Wall clock time and date at job start Tue Mar 31 2020 14:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46991 * 2 1 4 4 O 1.42901 * 109.47213 * 120.00458 * 2 1 3 5 5 C 1.35898 * 117.00028 * 85.53803 * 4 2 1 6 6 C 1.38755 * 120.05622 * 354.27447 * 5 4 2 7 7 C 1.38122 * 119.93934 * 180.31890 * 6 5 4 8 8 C 1.38289 * 120.05944 * 359.67919 * 7 6 5 9 9 C 1.38246 * 120.10941 * 0.02675 * 8 7 6 10 10 C 1.38162 * 120.05533 * 0.02562 * 9 8 7 11 11 C 1.50704 * 120.02829 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47154 * 265.00236 * 11 10 9 13 13 O 1.21274 * 119.99964 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99726 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99916 * 180.02562 * 14 12 11 16 16 C 1.53493 * 114.20935 * 154.99772 * 15 14 12 17 17 N 1.47069 * 87.98580 * 87.71567 * 16 15 14 18 18 C 1.36937 * 136.05607 * 207.09034 * 17 16 15 19 19 H 1.07994 * 119.99816 * 355.66906 * 18 17 16 20 20 C 1.38808 * 120.00045 * 175.67817 * 18 17 16 21 21 N 1.31617 * 120.00118 * 177.85679 * 20 18 17 22 22 Si 1.86805 * 119.99836 * 357.84648 * 20 18 17 23 23 H 1.48500 * 109.47133 * 174.55375 * 22 20 18 24 24 H 1.48502 * 109.47479 * 294.55726 * 22 20 18 25 25 H 1.48501 * 109.46777 * 54.56015 * 22 20 18 26 26 C 1.47065 * 87.88381 * 27.34087 * 17 16 15 27 27 H 1.08997 * 109.46648 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46887 * 299.99570 * 1 2 3 29 29 H 1.08994 * 109.47480 * 59.99905 * 1 2 3 30 30 H 1.09003 * 109.46887 * 240.00430 * 2 1 3 31 31 H 1.08998 * 109.46707 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47086 * 300.00336 * 3 2 1 33 33 H 1.09003 * 109.46954 * 60.00471 * 3 2 1 34 34 H 1.07999 * 120.02785 * 0.02562 * 6 5 4 35 35 H 1.08003 * 119.97350 * 179.70605 * 7 6 5 36 36 H 1.08000 * 119.94693 * 180.02562 * 8 7 6 37 37 H 1.08003 * 119.97020 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47310 * 144.99974 * 11 10 9 39 39 H 1.09007 * 109.46743 * 25.00251 * 11 10 9 40 40 H 0.96998 * 120.00710 * 359.97438 * 14 12 11 41 41 H 1.09002 * 113.28269 * 21.92675 * 15 14 12 42 42 H 1.09000 * 113.46512 * 332.93154 * 16 15 14 43 43 H 1.09000 * 113.52167 * 202.50384 * 16 15 14 44 44 H 0.96997 * 119.99879 * 5.08609 * 21 20 18 45 45 H 1.08999 * 113.46533 * 87.43810 * 26 17 16 46 46 H 1.09000 * 113.46666 * 217.87506 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1233 -2.0257 1.0940 6 6 1.6757 -2.7024 -0.0317 7 6 1.7896 -4.0772 -0.1003 8 6 2.3552 -4.7786 0.9488 9 6 2.8074 -4.1061 2.0688 10 6 2.6948 -2.7311 2.1428 11 6 3.1874 -1.9986 3.3642 12 6 2.0404 -1.7837 4.3177 13 8 0.9320 -2.1852 4.0332 14 7 2.2463 -1.1443 5.4862 15 6 1.1313 -0.9357 6.4134 16 6 1.5543 -0.7722 7.8798 17 7 1.7066 0.6676 7.6212 18 6 2.4582 1.6883 8.1393 19 1 3.0954 1.5102 8.9928 20 6 2.4008 2.9518 7.5676 21 7 3.0906 3.9430 8.0911 22 14 1.3448 3.2454 6.0549 23 1 1.3501 4.6923 5.7207 24 1 1.8915 2.4713 4.9116 25 1 -0.0468 2.8062 6.3299 26 6 0.6919 0.5298 6.5657 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.2343 -2.1550 -0.8514 35 1 1.4371 -4.6049 -0.9742 36 1 2.4438 -5.8535 0.8930 37 1 3.2492 -4.6561 2.8866 38 1 3.5993 -1.0339 3.0680 39 1 3.9616 -2.5892 3.8543 40 1 3.1327 -0.8228 5.7136 41 1 0.3079 -1.6335 6.2609 42 1 2.4930 -1.2720 8.1191 43 1 0.7606 -1.0041 8.5900 44 1 3.6957 3.7754 8.8304 45 1 -0.3298 0.6411 6.9286 46 1 0.8958 1.1394 5.6854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031098656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:25 Heat of formation + Delta-G solvation = 12.406781 kcal Electronic energy + Delta-G solvation = -27232.926565 eV Core-core repulsion = 23511.118932 eV Total energy + Delta-G solvation = -3721.807633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60361 -39.55866 -38.10159 -37.49919 -33.56629 -33.34243 -32.54111 -32.00398 -30.02584 -28.25365 -27.42924 -27.03206 -25.37182 -23.51331 -22.87716 -21.76167 -20.87309 -20.20443 -19.45294 -18.21556 -17.49110 -16.85886 -16.26772 -16.12181 -15.62163 -15.48189 -14.96531 -14.74485 -14.63156 -13.99695 -13.95001 -13.72062 -13.47258 -13.20143 -13.13468 -12.87520 -12.75783 -12.46053 -12.31622 -12.23458 -11.94983 -11.83349 -11.44717 -11.31225 -11.24877 -11.00221 -10.86516 -10.69513 -10.61495 -10.29786 -9.62214 -9.39214 -9.06000 -9.00201 -8.88465 -8.41525 -8.15021 -7.18013 -6.31727 -3.24925 1.23969 1.41743 2.97051 3.12617 3.42892 3.44866 3.47001 3.66859 3.84209 4.55399 4.58801 4.64857 4.69280 4.74977 4.76472 4.87446 4.95606 5.09381 5.15651 5.20981 5.27135 5.38027 5.42154 5.43046 5.48627 5.55604 5.59344 5.61810 5.73297 5.89712 5.95294 5.98152 5.99867 6.03623 6.21222 6.26391 6.28452 6.33658 6.36415 6.45944 6.48423 6.74444 7.05980 7.08033 7.41334 7.94741 8.21890 8.60261 8.96328 9.48886 10.34428 11.20277 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.004140 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.346725 B = 6762.040727 C = 8074.379409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.078 3.922 3 C -0.151 4.151 4 O -0.303 6.303 5 C 0.151 3.849 6 C -0.213 4.213 7 C -0.083 4.083 8 C -0.161 4.161 9 C -0.070 4.070 10 C -0.094 4.094 11 C -0.096 4.096 12 C 0.520 3.480 13 O -0.541 6.541 14 N -0.698 5.698 15 C 0.101 3.899 16 C 0.114 3.886 17 N -0.628 5.628 18 C -0.304 4.304 19 H 0.082 0.918 20 C -0.022 4.022 21 N -0.936 5.936 22 Si 1.073 2.927 23 H -0.297 1.297 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.084 3.916 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.406 0.594 41 H 0.102 0.898 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.260 0.740 45 H 0.051 0.949 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -15.041 -18.610 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.022 3.978 3 C -0.209 4.209 4 O -0.217 6.217 5 C 0.105 3.895 6 C -0.231 4.231 7 C -0.101 4.101 8 C -0.179 4.179 9 C -0.088 4.088 10 C -0.095 4.095 11 C -0.135 4.135 12 C 0.306 3.694 13 O -0.418 6.418 14 N -0.348 5.348 15 C -0.006 4.006 16 C -0.013 4.013 17 N -0.357 5.357 18 C -0.430 4.430 19 H 0.100 0.900 20 C -0.221 4.221 21 N -0.578 5.578 22 Si 0.907 3.093 23 H -0.225 1.225 24 H -0.220 1.220 25 H -0.218 1.218 26 C -0.043 4.043 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.241 0.759 41 H 0.120 0.880 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.856 -13.795 -19.577 24.020 hybrid contribution 0.698 -0.963 1.162 1.663 sum -1.158 -14.758 -18.414 23.627 Atomic orbital electron populations 1.22376 0.95009 1.03135 1.03240 1.22443 0.94508 0.93731 0.87113 1.21880 1.02146 0.93500 1.03328 1.86183 1.80664 1.16320 1.38505 1.18758 0.94138 0.82773 0.93809 1.21208 1.07436 0.95623 0.98860 1.20880 0.97508 0.93342 0.98393 1.20950 1.02595 0.99779 0.94586 1.20832 0.97938 0.92348 0.97661 1.18654 1.03337 0.93185 0.94369 1.20485 0.97244 1.02742 0.93073 1.20416 0.90066 0.77368 0.81562 1.90665 1.25186 1.50767 1.75217 1.45494 1.12734 1.57986 1.18636 1.22388 0.89934 0.97747 0.90494 1.22701 0.98917 0.86649 0.93042 1.46173 1.43236 1.04905 1.41392 1.20150 1.20479 0.89231 1.13154 0.90041 1.25653 1.02333 0.90810 1.03287 1.70926 1.28572 1.31083 1.27262 0.83652 0.75714 0.74371 0.75575 1.22511 1.22050 1.21776 1.23288 0.93772 0.94069 0.93133 0.91846 0.91091 0.91179 0.91092 0.91591 0.90556 0.91075 0.85483 0.86128 0.86084 0.85573 0.87620 0.88162 0.75899 0.88050 0.93215 0.93180 0.92957 0.93098 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.19 37.16 0.34 -1.54 16 2 C 0.08 0.85 2.84 -26.73 -0.08 0.78 16 3 C -0.15 -1.50 9.56 37.16 0.36 -1.14 16 4 O -0.30 -4.34 8.94 -19.42 -0.17 -4.51 16 5 C 0.15 2.08 6.58 -39.22 -0.26 1.82 16 6 C -0.21 -2.46 8.27 -39.43 -0.33 -2.79 16 7 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 8 C -0.16 -1.68 10.04 -39.56 -0.40 -2.08 16 9 C -0.07 -0.81 9.68 -39.61 -0.38 -1.20 16 10 C -0.09 -1.28 4.39 -104.47 -0.46 -1.74 16 11 C -0.10 -1.26 5.55 -29.03 -0.16 -1.42 16 12 C 0.52 8.72 7.82 -10.99 -0.09 8.63 16 13 O -0.54 -10.75 15.63 5.56 0.09 -10.67 16 14 N -0.70 -11.98 5.40 -53.49 -0.29 -12.27 16 15 C 0.10 1.87 4.61 -67.68 -0.31 1.56 16 16 C 0.11 2.20 8.44 -8.51 -0.07 2.12 16 17 N -0.63 -15.25 3.68 -184.63 -0.68 -15.93 16 18 C -0.30 -8.66 11.09 -15.06 -0.17 -8.83 16 19 H 0.08 2.43 8.05 -52.49 -0.42 2.01 16 20 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 21 N -0.94 -29.55 13.70 55.49 0.76 -28.79 16 22 Si 1.07 27.59 25.01 -169.99 -4.25 23.34 16 23 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.29 -7.20 6.71 56.52 0.38 -6.83 16 25 H -0.29 -7.11 6.36 56.52 0.36 -6.75 16 26 C 0.08 1.85 5.72 -8.38 -0.05 1.80 16 27 H 0.06 0.69 6.96 -51.93 -0.36 0.33 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.65 6.29 -51.93 -0.33 0.32 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.13 1.22 5.44 -52.49 -0.29 0.94 16 35 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 38 H 0.11 1.39 7.70 -51.93 -0.40 0.99 16 39 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 40 H 0.41 6.64 8.76 -40.82 -0.36 6.28 16 41 H 0.10 1.80 7.45 -51.93 -0.39 1.41 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 45 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 46 H 0.05 1.23 4.03 -51.93 -0.21 1.02 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -35.25 372.57 -8.50 -43.76 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.03 Total: 5.49 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -2.54 Total: -6.03 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.21 Total: -56.98 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.09 Total: -15.18 kcal Atomic # 14 Polarization: 27.59 SS G_CDS: -4.25 Total: 23.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.25 -8.50 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031098656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.163 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds