 179.72568 * 5 4 3 28 28 H 1.09000 * 109.47054 * 59.99902 * 1 2 3 29 29 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47452 * 300.00062 * 1 2 3 31 31 H 1.09004 * 109.47298 * 240.00221 * 2 1 3 32 32 H 1.09004 * 109.47552 * 120.00092 * 2 1 3 33 33 H 1.09004 * 109.46930 * 59.99996 * 3 2 1 34 34 H 1.09000 * 109.47312 * 299.99939 * 3 2 1 35 35 H 1.08003 * 119.87630 * 359.97438 * 6 5 4 36 36 H 1.07999 * 119.89895 * 180.02562 * 7 6 5 37 37 H 1.08000 * 120.01403 * 180.02562 * 8 7 6 38 38 H 0.97004 * 120.00091 * 0.02562 * 12 10 9 39 39 H 1.09005 * 110.71815 * 35.79345 * 15 13 12 40 40 H 1.09000 * 110.71817 * 158.88694 * 15 13 12 41 41 H 1.08998 * 109.88369 * 97.22608 * 16 15 13 42 42 H 1.09004 * 109.87958 * 218.39089 * 16 15 13 43 43 H 0.97001 * 119.99695 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.36187 * 265.28289 * 26 17 16 45 45 H 1.09002 * 110.36892 * 142.96377 * 26 17 16 46 46 H 1.08002 * 120.10718 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0859 2.6536 0.0012 6 6 3.3294 3.8179 0.0018 7 6 3.9514 5.0524 0.0030 8 6 5.3290 5.1357 0.0030 9 6 6.0979 3.9710 0.0014 10 6 7.5740 4.0564 0.0020 11 8 8.2415 3.0406 0.0001 12 7 8.1793 5.2606 0.0037 13 6 9.6418 5.3452 0.0038 14 1 10.0802 4.4965 0.5288 15 6 10.1213 6.6871 0.6178 16 6 10.0067 7.6696 -0.5667 17 7 10.0384 6.8711 -1.8009 18 6 9.9420 7.3658 -3.0741 19 1 9.9764 6.6935 -3.9187 20 6 9.8000 8.7313 -3.2793 21 7 9.7575 9.5506 -2.2500 22 14 9.6692 9.4062 -5.0162 23 1 9.7439 8.2867 -5.9891 24 1 8.3742 10.1155 -5.1755 25 1 10.7860 10.3529 -5.2649 26 6 10.1920 5.4499 -1.4405 27 6 5.4685 2.7257 0.0076 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 2.2509 3.7587 0.0013 36 1 3.3575 5.9545 0.0038 37 1 5.8118 6.1018 0.0044 38 1 7.6466 6.0712 0.0048 39 1 9.4687 6.9917 1.4360 40 1 11.1536 6.6082 0.9585 41 1 9.0668 8.2180 -0.5039 42 1 10.8458 8.3653 -0.5537 43 1 9.6587 10.5048 -2.3935 44 1 11.2433 5.1632 -1.4678 45 1 9.6092 4.8224 -2.1149 46 1 6.0582 1.8208 0.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014609464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:06 Heat of formation + Delta-G solvation = -48.227597 kcal Electronic energy + Delta-G solvation = -26105.168223 eV Core-core repulsion = 22380.731286 eV Total energy + Delta-G solvation = -3724.436937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.57134 -40.67438 -39.04379 -38.13239 -35.49552 -34.83173 -33.73566 -32.23553 -31.27620 -30.69288 -28.92475 -27.52208 -26.52856 -24.98957 -23.46555 -22.66717 -22.00866 -21.66241 -21.21976 -19.71321 -18.83255 -17.78722 -17.45473 -17.25965 -16.99342 -16.74640 -16.52843 -16.08737 -15.67258 -15.56957 -15.05771 -14.85411 -14.82361 -14.63614 -14.09479 -13.84963 -13.63661 -13.59340 -13.37529 -13.07371 -12.90076 -12.83138 -12.76316 -12.34595 -12.30502 -12.25615 -12.10302 -11.99367 -11.81933 -11.78158 -11.60015 -11.53256 -11.05905 -10.72599 -10.24764 -9.99580 -9.31124 -8.86057 -7.84964 -5.18977 -0.25295 0.35482 1.45729 1.46626 1.56652 1.78029 1.93919 2.34298 2.49203 2.79879 3.33810 3.58785 3.67051 3.74742 3.81319 3.94884 3.95924 4.05408 4.06952 4.13051 4.24387 4.29579 4.31755 4.45914 4.56495 4.57897 4.67874 4.72923 4.80675 4.87229 4.88723 4.96539 5.03818 5.12956 5.17835 5.18844 5.26045 5.33415 5.35352 5.44895 5.51716 5.62513 5.68476 5.77315 6.20330 6.38165 6.51320 7.12329 7.13664 7.77054 8.41439 9.25125 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.002668 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.171433 B =10493.743997 C =11331.710441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.049 3.951 4 O -0.332 6.332 5 C 0.116 3.884 6 C -0.176 4.176 7 C -0.079 4.079 8 C -0.124 4.124 9 C -0.107 4.107 10 C 0.556 3.444 11 O -0.579 6.579 12 N -0.693 5.693 13 C 0.138 3.862 14 H 0.104 0.896 15 C -0.133 4.133 16 C 0.184 3.816 17 N -0.620 5.620 18 C -0.240 4.240 19 H 0.072 0.928 20 C -0.059 4.059 21 N -0.945 5.945 22 Si 0.974 3.026 23 H -0.273 1.273 24 H -0.288 1.288 25 H -0.292 1.292 26 C 0.122 3.878 27 C -0.115 4.115 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.138 0.862 38 H 0.408 0.592 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.023 0.977 42 H 0.011 0.989 43 H 0.248 0.752 44 H 0.034 0.966 45 H 0.026 0.974 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.352 -12.503 9.120 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.026 4.026 4 O -0.247 6.247 5 C 0.070 3.930 6 C -0.194 4.194 7 C -0.097 4.097 8 C -0.143 4.143 9 C -0.110 4.110 10 C 0.344 3.656 11 O -0.460 6.460 12 N -0.342 5.342 13 C 0.033 3.967 14 H 0.122 0.878 15 C -0.172 4.172 16 C 0.059 3.941 17 N -0.347 5.347 18 C -0.369 4.369 19 H 0.090 0.910 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.803 3.197 23 H -0.198 1.198 24 H -0.215 1.215 25 H -0.219 1.219 26 C -0.005 4.005 27 C -0.135 4.135 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.156 0.844 38 H 0.245 0.755 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.041 0.959 42 H 0.029 0.971 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.800 -13.213 9.019 24.685 hybrid contribution 0.127 1.017 -1.173 1.557 sum -18.673 -12.196 7.846 23.643 Atomic orbital electron populations 1.21676 0.92600 1.03187 1.02842 1.21515 0.97291 0.94036 1.03311 1.23211 0.76546 1.00064 1.02736 1.86068 1.23366 1.26595 1.88667 1.18834 0.91370 0.85393 0.97355 1.21767 1.01671 0.91386 1.04614 1.21282 0.93598 0.98612 0.96214 1.21480 0.95111 0.97249 1.00473 1.19614 0.91802 0.94485 1.05120 1.18552 0.88159 0.83247 0.75615 1.90712 1.67012 1.36034 1.52240 1.45724 1.07503 1.08095 1.72926 1.22029 0.79670 0.99189 0.95839 0.87786 1.23098 1.02768 0.93298 0.98036 1.20973 0.98483 0.91337 0.83312 1.44711 1.86074 1.01549 1.02370 1.19368 1.42394 0.91351 0.83768 0.91028 1.25520 1.02593 0.96154 1.01022 1.70145 1.57729 1.02286 1.29234 0.85079 0.76904 0.77966 0.79774 1.19808 1.21519 1.21908 1.22061 0.97496 0.86049 0.94851 1.20396 0.92396 0.97570 1.03159 0.91812 0.91153 0.91596 0.91483 0.91223 0.90398 0.90751 0.81940 0.81709 0.84423 0.75455 0.88693 0.88922 0.95898 0.97103 0.94279 0.94825 0.95575 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 71.98 0.71 -0.32 16 2 C -0.12 -1.41 6.30 30.59 0.19 -1.22 16 3 C 0.05 0.65 4.74 71.98 0.34 1.00 16 4 O -0.33 -7.37 10.13 -92.58 -0.94 -8.31 16 5 C 0.12 2.76 6.68 22.47 0.15 2.91 16 6 C -0.18 -3.17 9.03 22.42 0.20 -2.97 16 7 C -0.08 -1.46 10.03 22.22 0.22 -1.24 16 8 C -0.12 -2.98 9.54 22.54 0.21 -2.77 16 9 C -0.11 -3.20 5.87 -20.10 -0.12 -3.31 16 10 C 0.56 19.62 7.77 86.79 0.67 20.29 16 11 O -0.58 -23.97 15.99 -3.86 -0.06 -24.03 16 12 N -0.69 -23.36 5.14 -438.82 -2.25 -25.61 16 13 C 0.14 4.93 3.43 46.39 0.16 5.09 16 14 H 0.10 3.54 7.54 -2.39 -0.02 3.52 16 15 C -0.13 -4.52 6.55 31.78 0.21 -4.31 16 16 C 0.18 8.56 5.36 86.73 0.47 9.02 16 17 N -0.62 -31.58 3.39 -691.98 -2.35 -33.93 16 18 C -0.24 -13.52 10.28 84.03 0.86 -12.66 16 19 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 21 N -0.94 -55.02 10.31 21.65 0.22 -54.79 16 22 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 C 0.12 5.29 6.93 86.86 0.60 5.89 16 27 C -0.12 -3.38 9.53 22.63 0.22 -3.16 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.80 7.66 -2.38 -0.02 0.78 16 34 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 35 H 0.16 1.80 6.28 -2.91 -0.02 1.78 16 36 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.14 3.07 6.40 -2.91 -0.02 3.05 16 38 H 0.41 12.82 6.70 -92.71 -0.62 12.20 16 39 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 40 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.02 1.16 7.38 -2.39 -0.02 1.14 16 42 H 0.01 0.57 7.51 -2.39 -0.02 0.55 16 43 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.12 3.97 7.65 -2.91 -0.02 3.95 16 Total: -1.00 -71.60 375.52 2.58 -69.02 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.36 Total: 20.58 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 5.57 Total: 9.36 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -4.38 Total: -114.33 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.00 Total: -32.34 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.60 2.58 -69.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014609464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.794 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds