Wall clock time and date at job start Tue Mar 31 2020 14:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47094 * 2 1 4 4 O 1.42902 * 109.47085 * 119.99653 * 2 1 3 5 5 C 1.35708 * 116.99426 * 154.23845 * 4 2 1 6 6 C 1.38997 * 119.91818 * 5.45039 * 5 4 2 7 7 C 1.37699 * 120.08923 * 180.02562 * 6 5 4 8 8 C 1.39728 * 119.91370 * 359.97348 * 7 6 5 9 9 C 1.47606 * 120.08778 * 180.02562 * 8 7 6 10 10 O 1.21577 * 120.00223 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99777 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99734 * 179.97438 * 11 9 8 13 13 H 1.08994 * 110.64100 * 328.14549 * 12 11 9 14 14 C 1.55153 * 110.71922 * 205.00197 * 12 11 9 15 15 C 1.54905 * 101.58151 * 276.96518 * 14 12 11 16 16 N 1.47425 * 104.83261 * 322.98917 * 15 14 12 17 17 C 1.36942 * 125.64912 * 204.11147 * 16 15 14 18 18 H 1.07988 * 119.99823 * 162.22099 * 17 16 15 19 19 C 1.38817 * 119.99786 * 342.21515 * 17 16 15 20 20 N 1.31615 * 119.99879 * 350.95535 * 19 17 16 21 21 Si 1.86799 * 119.99515 * 170.95141 * 19 17 16 22 22 H 1.48505 * 109.46892 * 94.93776 * 21 19 17 23 23 H 1.48496 * 109.46932 * 214.93287 * 21 19 17 24 24 H 1.48494 * 109.47303 * 334.93640 * 21 19 17 25 25 C 1.47019 * 108.70131 * 24.13194 * 16 15 14 26 26 C 1.39737 * 119.82335 * 0.28062 * 8 7 6 27 27 C 1.37701 * 119.91051 * 359.44069 * 26 8 7 28 28 H 1.08999 * 109.47246 * 299.99838 * 1 2 3 29 29 H 1.09005 * 109.47219 * 60.00055 * 1 2 3 30 30 H 1.09001 * 109.46948 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47246 * 240.00162 * 2 1 3 32 32 H 1.08990 * 109.47071 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46947 * 300.00319 * 3 2 1 34 34 H 1.08999 * 109.46942 * 59.99975 * 3 2 1 35 35 H 1.08000 * 119.95124 * 359.97438 * 6 5 4 36 36 H 1.08004 * 120.04022 * 180.02562 * 7 6 5 37 37 H 0.97001 * 119.99941 * 0.02562 * 11 9 8 38 38 H 1.09005 * 111.00467 * 35.03795 * 14 12 11 39 39 H 1.09002 * 111.00388 * 158.88818 * 14 12 11 40 40 H 1.08997 * 110.36967 * 81.83258 * 15 14 12 41 41 H 1.09005 * 110.36282 * 204.15478 * 15 14 12 42 42 H 0.97007 * 119.99731 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.88017 * 239.52420 * 25 16 15 44 44 H 1.08996 * 109.88542 * 118.35807 * 25 16 15 45 45 H 1.08000 * 120.04191 * 179.71911 * 26 8 7 46 46 H 1.07994 * 119.95572 * 180.25613 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2384 -1.2376 1.0927 6 6 4.0207 -1.0477 -0.0404 7 6 5.2712 -1.6188 -0.1197 8 6 5.7537 -2.3897 0.9412 9 6 7.0938 -3.0032 0.8606 10 8 7.7796 -2.8377 -0.1296 11 7 7.5572 -3.7468 1.8847 12 6 8.8870 -4.3562 1.8045 13 1 9.1306 -4.6125 0.7735 14 6 8.9730 -5.6084 2.7165 15 6 9.2804 -4.9695 4.0938 16 7 10.1780 -3.8392 3.7936 17 6 11.0687 -3.2737 4.6665 18 1 11.8730 -2.6572 4.2934 19 6 10.9377 -3.4929 6.0310 20 7 9.8640 -4.0915 6.5012 21 14 12.2855 -2.9385 7.1995 22 1 11.9502 -1.5968 7.7408 23 1 12.4010 -3.9086 8.3178 24 1 13.5764 -2.8690 6.4690 25 6 9.9580 -3.4193 2.4019 26 6 4.9620 -2.5826 2.0764 27 6 3.7149 -2.0034 2.1503 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.6469 -0.4521 -0.8601 36 1 5.8786 -1.4704 -1.0003 37 1 7.0099 -3.8791 2.6746 38 1 8.0231 -6.1428 2.7370 39 1 9.7829 -6.2664 2.4015 40 1 8.3622 -4.6116 4.5594 41 1 9.7803 -5.6889 4.7425 42 1 9.7726 -4.2450 7.4547 43 1 10.8857 -3.5088 1.8366 44 1 9.6043 -2.3886 2.3771 45 1 5.3296 -3.1815 2.8965 46 1 3.1041 -2.1486 3.0291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016179521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:18 Heat of formation + Delta-G solvation = -47.246989 kcal Electronic energy + Delta-G solvation = -26209.732560 eV Core-core repulsion = 22485.338146 eV Total energy + Delta-G solvation = -3724.394414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.62238 -40.80879 -39.09254 -38.13061 -35.51505 -34.24905 -33.75082 -32.04846 -31.36277 -30.62783 -28.94824 -28.15090 -26.48598 -24.96018 -24.14443 -22.32528 -22.11046 -21.73782 -21.11955 -19.56020 -18.96952 -18.48420 -17.51411 -16.83279 -16.67338 -16.46510 -16.13592 -16.03484 -15.66761 -15.56772 -14.94725 -14.86319 -14.63374 -14.40580 -14.24467 -13.85975 -13.67331 -13.54206 -13.39691 -13.17176 -13.10162 -12.99656 -12.77381 -12.74319 -12.36761 -12.17501 -12.16490 -11.95668 -11.88161 -11.74492 -11.66489 -11.55862 -11.02069 -10.68916 -10.15121 -10.11974 -9.27937 -8.80578 -7.91328 -5.28217 -0.14626 0.28766 1.45830 1.46253 1.56501 1.81101 2.13054 2.17514 2.48611 2.81474 3.28996 3.63213 3.69493 3.74778 3.76088 3.86219 3.86967 3.98965 4.05917 4.13962 4.18367 4.29241 4.32895 4.48511 4.64477 4.69790 4.71366 4.80275 4.83343 4.88605 4.91980 4.95650 4.98522 5.03754 5.12077 5.19406 5.24808 5.30713 5.32232 5.40197 5.55020 5.58289 5.62140 5.70432 6.20442 6.36935 6.54369 7.07717 7.19104 7.73222 8.42172 9.20860 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.002586 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.806265 B =10822.846766 C =11498.700180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.064 3.936 3 C -0.180 4.180 4 O -0.317 6.317 5 C 0.157 3.843 6 C -0.215 4.215 7 C -0.025 4.025 8 C -0.191 4.191 9 C 0.560 3.440 10 O -0.582 6.582 11 N -0.702 5.702 12 C 0.145 3.855 13 H 0.102 0.898 14 C -0.133 4.133 15 C 0.178 3.822 16 N -0.619 5.619 17 C -0.251 4.251 18 H 0.068 0.932 19 C -0.054 4.054 20 N -0.939 5.939 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.272 1.272 25 C 0.124 3.876 26 C -0.041 4.041 27 C -0.167 4.167 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.159 0.841 36 H 0.136 0.864 37 H 0.407 0.593 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.014 0.986 41 H 0.027 0.973 42 H 0.250 0.750 43 H 0.032 0.968 44 H 0.006 0.994 45 H 0.144 0.856 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.621 4.897 -14.043 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 C -0.238 4.238 4 O -0.231 6.231 5 C 0.110 3.890 6 C -0.234 4.234 7 C -0.044 4.044 8 C -0.195 4.195 9 C 0.350 3.650 10 O -0.464 6.464 11 N -0.353 5.353 12 C 0.039 3.961 13 H 0.120 0.880 14 C -0.172 4.172 15 C 0.053 3.947 16 N -0.345 5.345 17 C -0.380 4.380 18 H 0.086 0.914 19 C -0.249 4.249 20 N -0.586 5.586 21 Si 0.803 3.197 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.197 1.197 25 C -0.003 4.003 26 C -0.060 4.060 27 C -0.185 4.185 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.176 0.824 36 H 0.154 0.846 37 H 0.244 0.756 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.032 0.968 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.024 0.976 45 H 0.162 0.838 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.239 5.013 -14.366 25.321 hybrid contribution 0.841 0.423 1.221 1.542 sum -19.398 5.436 -13.145 24.055 Atomic orbital electron populations 1.21894 0.90931 1.03434 1.04100 1.22837 0.96633 0.92966 0.86694 1.22400 1.01737 0.95474 1.04150 1.86107 1.29249 1.67224 1.40510 1.19384 0.84765 0.90907 0.93944 1.21407 0.95502 1.06707 0.99764 1.21122 0.94592 0.91624 0.97085 1.19799 0.94866 1.06403 0.98407 1.18530 0.86489 0.77716 0.82250 1.90709 1.60283 1.62351 1.33102 1.45841 1.18046 1.51429 1.19964 1.21768 0.81459 0.92795 1.00046 0.88017 1.23187 1.03371 0.95586 0.95011 1.21197 0.92370 0.88179 0.92923 1.44714 1.45021 1.36088 1.08712 1.19284 1.04435 1.26797 0.87524 0.91373 1.25689 0.99651 1.01486 0.98049 1.70094 1.27904 1.48140 1.12502 0.85134 0.78963 0.77208 0.78410 1.21376 1.21469 1.19682 1.21808 0.96317 0.95823 0.86309 1.21285 0.92619 0.96011 0.96055 1.20572 0.97091 1.01069 0.99766 0.91701 0.88233 0.91793 0.89626 0.92649 0.88682 0.91824 0.82382 0.84604 0.75562 0.88165 0.89295 0.96831 0.95477 0.94050 0.95016 0.97569 0.83790 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.56 71.98 0.69 -0.57 16 2 C 0.06 0.78 2.84 30.60 0.09 0.87 16 3 C -0.18 -1.96 9.19 71.98 0.66 -1.29 16 4 O -0.32 -5.94 9.79 -90.28 -0.88 -6.82 16 5 C 0.16 3.26 6.62 22.64 0.15 3.41 16 6 C -0.22 -4.26 8.25 22.32 0.18 -4.08 16 7 C -0.03 -0.62 9.58 22.50 0.22 -0.41 16 8 C -0.19 -5.33 5.87 -20.08 -0.12 -5.45 16 9 C 0.56 18.91 7.76 86.72 0.67 19.59 16 10 O -0.58 -23.13 15.98 -3.96 -0.06 -23.20 16 11 N -0.70 -23.00 5.05 -440.01 -2.22 -25.22 16 12 C 0.14 5.18 3.32 46.18 0.15 5.34 16 13 H 0.10 3.51 7.55 -2.39 -0.02 3.49 16 14 C -0.13 -4.52 6.67 31.98 0.21 -4.31 16 15 C 0.18 8.30 5.32 86.85 0.46 8.77 16 16 N -0.62 -32.21 3.39 -692.01 -2.34 -34.55 16 17 C -0.25 -14.41 10.20 84.03 0.86 -13.55 16 18 H 0.07 3.86 7.84 -2.92 -0.02 3.84 16 19 C -0.05 -3.08 5.38 84.86 0.46 -2.62 16 20 N -0.94 -55.31 11.01 21.65 0.24 -55.07 16 21 Si 0.97 45.88 29.56 68.60 2.03 47.91 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 25 C 0.12 5.54 6.99 86.73 0.61 6.15 16 26 C -0.04 -0.97 9.53 22.51 0.21 -0.76 16 27 C -0.17 -3.58 9.97 22.33 0.22 -3.36 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.88 6.24 -2.39 -0.01 0.87 16 32 H 0.05 0.73 6.99 -2.39 -0.02 0.71 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.16 2.25 5.44 -2.91 -0.02 2.23 16 36 H 0.14 3.34 7.64 -2.91 -0.02 3.32 16 37 H 0.41 12.11 6.66 -92.71 -0.62 11.49 16 38 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 39 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.01 0.68 7.90 -2.39 -0.02 0.66 16 41 H 0.03 1.41 7.47 -2.38 -0.02 1.39 16 42 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 43 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.01 0.31 8.05 -2.39 -0.02 0.29 16 45 H 0.14 3.07 6.39 -2.91 -0.02 3.05 16 46 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -71.68 372.84 2.85 -68.83 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.37 Total: 20.40 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 5.73 Total: 7.71 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -4.33 Total: -114.84 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.95 Total: -30.02 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -71.68 2.85 -68.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016179521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.582 kcal (2) G-P(sol) polarization free energy of solvation -71.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds