Wall clock time and date at job start Tue Mar 31 2020 14:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47049 * 2 1 4 4 O 1.21286 * 119.99592 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99954 * 180.27265 * 3 2 1 6 6 C 1.47016 * 125.65272 * 359.42005 * 5 3 2 7 7 C 1.54332 * 107.26850 * 178.84953 * 6 5 3 8 8 C 1.55160 * 103.01834 * 338.13874 * 7 6 5 9 9 H 1.09001 * 111.00331 * 277.23314 * 8 7 6 10 10 N 1.46903 * 111.00007 * 153.38205 * 8 7 6 11 11 C 1.46897 * 110.99769 * 92.80369 * 10 8 7 12 12 C 1.50705 * 109.47094 * 179.97438 * 11 10 8 13 13 C 1.38300 * 119.93187 * 269.73522 * 12 11 10 14 14 C 1.38107 * 120.06690 * 179.72485 * 13 12 11 15 15 C 1.38881 * 119.92594 * 0.54241 * 14 13 12 16 16 O 1.35758 * 120.06562 * 179.75040 * 15 14 13 17 17 C 1.34822 * 116.99653 * 174.44308 * 16 15 14 18 18 H 1.07995 * 120.00428 * 5.05143 * 17 16 15 19 19 C 1.38658 * 119.99379 * 185.05780 * 17 16 15 20 20 N 1.31556 * 120.00531 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47007 * 59.99592 * 21 19 17 23 23 H 1.48497 * 109.47049 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46781 * 299.99676 * 21 19 17 25 25 C 1.38874 * 119.86498 * 359.72586 * 15 14 13 26 26 C 1.38103 * 119.93337 * 0.02562 * 25 15 14 27 27 C 1.47431 * 125.64499 * 179.72850 * 5 3 2 28 28 H 1.09000 * 109.47547 * 60.00044 * 1 2 3 29 29 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47672 * 299.99410 * 1 2 3 31 31 H 1.08999 * 109.47672 * 240.00590 * 2 1 3 32 32 H 1.09000 * 109.47547 * 119.99956 * 2 1 3 33 33 H 1.09004 * 109.88453 * 298.39797 * 6 5 3 34 34 H 1.09000 * 109.87944 * 59.55371 * 6 5 3 35 35 H 1.09007 * 110.84695 * 219.67591 * 7 6 5 36 36 H 1.08997 * 110.66661 * 96.52539 * 7 6 5 37 37 H 1.00897 * 111.00232 * 328.84992 * 10 8 7 38 38 H 1.08989 * 109.47647 * 299.99691 * 11 10 8 39 39 H 1.09005 * 109.46971 * 60.00471 * 11 10 8 40 40 H 1.07996 * 119.96628 * 359.97438 * 13 12 11 41 41 H 1.07993 * 120.03297 * 180.26668 * 14 13 12 42 42 H 0.96998 * 120.00592 * 180.02562 * 20 19 17 43 43 H 1.07999 * 120.03222 * 179.97438 * 25 15 14 44 44 H 1.07998 * 119.96730 * 179.97438 * 26 25 15 45 45 H 1.09007 * 110.36404 * 322.92878 * 27 5 3 46 46 H 1.08997 * 110.36651 * 85.14229 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0056 6 6 4.4181 0.6493 0.0002 7 6 5.7688 1.3950 -0.0392 8 6 5.3869 2.7790 -0.6277 9 1 5.3346 2.7399 -1.7157 10 7 6.3272 3.8170 -0.1846 11 6 7.4178 3.9876 -1.1538 12 6 8.3597 5.0585 -0.6667 13 6 8.1505 6.3774 -1.0266 14 6 9.0087 7.3617 -0.5772 15 6 10.0890 7.0245 0.2277 16 8 10.9373 7.9892 0.6669 17 6 11.8960 7.6116 1.5363 18 1 12.0150 6.5685 1.7895 19 6 12.7292 8.5626 2.1055 20 7 12.5845 9.8333 1.7968 21 14 14.0572 8.0397 3.3107 22 1 14.9910 7.0992 2.6408 23 1 14.8063 9.2361 3.7717 24 1 13.4301 7.3678 4.4772 25 6 10.2996 5.6985 0.5827 26 6 9.4349 4.7194 0.1343 27 6 3.9831 3.0021 -0.0119 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.3505 0.0484 0.9071 34 1 4.3236 0.0105 -0.8780 35 1 6.4766 0.8814 -0.6898 36 1 6.1782 1.5026 0.9652 37 1 6.6890 3.6090 0.7340 38 1 7.9596 3.0479 -1.2603 39 1 7.0039 4.2799 -2.1189 40 1 7.3129 6.6383 -1.6564 41 1 8.8423 8.3919 -0.8551 42 1 13.1676 10.4985 2.1946 43 1 11.1391 5.4332 1.2082 44 1 9.5984 3.6880 0.4098 45 1 3.4035 3.6897 -0.6280 46 1 4.0694 3.3854 1.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018378523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:36 Heat of formation + Delta-G solvation = -61.491577 kcal Electronic energy + Delta-G solvation = -25286.012502 eV Core-core repulsion = 21561.000396 eV Total energy + Delta-G solvation = -3725.012106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14686 -40.75119 -39.15462 -38.30720 -35.89475 -34.28547 -33.73812 -32.14217 -31.74309 -30.58423 -29.19429 -27.45229 -25.89694 -24.79042 -23.61166 -23.54236 -22.01867 -21.75977 -20.09416 -19.82258 -18.85144 -18.26088 -17.51428 -16.88956 -16.43242 -16.38830 -16.19190 -16.00199 -15.51959 -15.43282 -15.17247 -14.78691 -14.53023 -14.32697 -14.28416 -13.97607 -13.85629 -13.77861 -13.53878 -13.13737 -13.11202 -12.94333 -12.77069 -12.57654 -12.46971 -12.31333 -12.24664 -12.14568 -12.06606 -11.93094 -11.68373 -11.15543 -10.92458 -10.77720 -9.75030 -9.69384 -9.29357 -8.88328 -8.45912 -6.14369 0.63422 0.69655 1.35215 1.46112 1.51833 1.61052 1.96311 2.18580 2.80287 3.10783 3.36259 3.51900 3.55076 3.70211 3.88020 4.02795 4.10368 4.12748 4.20257 4.23697 4.25511 4.32176 4.39797 4.53370 4.61232 4.64537 4.74633 4.78081 4.83943 4.84291 4.90769 4.96572 5.03846 5.06567 5.12010 5.13931 5.17121 5.25803 5.34169 5.36746 5.60024 5.73829 5.83716 6.04119 6.10261 6.27950 6.47042 6.51836 6.98545 7.14195 7.80498 8.77193 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028777 B = 0.001903 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.748927 B =14712.100237 C =14943.814358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.513 3.487 4 O -0.596 6.596 5 N -0.622 5.622 6 C 0.101 3.899 7 C -0.156 4.156 8 C 0.086 3.914 9 H 0.098 0.902 10 N -0.686 5.686 11 C 0.127 3.873 12 C -0.158 4.158 13 C -0.050 4.050 14 C -0.210 4.210 15 C 0.112 3.888 16 O -0.235 6.235 17 C -0.414 4.414 18 H 0.103 0.897 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.244 4.244 26 C -0.058 4.058 27 C 0.112 3.888 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.348 0.652 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.107 0.893 42 H 0.272 0.728 43 H 0.119 0.881 44 H 0.145 0.855 45 H 0.056 0.944 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.515 -26.780 -4.441 31.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.304 3.696 4 O -0.477 6.477 5 N -0.355 5.355 6 C -0.021 4.021 7 C -0.195 4.195 8 C -0.025 4.025 9 H 0.116 0.884 10 N -0.318 5.318 11 C -0.001 4.001 12 C -0.159 4.159 13 C -0.068 4.068 14 C -0.229 4.229 15 C 0.062 3.938 16 O -0.142 6.142 17 C -0.490 4.490 18 H 0.120 0.880 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.180 1.180 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.263 4.263 26 C -0.077 4.077 27 C -0.012 4.012 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.168 0.832 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.158 0.842 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.136 0.864 44 H 0.162 0.838 45 H 0.074 0.926 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.271 -25.367 -4.713 30.503 hybrid contribution 1.220 0.181 0.822 1.482 sum -15.051 -25.186 -3.891 29.597 Atomic orbital electron populations 1.21552 0.93651 1.02703 1.01711 1.21669 0.97890 0.90897 1.06498 1.21341 0.80270 0.93172 0.74797 1.90698 1.55760 1.48731 1.52510 1.48653 1.05549 1.08707 1.72633 1.22229 0.85314 0.90718 1.03837 1.23379 0.96929 0.96217 1.02997 1.22615 0.90632 0.89375 0.99913 0.88373 1.60256 1.18321 1.47122 1.06073 1.20626 0.89322 0.95061 0.95099 1.19637 0.98265 0.94598 1.03428 1.20862 0.96754 0.91846 0.97347 1.20466 0.96878 1.00386 1.05184 1.19968 0.90415 0.89419 0.93979 1.83945 1.39437 1.34554 1.56290 1.21793 1.10035 0.95484 1.21646 0.87963 1.26619 1.01102 0.94551 0.99948 1.70185 1.39819 1.01892 1.44131 0.84642 0.76293 0.78099 0.77136 1.18010 1.19792 1.18145 1.21253 1.04295 0.92541 1.08233 1.20982 0.92966 0.98702 0.95011 1.22062 0.93629 0.84760 1.00728 0.93680 0.89352 0.93821 0.86368 0.86608 0.89444 0.88912 0.87809 0.89963 0.83210 0.92471 0.89919 0.84163 0.87477 0.91909 0.86363 0.83773 0.92589 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.20 71.98 0.66 -1.02 16 2 C -0.13 -1.28 5.61 29.85 0.17 -1.11 16 3 C 0.51 10.06 7.85 87.66 0.69 10.75 16 4 O -0.60 -17.97 16.24 -3.05 -0.05 -18.01 16 5 N -0.62 -9.87 3.33 -811.76 -2.70 -12.57 16 6 C 0.10 0.73 6.49 86.73 0.56 1.29 16 7 C -0.16 -1.22 6.55 31.79 0.21 -1.02 16 8 C 0.09 1.19 3.38 46.31 0.16 1.34 16 9 H 0.10 1.29 7.83 -2.39 -0.02 1.27 16 10 N -0.69 -12.48 6.40 -488.40 -3.13 -15.60 16 11 C 0.13 2.40 5.67 85.56 0.49 2.89 16 12 C -0.16 -4.50 5.40 -19.83 -0.11 -4.61 16 13 C -0.05 -1.65 9.69 22.25 0.22 -1.44 16 14 C -0.21 -9.05 9.99 22.39 0.22 -8.83 16 15 C 0.11 5.60 6.65 22.58 0.15 5.75 16 16 O -0.24 -14.32 9.76 -22.75 -0.22 -14.54 16 17 C -0.41 -24.11 9.49 67.92 0.64 -23.46 16 18 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 19 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 20 N -0.92 -57.07 13.67 21.61 0.30 -56.77 16 21 Si 1.02 42.68 29.55 68.60 2.03 44.71 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 C -0.24 -10.27 9.17 22.39 0.21 -10.06 16 26 C -0.06 -1.82 9.69 22.25 0.22 -1.60 16 27 C 0.11 2.15 6.60 86.85 0.57 2.72 16 28 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 31 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.09 0.30 8.14 -2.39 -0.02 0.29 16 35 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.08 0.67 7.75 -2.39 -0.02 0.66 16 37 H 0.35 6.24 8.18 -89.70 -0.73 5.51 16 38 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 39 H 0.08 1.48 8.03 -2.38 -0.02 1.46 16 40 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 41 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.12 5.06 5.64 -2.91 -0.02 5.04 16 44 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 45 H 0.06 1.35 8.04 -2.38 -0.02 1.33 16 46 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -79.74 381.62 1.99 -77.75 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.24 Total: 24.38 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 5.52 Total: -29.34 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -5.53 Total: -84.94 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.27 Total: -32.56 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -79.74 1.99 -77.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018378523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.258 kcal (2) G-P(sol) polarization free energy of solvation -79.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds