Wall clock time and date at job start Tue Mar 31 2020 14:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47418 * 2 1 4 4 O 1.42902 * 109.47010 * 119.99987 * 2 1 3 5 5 C 1.35718 * 117.00046 * 155.09377 * 4 2 1 6 6 C 1.38998 * 119.90732 * 5.45723 * 5 4 2 7 7 C 1.37708 * 120.08334 * 179.97438 * 6 5 4 8 8 C 1.39732 * 119.91377 * 0.02562 * 7 6 5 9 9 C 1.47601 * 120.08680 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00405 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99881 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00157 * 180.02562 * 11 9 8 13 13 H 1.08996 * 110.88747 * 34.29521 * 12 11 9 14 14 C 1.55156 * 111.00562 * 158.17682 * 12 11 9 15 15 C 1.54328 * 102.94069 * 153.60999 * 14 12 11 16 16 N 1.47022 * 107.27265 * 337.80921 * 15 14 12 17 17 C 1.36937 * 125.64751 * 178.97936 * 16 15 14 18 18 H 1.07996 * 119.99923 * 179.97438 * 17 16 15 19 19 C 1.38808 * 119.99891 * 359.96720 * 17 16 15 20 20 N 1.31622 * 120.00332 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47099 * 90.00328 * 21 19 17 23 23 H 1.48503 * 109.47015 * 210.00429 * 21 19 17 24 24 H 1.48496 * 109.47328 * 330.00454 * 21 19 17 25 25 C 1.47526 * 108.71519 * 358.93920 * 16 15 14 26 26 C 1.39739 * 119.82098 * 0.27937 * 8 7 6 27 27 C 1.37701 * 119.91234 * 359.40215 * 26 8 7 28 28 H 1.09004 * 109.46695 * 300.00023 * 1 2 3 29 29 H 1.08999 * 109.47587 * 60.00048 * 1 2 3 30 30 H 1.09005 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47353 * 239.99684 * 2 1 3 32 32 H 1.09005 * 109.47548 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46975 * 300.00130 * 3 2 1 34 34 H 1.08996 * 109.47580 * 59.99553 * 3 2 1 35 35 H 1.07994 * 119.95785 * 359.97438 * 6 5 4 36 36 H 1.07996 * 120.03936 * 180.02562 * 7 6 5 37 37 H 0.97002 * 119.99751 * 359.97438 * 11 9 8 38 38 H 1.08995 * 110.71778 * 271.97725 * 14 12 11 39 39 H 1.09006 * 110.71620 * 35.07334 * 14 12 11 40 40 H 1.08999 * 109.87927 * 97.22490 * 15 14 12 41 41 H 1.08997 * 109.88198 * 218.38818 * 15 14 12 42 42 H 0.97002 * 120.00304 * 179.97438 * 20 19 17 43 43 H 1.09002 * 110.37389 * 265.31090 * 25 16 15 44 44 H 1.09001 * 110.41132 * 142.95187 * 25 16 15 45 45 H 1.08001 * 120.04148 * 179.72062 * 26 8 7 46 46 H 1.07995 * 119.95425 * 180.34415 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2457 -1.2224 1.0987 6 6 4.0336 -1.0170 -0.0279 7 6 5.2919 -1.5716 -0.1006 8 6 5.7762 -2.3420 0.9597 9 6 7.1247 -2.9378 0.8860 10 8 7.8158 -2.7581 -0.0980 11 7 7.5898 -3.6811 1.9096 12 6 8.9284 -4.2720 1.8368 13 1 9.6131 -3.6178 1.2971 14 6 9.4706 -4.5973 3.2536 15 6 10.4581 -5.7534 2.9888 16 7 10.0706 -6.3750 1.7140 17 6 10.7090 -7.4265 1.1123 18 1 10.3444 -7.8130 0.1721 19 6 11.8246 -7.9956 1.7109 20 7 12.2687 -7.5248 2.8571 21 14 12.6958 -9.4295 0.8898 22 1 13.7532 -8.9132 -0.0161 23 1 13.3121 -10.2943 1.9279 24 1 11.7147 -10.2210 0.1049 25 6 8.8797 -5.6791 1.1907 26 6 4.9785 -2.5513 2.0878 27 6 3.7238 -1.9879 2.1557 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.6584 -0.4218 -0.8472 36 1 5.9036 -1.4113 -0.9761 37 1 7.0386 -3.8241 2.6948 38 1 9.9890 -3.7362 3.6752 39 1 8.6629 -4.9194 3.9110 40 1 11.4738 -5.3643 2.9179 41 1 10.3949 -6.4864 3.7930 42 1 13.0481 -7.9227 3.2755 43 1 7.9719 -6.2029 1.4903 44 1 8.9322 -5.6000 0.1048 45 1 5.3475 -3.1500 2.9074 46 1 3.1089 -2.1446 3.0295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016179519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:15 Heat of formation + Delta-G solvation = -45.378233 kcal Electronic energy + Delta-G solvation = -25833.750370 eV Core-core repulsion = 22109.436991 eV Total energy + Delta-G solvation = -3724.313379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60398 -40.77195 -39.08469 -38.14425 -35.68895 -34.24541 -33.82838 -32.04553 -31.36313 -30.71106 -28.76294 -28.13732 -26.52735 -24.88504 -24.07676 -22.39040 -22.00217 -21.91259 -21.17470 -19.55617 -19.05069 -18.44112 -17.54261 -16.86177 -16.65349 -16.43858 -16.10554 -16.09026 -15.74458 -15.52808 -14.93715 -14.73145 -14.60765 -14.27029 -14.13284 -14.00598 -13.75374 -13.68263 -13.49300 -13.16342 -13.09452 -12.96524 -12.78940 -12.73886 -12.40157 -12.14931 -12.12964 -12.03967 -11.81826 -11.74311 -11.59258 -11.55705 -11.03320 -10.72666 -10.17093 -10.10625 -9.26834 -8.92668 -7.87042 -5.23216 -0.13268 0.31056 1.45029 1.47538 1.56082 1.81931 2.08271 2.15047 2.49847 2.82938 3.31294 3.64385 3.66787 3.70979 3.78676 3.87770 3.93164 3.99902 4.05099 4.14845 4.19651 4.20241 4.34935 4.49807 4.58898 4.70566 4.72374 4.80940 4.83984 4.87080 4.89243 4.97161 4.97694 5.05548 5.14214 5.20939 5.25616 5.31755 5.34296 5.41501 5.50811 5.62428 5.64171 5.73298 6.17812 6.37678 6.56412 7.08526 7.22487 7.73581 8.37155 9.22981 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036438 B = 0.002092 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.235273 B =13383.898801 C =13557.566363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.065 3.935 3 C -0.180 4.180 4 O -0.316 6.316 5 C 0.155 3.845 6 C -0.217 4.217 7 C -0.030 4.030 8 C -0.190 4.190 9 C 0.558 3.442 10 O -0.587 6.587 11 N -0.698 5.698 12 C 0.146 3.854 13 H 0.074 0.926 14 C -0.127 4.127 15 C 0.184 3.816 16 N -0.626 5.626 17 C -0.247 4.247 18 H 0.077 0.923 19 C -0.064 4.064 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.270 1.270 25 C 0.128 3.872 26 C -0.036 4.036 27 C -0.163 4.163 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.154 0.846 36 H 0.129 0.871 37 H 0.415 0.585 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.014 0.986 41 H 0.019 0.981 42 H 0.249 0.751 43 H 0.032 0.968 44 H 0.023 0.977 45 H 0.159 0.841 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.897 18.269 -0.970 31.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 C -0.237 4.237 4 O -0.229 6.229 5 C 0.108 3.892 6 C -0.236 4.236 7 C -0.049 4.049 8 C -0.193 4.193 9 C 0.347 3.653 10 O -0.469 6.469 11 N -0.349 5.349 12 C 0.040 3.960 13 H 0.092 0.908 14 C -0.166 4.166 15 C 0.059 3.941 16 N -0.353 5.353 17 C -0.376 4.376 18 H 0.095 0.905 19 C -0.257 4.257 20 N -0.597 5.597 21 Si 0.809 3.191 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.195 1.195 25 C 0.001 3.999 26 C -0.054 4.054 27 C -0.182 4.182 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.171 0.829 36 H 0.146 0.854 37 H 0.254 0.746 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.042 0.958 45 H 0.176 0.824 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -25.398 18.266 -1.447 31.318 hybrid contribution 0.930 -0.951 -0.357 1.377 sum -24.468 17.316 -1.804 30.030 Atomic orbital electron populations 1.21888 0.90989 1.03386 1.04111 1.22799 0.96587 0.93032 0.86656 1.22397 1.01786 0.95360 1.04163 1.86102 1.28634 1.67719 1.40480 1.19447 0.84545 0.91129 0.94038 1.21382 0.95325 1.06890 0.99979 1.21106 0.94708 0.91989 0.97063 1.19742 0.94445 1.06365 0.98750 1.18662 0.86763 0.77670 0.82163 1.90760 1.60230 1.62541 1.33326 1.45656 1.17158 1.51341 1.20790 1.21815 0.83632 0.92949 0.97624 0.90778 1.23006 0.99797 0.98973 0.94823 1.20952 0.94644 0.91505 0.87034 1.44706 1.30871 1.36627 1.23090 1.19415 1.07789 1.06782 1.03592 0.90549 1.25660 0.99264 1.02645 0.98144 1.70156 1.26434 1.44329 1.18744 0.85050 0.78334 0.78607 0.77151 1.21377 1.21543 1.19532 1.21950 0.89855 0.91856 0.96213 1.21348 0.92340 0.95663 0.96092 1.20624 0.97014 1.00817 0.99721 0.91479 0.88441 0.91897 0.90051 0.92516 0.88966 0.91554 0.82871 0.85353 0.74600 0.89115 0.88762 0.96788 0.96276 0.94181 0.94995 0.95811 0.82369 0.82501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.56 71.98 0.69 -0.35 16 2 C 0.06 0.67 2.84 30.59 0.09 0.75 16 3 C -0.18 -1.55 9.16 71.98 0.66 -0.89 16 4 O -0.32 -4.96 9.79 -90.40 -0.88 -5.85 16 5 C 0.16 2.69 6.61 22.63 0.15 2.84 16 6 C -0.22 -3.83 8.21 22.33 0.18 -3.65 16 7 C -0.03 -0.67 9.58 22.51 0.22 -0.45 16 8 C -0.19 -4.55 5.88 -20.08 -0.12 -4.67 16 9 C 0.56 17.42 7.76 86.71 0.67 18.10 16 10 O -0.59 -23.75 16.03 -3.97 -0.06 -23.82 16 11 N -0.70 -19.63 5.16 -439.05 -2.27 -21.89 16 12 C 0.15 5.35 3.37 46.38 0.16 5.51 16 13 H 0.07 3.09 7.63 -2.39 -0.02 3.07 16 14 C -0.13 -4.41 6.59 31.78 0.21 -4.20 16 15 C 0.18 9.07 5.37 86.73 0.47 9.54 16 16 N -0.63 -33.62 3.40 -691.72 -2.35 -35.97 16 17 C -0.25 -14.48 10.28 84.03 0.86 -13.62 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.06 -3.74 5.49 84.86 0.47 -3.27 16 20 N -0.95 -57.57 10.31 21.65 0.22 -57.35 16 21 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 C 0.13 5.70 6.94 86.84 0.60 6.30 16 26 C -0.04 -0.63 9.53 22.51 0.21 -0.41 16 27 C -0.16 -2.62 9.97 22.32 0.22 -2.40 16 28 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.08 0.76 6.30 -2.39 -0.02 0.74 16 32 H 0.06 0.60 6.90 -2.38 -0.02 0.59 16 33 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.15 2.00 5.40 -2.91 -0.02 1.98 16 36 H 0.13 3.11 7.64 -2.91 -0.02 3.08 16 37 H 0.42 8.35 6.56 -92.71 -0.61 7.74 16 38 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.09 2.68 8.00 -2.38 -0.02 2.66 16 40 H 0.01 0.77 7.38 -2.39 -0.02 0.76 16 41 H 0.02 1.03 7.50 -2.39 -0.02 1.01 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.16 1.86 6.40 -2.91 -0.02 1.84 16 46 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -76.12 371.75 2.80 -73.32 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.38 Total: 13.44 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.74 Total: 9.12 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -4.39 Total: -115.21 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.95 Total: -29.66 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -76.12 2.80 -73.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016179519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.941 kcal (2) G-P(sol) polarization free energy of solvation -76.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds