Wall clock time and date at job start Tue Mar 31 2020 14:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46899 * 2 1 4 4 O 1.42900 * 109.46835 * 119.99704 * 2 1 3 5 5 C 1.35716 * 116.99415 * 155.89094 * 4 2 1 6 6 C 1.38996 * 119.91614 * 4.58822 * 5 4 2 7 7 C 1.37700 * 120.08671 * 180.02562 * 6 5 4 8 8 C 1.39731 * 119.91266 * 359.97256 * 7 6 5 9 9 C 1.47604 * 120.08587 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00128 * 8.39469 * 9 8 7 11 11 N 1.34777 * 120.00312 * 188.39397 * 9 8 7 12 12 C 1.47030 * 125.64582 * 354.65956 * 11 9 8 13 13 C 1.54323 * 107.27065 * 178.97889 * 12 11 9 14 14 C 1.55158 * 102.94312 * 337.80757 * 13 12 11 15 15 H 1.09002 * 111.00195 * 277.43041 * 14 13 12 16 16 N 1.46495 * 111.03811 * 153.59332 * 14 13 12 17 17 C 1.36932 * 120.00067 * 161.32711 * 16 14 13 18 18 H 1.08000 * 120.00235 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00183 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99779 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00270 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46921 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47103 * 120.00391 * 21 19 17 24 24 H 1.48502 * 109.46978 * 240.00469 * 21 19 17 25 25 C 1.47427 * 125.65179 * 174.70465 * 11 9 8 26 26 C 1.39727 * 119.82565 * 0.28373 * 8 7 6 27 27 C 1.37704 * 119.91110 * 359.43844 * 26 8 7 28 28 H 1.08994 * 109.47214 * 300.00168 * 1 2 3 29 29 H 1.08999 * 109.47134 * 60.00184 * 1 2 3 30 30 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 239.99832 * 2 1 3 32 32 H 1.08994 * 109.47325 * 59.99900 * 3 2 1 33 33 H 1.09003 * 109.46674 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47077 * 299.99851 * 3 2 1 35 35 H 1.07994 * 119.95347 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.04262 * 179.97438 * 7 6 5 37 37 H 1.09006 * 109.88085 * 298.39347 * 12 11 9 38 38 H 1.08995 * 109.88099 * 59.55676 * 12 11 9 39 39 H 1.09001 * 110.72122 * 96.16995 * 13 12 11 40 40 H 1.09002 * 110.71584 * 219.44555 * 13 12 11 41 41 H 0.96996 * 119.99610 * 341.33217 * 16 14 13 42 42 H 0.97004 * 119.99888 * 179.97438 * 20 19 17 43 43 H 1.08994 * 110.36178 * 322.92472 * 25 11 9 44 44 H 1.08996 * 110.36897 * 85.14693 * 25 11 9 45 45 H 1.08004 * 120.04294 * 179.71659 * 26 8 7 46 46 H 1.07996 * 119.95705 * 180.29720 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2523 -1.2078 1.1043 6 6 4.0383 -1.0035 -0.0238 7 6 5.3028 -1.5444 -0.0912 8 6 5.7958 -2.2990 0.9765 9 6 7.1509 -2.8801 0.9085 10 8 7.8963 -2.5793 -0.0038 11 7 7.5622 -3.7440 1.8577 12 6 6.8114 -4.1080 3.0683 13 6 7.6588 -5.1419 3.8394 14 6 8.5814 -5.7264 2.7374 15 1 8.0700 -6.5060 2.1727 16 7 9.8311 -6.2316 3.3111 17 6 10.6026 -7.1133 2.6024 18 1 10.2901 -7.4361 1.6202 19 6 11.7871 -7.5916 3.1457 20 7 12.1682 -7.1979 4.3424 21 14 12.8400 -8.7939 2.1786 22 1 12.1954 -9.0753 0.8707 23 1 14.1834 -8.2035 1.9512 24 1 12.9782 -10.0583 2.9451 25 6 8.8396 -4.4799 1.8545 26 6 5.0005 -2.5066 2.1065 27 6 3.7391 -1.9576 2.1687 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 3.6567 -0.4198 -0.8483 36 1 5.9128 -1.3855 -0.9682 37 1 6.6528 -3.2240 3.6860 38 1 5.8526 -4.5466 2.7920 39 1 8.2475 -4.6551 4.6170 40 1 7.0248 -5.9201 4.2644 41 1 10.1119 -5.9415 4.1930 42 1 12.9957 -7.5324 4.7223 43 1 9.1013 -4.7811 0.8402 44 1 9.6318 -3.8666 2.2838 45 1 5.3762 -3.0931 2.9318 46 1 3.1257 -2.1136 3.0437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019734603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:04 Heat of formation + Delta-G solvation = -32.019006 kcal Electronic energy + Delta-G solvation = -26033.602455 eV Core-core repulsion = 22309.868375 eV Total energy + Delta-G solvation = -3723.734079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77171 -40.88017 -38.89212 -38.20165 -36.03624 -34.24002 -33.51922 -32.12504 -31.39187 -30.97925 -28.99152 -28.12482 -26.23853 -25.17224 -24.03800 -23.52908 -21.82275 -21.67598 -20.92799 -19.40320 -19.12532 -18.37403 -17.50337 -17.11294 -16.69147 -16.49538 -16.27987 -15.79328 -15.51632 -15.25276 -14.99520 -14.93640 -14.73002 -14.46416 -14.29274 -13.99713 -13.84450 -13.63661 -13.49881 -13.16191 -13.09827 -13.02718 -12.90527 -12.76170 -12.50121 -12.33597 -12.06468 -11.98814 -11.79891 -11.68095 -11.61696 -11.37287 -11.11546 -10.96612 -10.11547 -9.76879 -9.25692 -9.08157 -7.98494 -5.28165 -0.13445 0.30552 1.46438 1.47977 1.57297 1.77149 1.91042 2.15490 2.54444 2.79543 3.31988 3.48595 3.57623 3.70815 3.78569 3.87337 3.94911 3.99034 4.07506 4.16702 4.20140 4.22973 4.31454 4.37046 4.45809 4.56101 4.62395 4.69983 4.80279 4.82094 4.84768 4.89029 4.96481 4.98797 5.08810 5.17266 5.20435 5.21688 5.25014 5.31571 5.34537 5.39402 5.52094 5.62931 6.23800 6.37778 6.49912 7.06267 7.31208 8.02591 8.26878 9.24280 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036689 B = 0.002204 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.985106 B =12701.939543 C =13093.727522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.064 3.936 3 C -0.180 4.180 4 O -0.315 6.315 5 C 0.154 3.846 6 C -0.217 4.217 7 C -0.032 4.032 8 C -0.188 4.188 9 C 0.564 3.436 10 O -0.596 6.596 11 N -0.608 5.608 12 C 0.092 3.908 13 C -0.130 4.130 14 C 0.165 3.835 15 H 0.064 0.936 16 N -0.722 5.722 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.069 4.069 20 N -0.964 5.964 21 Si 0.970 3.030 22 H -0.269 1.269 23 H -0.296 1.296 24 H -0.289 1.289 25 C 0.093 3.907 26 C -0.074 4.074 27 C -0.162 4.162 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.379 0.621 42 H 0.252 0.748 43 H 0.043 0.957 44 H 0.046 0.954 45 H 0.187 0.813 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.841 15.540 -4.873 32.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 C -0.238 4.238 4 O -0.228 6.228 5 C 0.108 3.892 6 C -0.235 4.235 7 C -0.051 4.051 8 C -0.191 4.191 9 C 0.356 3.644 10 O -0.479 6.479 11 N -0.340 5.340 12 C -0.029 4.029 13 C -0.168 4.168 14 C 0.055 3.945 15 H 0.082 0.918 16 N -0.362 5.362 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.262 4.262 20 N -0.614 5.614 21 Si 0.799 3.201 22 H -0.194 1.194 23 H -0.223 1.223 24 H -0.216 1.216 25 C -0.033 4.033 26 C -0.091 4.091 27 C -0.180 4.180 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.172 0.828 36 H 0.144 0.856 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.212 0.788 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.203 0.797 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -27.573 15.608 -5.364 32.135 hybrid contribution 1.643 -0.389 -0.578 1.784 sum -25.930 15.219 -5.941 30.648 Atomic orbital electron populations 1.21881 0.90873 1.03434 1.04114 1.22797 0.96654 0.92954 0.86682 1.22404 1.01712 0.95472 1.04179 1.86107 1.27952 1.68123 1.40653 1.19499 0.84441 0.91240 0.94061 1.21361 0.95167 1.06999 1.00018 1.21076 0.94773 0.92144 0.97081 1.19674 0.93963 1.06550 0.98931 1.18482 0.87376 0.77989 0.80525 1.90727 1.57657 1.62700 1.36865 1.48417 1.20276 1.42465 1.22875 1.22822 0.95977 0.99094 0.84990 1.22932 0.98038 0.98609 0.97260 1.21478 0.87249 0.91978 0.93825 0.91808 1.42422 1.22404 1.52045 1.19286 1.19621 1.01291 1.17468 0.99394 0.90853 1.25521 0.99795 1.02949 0.97959 1.69799 1.24725 1.49308 1.17553 0.85134 0.78391 0.78420 0.78174 1.19350 1.22290 1.21610 1.23018 0.85226 0.94510 1.00585 1.22773 0.92505 0.96096 0.97774 1.20722 0.96822 1.00962 0.99538 0.91478 0.88436 0.91812 0.90079 0.91547 0.92663 0.88935 0.82836 0.85589 0.87732 0.87465 0.90401 0.87386 0.78792 0.93872 0.93816 0.93512 0.79715 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.56 71.98 0.69 -0.36 16 2 C 0.06 0.69 2.85 30.59 0.09 0.78 16 3 C -0.18 -1.66 9.15 71.98 0.66 -1.00 16 4 O -0.31 -5.08 9.79 -90.38 -0.89 -5.97 16 5 C 0.15 2.80 6.60 22.63 0.15 2.95 16 6 C -0.22 -4.05 8.19 22.32 0.18 -3.87 16 7 C -0.03 -0.77 9.58 22.50 0.22 -0.55 16 8 C -0.19 -4.96 5.87 -20.08 -0.12 -5.08 16 9 C 0.56 19.49 7.80 86.72 0.68 20.17 16 10 O -0.60 -25.82 16.67 -4.00 -0.07 -25.88 16 11 N -0.61 -19.46 3.33 -827.92 -2.75 -22.22 16 12 C 0.09 2.00 4.87 86.73 0.42 2.43 16 13 C -0.13 -3.42 6.58 31.78 0.21 -3.21 16 14 C 0.17 6.24 3.68 46.39 0.17 6.41 16 15 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 16 N -0.72 -35.15 5.28 -316.38 -1.67 -36.82 16 17 C -0.25 -13.50 9.98 84.03 0.84 -12.66 16 18 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 20 N -0.96 -57.97 13.06 21.65 0.28 -57.69 16 21 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 C 0.09 3.65 6.58 86.86 0.57 4.22 16 26 C -0.07 -1.43 8.58 22.50 0.19 -1.24 16 27 C -0.16 -2.76 9.97 22.33 0.22 -2.53 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.08 0.78 6.31 -2.39 -0.02 0.77 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.63 6.86 -2.39 -0.02 0.62 16 34 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.15 2.12 5.40 -2.91 -0.02 2.11 16 36 H 0.13 3.25 7.67 -2.91 -0.02 3.22 16 37 H 0.11 1.73 6.79 -2.38 -0.02 1.71 16 38 H 0.11 1.75 6.67 -2.39 -0.02 1.73 16 39 H 0.08 2.12 8.00 -2.39 -0.02 2.10 16 40 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.38 19.48 7.71 -92.71 -0.72 18.77 16 42 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.04 1.92 8.09 -2.39 -0.02 1.90 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.19 2.75 2.77 -7.71 -0.02 2.73 16 46 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -73.62 369.94 2.84 -70.78 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.27 Total: 26.59 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.64 Total: 2.96 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -4.14 Total: -116.72 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.95 Total: -31.85 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -73.62 2.84 -70.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019734603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.757 kcal (2) G-P(sol) polarization free energy of solvation -73.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds