Wall clock time and date at job start Tue Mar 31 2020 14:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47049 * 2 1 4 4 O 1.21286 * 119.99592 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99954 * 180.27265 * 3 2 1 6 6 C 1.47016 * 125.65272 * 359.42005 * 5 3 2 7 7 C 1.54332 * 107.26850 * 178.84953 * 6 5 3 8 8 C 1.55160 * 103.01834 * 338.13874 * 7 6 5 9 9 H 1.09001 * 111.00331 * 277.23314 * 8 7 6 10 10 N 1.46903 * 111.00007 * 153.38205 * 8 7 6 11 11 C 1.46897 * 110.99769 * 92.80369 * 10 8 7 12 12 C 1.50705 * 109.47094 * 179.97438 * 11 10 8 13 13 C 1.38300 * 119.93187 * 269.73522 * 12 11 10 14 14 C 1.38107 * 120.06690 * 179.72485 * 13 12 11 15 15 C 1.38881 * 119.92594 * 0.54241 * 14 13 12 16 16 O 1.35758 * 120.06562 * 179.75040 * 15 14 13 17 17 C 1.34822 * 116.99653 * 174.44308 * 16 15 14 18 18 H 1.07995 * 120.00428 * 5.05143 * 17 16 15 19 19 C 1.38658 * 119.99379 * 185.05780 * 17 16 15 20 20 N 1.31556 * 120.00531 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47007 * 59.99592 * 21 19 17 23 23 H 1.48497 * 109.47049 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46781 * 299.99676 * 21 19 17 25 25 C 1.38874 * 119.86498 * 359.72586 * 15 14 13 26 26 C 1.38103 * 119.93337 * 0.02562 * 25 15 14 27 27 C 1.47431 * 125.64499 * 179.72850 * 5 3 2 28 28 H 1.09000 * 109.47547 * 60.00044 * 1 2 3 29 29 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47672 * 299.99410 * 1 2 3 31 31 H 1.08999 * 109.47672 * 240.00590 * 2 1 3 32 32 H 1.09000 * 109.47547 * 119.99956 * 2 1 3 33 33 H 1.09004 * 109.88453 * 298.39797 * 6 5 3 34 34 H 1.09000 * 109.87944 * 59.55371 * 6 5 3 35 35 H 1.09007 * 110.84695 * 219.67591 * 7 6 5 36 36 H 1.08997 * 110.66661 * 96.52539 * 7 6 5 37 37 H 1.00897 * 111.00232 * 328.84992 * 10 8 7 38 38 H 1.08989 * 109.47647 * 299.99691 * 11 10 8 39 39 H 1.09005 * 109.46971 * 60.00471 * 11 10 8 40 40 H 1.07996 * 119.96628 * 359.97438 * 13 12 11 41 41 H 1.07993 * 120.03297 * 180.26668 * 14 13 12 42 42 H 0.96998 * 120.00592 * 180.02562 * 20 19 17 43 43 H 1.07999 * 120.03222 * 179.97438 * 25 15 14 44 44 H 1.07998 * 119.96730 * 179.97438 * 26 25 15 45 45 H 1.09007 * 110.36404 * 322.92878 * 27 5 3 46 46 H 1.08997 * 110.36651 * 85.14229 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0056 6 6 4.4181 0.6493 0.0002 7 6 5.7688 1.3950 -0.0392 8 6 5.3869 2.7790 -0.6277 9 1 5.3346 2.7399 -1.7157 10 7 6.3272 3.8170 -0.1846 11 6 7.4178 3.9876 -1.1538 12 6 8.3597 5.0585 -0.6667 13 6 8.1505 6.3774 -1.0266 14 6 9.0087 7.3617 -0.5772 15 6 10.0890 7.0245 0.2277 16 8 10.9373 7.9892 0.6669 17 6 11.8960 7.6116 1.5363 18 1 12.0150 6.5685 1.7895 19 6 12.7292 8.5626 2.1055 20 7 12.5845 9.8333 1.7968 21 14 14.0572 8.0397 3.3107 22 1 14.9910 7.0992 2.6408 23 1 14.8063 9.2361 3.7717 24 1 13.4301 7.3678 4.4772 25 6 10.2996 5.6985 0.5827 26 6 9.4349 4.7194 0.1343 27 6 3.9831 3.0021 -0.0119 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.3505 0.0484 0.9071 34 1 4.3236 0.0105 -0.8780 35 1 6.4766 0.8814 -0.6898 36 1 6.1782 1.5026 0.9652 37 1 6.6890 3.6090 0.7340 38 1 7.9596 3.0479 -1.2603 39 1 7.0039 4.2799 -2.1189 40 1 7.3129 6.6383 -1.6564 41 1 8.8423 8.3919 -0.8551 42 1 13.1676 10.4985 2.1946 43 1 11.1391 5.4332 1.2082 44 1 9.5984 3.6880 0.4098 45 1 3.4035 3.6897 -0.6280 46 1 4.0694 3.3854 1.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018378523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:36 Heat of formation + Delta-G solvation = -39.381386 kcal Electronic energy + Delta-G solvation = -25285.053733 eV Core-core repulsion = 21561.000396 eV Total energy + Delta-G solvation = -3724.053336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.40654 -39.11885 -38.23072 -36.81756 -34.87298 -33.14852 -32.34137 -31.15204 -30.18800 -29.71171 -28.16375 -25.65614 -24.95630 -23.75827 -23.00775 -21.98514 -21.15434 -20.42545 -19.42874 -18.00109 -17.59319 -17.03123 -16.82119 -15.96180 -15.39140 -15.27565 -14.92102 -14.55751 -14.28820 -13.92443 -13.90215 -13.70036 -13.56707 -13.48535 -13.18152 -12.93040 -12.71212 -12.62259 -12.39541 -12.34256 -12.13312 -11.98101 -11.69710 -11.55653 -11.50886 -11.25764 -11.14900 -10.79594 -10.68549 -10.60999 -10.45058 -10.10417 -9.35938 -8.96983 -8.85551 -8.46365 -8.18896 -7.21094 -6.46622 -4.05746 2.20664 2.23770 2.35862 2.64718 3.11235 3.12369 3.15442 3.92812 3.95231 4.11327 4.29045 4.46640 4.55112 4.67331 4.68976 4.72551 4.90513 4.99964 5.07955 5.08960 5.21239 5.26831 5.28927 5.35625 5.41091 5.42255 5.52304 5.59167 5.66365 5.71484 5.75141 5.78662 5.84670 5.87542 5.97236 6.19695 6.40931 6.68745 6.86333 6.94103 7.03321 7.19882 7.23443 7.28255 7.39258 7.43003 7.81164 7.88372 7.97973 8.98647 9.68800 10.71183 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028777 B = 0.001903 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.748927 B =14712.100237 C =14943.814358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.539 6.539 5 N -0.622 5.622 6 C 0.105 3.895 7 C -0.165 4.165 8 C 0.078 3.922 9 H 0.092 0.908 10 N -0.673 5.673 11 C 0.121 3.879 12 C -0.188 4.188 13 C -0.051 4.051 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.177 6.177 17 C -0.393 4.393 18 H 0.091 0.909 19 C 0.040 3.960 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.235 4.235 26 C -0.065 4.065 27 C 0.115 3.885 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.347 0.653 38 H 0.030 0.970 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.271 0.729 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.145 -21.695 -4.087 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.314 3.686 4 O -0.416 6.416 5 N -0.358 5.358 6 C -0.019 4.019 7 C -0.204 4.204 8 C -0.034 4.034 9 H 0.110 0.890 10 N -0.304 5.304 11 C -0.007 4.007 12 C -0.190 4.190 13 C -0.070 4.070 14 C -0.214 4.214 15 C 0.102 3.898 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.255 4.255 26 C -0.084 4.084 27 C -0.008 4.008 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.166 0.834 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.884 -20.203 -4.331 26.062 hybrid contribution 1.421 -1.198 0.886 2.059 sum -14.463 -21.401 -3.445 26.059 Atomic orbital electron populations 1.21541 0.92928 1.01595 1.03469 1.21613 0.98588 0.93560 1.04159 1.20480 0.80288 0.91952 0.75877 1.90726 1.54261 1.46782 1.49818 1.48541 1.05131 1.08410 1.73695 1.21963 0.86865 0.91326 1.01737 1.23416 0.96307 0.98038 1.02686 1.22730 0.92455 0.88523 0.99706 0.89002 1.60417 1.18468 1.45318 1.06147 1.20643 0.89659 0.95592 0.94798 1.19076 0.98948 0.94154 1.06773 1.20477 0.97033 0.91754 0.97713 1.20239 0.96598 0.99575 1.04958 1.19413 0.89502 0.88531 0.92311 1.83982 1.37532 1.32370 1.54137 1.21271 1.09683 0.94623 1.21338 0.89136 1.25292 0.98527 0.94702 0.97971 1.70025 1.37705 1.00352 1.41547 0.85786 0.79693 0.78205 0.79767 1.19533 1.20254 1.19505 1.21111 1.03517 0.92816 1.08034 1.20573 0.94060 0.97637 0.96098 1.22175 0.92611 0.84141 1.01914 0.91937 0.92040 0.91922 0.89051 0.89061 0.91290 0.91291 0.89853 0.90110 0.83385 0.95221 0.91025 0.87009 0.86540 0.91935 0.85661 0.87958 0.89975 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.15 0.34 -0.59 16 2 C -0.14 -0.89 5.61 -27.88 -0.16 -1.05 16 3 C 0.52 5.49 7.85 -10.98 -0.09 5.40 16 4 O -0.54 -7.92 16.24 5.55 0.09 -7.83 16 5 N -0.62 -5.66 3.33 -170.51 -0.57 -6.23 16 6 C 0.10 0.62 6.49 -3.06 -0.02 0.60 16 7 C -0.16 -1.06 6.55 -24.89 -0.16 -1.22 16 8 C 0.08 0.68 3.38 -65.56 -0.22 0.45 16 9 H 0.09 0.80 7.83 -51.93 -0.41 0.39 16 10 N -0.67 -7.38 6.40 -105.72 -0.68 -8.06 16 11 C 0.12 1.45 5.67 -4.98 -0.03 1.42 16 12 C -0.19 -3.00 5.40 -104.57 -0.56 -3.57 16 13 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 14 C -0.19 -4.08 9.99 -39.39 -0.39 -4.47 16 15 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 16 O -0.18 -5.03 9.76 0.05 0.00 -5.03 16 17 C -0.39 -10.89 9.49 30.89 0.29 -10.59 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 21 Si 0.94 20.31 29.55 -169.99 -5.02 15.28 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C -0.24 -4.97 9.17 -39.40 -0.36 -5.33 16 26 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 27 C 0.11 1.17 6.60 -2.53 -0.02 1.15 16 28 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.53 7.75 -51.93 -0.40 0.12 16 37 H 0.35 3.78 8.18 -39.29 -0.32 3.46 16 38 H 0.03 0.32 8.08 -51.94 -0.42 -0.10 16 39 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 44 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -32.56 381.62 -9.32 -41.88 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.16 Total: 4.73 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.50 Total: -16.11 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.49 Total: -38.68 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.56 -9.32 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018378523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.503 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds