Wall clock time and date at job start Tue Mar 31 2020 14:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46991 * 2 1 4 4 O 1.42901 * 109.47213 * 120.00458 * 2 1 3 5 5 C 1.35898 * 117.00028 * 85.53803 * 4 2 1 6 6 C 1.38755 * 120.05622 * 354.27447 * 5 4 2 7 7 C 1.38122 * 119.93934 * 180.31890 * 6 5 4 8 8 C 1.38289 * 120.05944 * 359.67919 * 7 6 5 9 9 C 1.38246 * 120.10941 * 0.02675 * 8 7 6 10 10 C 1.38162 * 120.05533 * 0.02562 * 9 8 7 11 11 C 1.50704 * 120.02829 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47154 * 265.00236 * 11 10 9 13 13 O 1.21274 * 119.99964 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99726 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99916 * 180.02562 * 14 12 11 16 16 C 1.53493 * 114.20935 * 154.99772 * 15 14 12 17 17 N 1.47069 * 87.98580 * 87.71567 * 16 15 14 18 18 C 1.36937 * 136.05607 * 207.09034 * 17 16 15 19 19 H 1.07994 * 119.99816 * 355.66906 * 18 17 16 20 20 C 1.38808 * 120.00045 * 175.67817 * 18 17 16 21 21 N 1.31617 * 120.00118 * 177.85679 * 20 18 17 22 22 Si 1.86805 * 119.99836 * 357.84648 * 20 18 17 23 23 H 1.48500 * 109.47133 * 174.55375 * 22 20 18 24 24 H 1.48502 * 109.47479 * 294.55726 * 22 20 18 25 25 H 1.48501 * 109.46777 * 54.56015 * 22 20 18 26 26 C 1.47065 * 87.88381 * 27.34087 * 17 16 15 27 27 H 1.08997 * 109.46648 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46887 * 299.99570 * 1 2 3 29 29 H 1.08994 * 109.47480 * 59.99905 * 1 2 3 30 30 H 1.09003 * 109.46887 * 240.00430 * 2 1 3 31 31 H 1.08998 * 109.46707 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47086 * 300.00336 * 3 2 1 33 33 H 1.09003 * 109.46954 * 60.00471 * 3 2 1 34 34 H 1.07999 * 120.02785 * 0.02562 * 6 5 4 35 35 H 1.08003 * 119.97350 * 179.70605 * 7 6 5 36 36 H 1.08000 * 119.94693 * 180.02562 * 8 7 6 37 37 H 1.08003 * 119.97020 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47310 * 144.99974 * 11 10 9 39 39 H 1.09007 * 109.46743 * 25.00251 * 11 10 9 40 40 H 0.96998 * 120.00710 * 359.97438 * 14 12 11 41 41 H 1.09002 * 113.28269 * 21.92675 * 15 14 12 42 42 H 1.09000 * 113.46512 * 332.93154 * 16 15 14 43 43 H 1.09000 * 113.52167 * 202.50384 * 16 15 14 44 44 H 0.96997 * 119.99879 * 5.08609 * 21 20 18 45 45 H 1.08999 * 113.46533 * 87.43810 * 26 17 16 46 46 H 1.09000 * 113.46666 * 217.87506 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1233 -2.0257 1.0940 6 6 1.6757 -2.7024 -0.0317 7 6 1.7896 -4.0772 -0.1003 8 6 2.3552 -4.7786 0.9488 9 6 2.8074 -4.1061 2.0688 10 6 2.6948 -2.7311 2.1428 11 6 3.1874 -1.9986 3.3642 12 6 2.0404 -1.7837 4.3177 13 8 0.9320 -2.1852 4.0332 14 7 2.2463 -1.1443 5.4862 15 6 1.1313 -0.9357 6.4134 16 6 1.5543 -0.7722 7.8798 17 7 1.7066 0.6676 7.6212 18 6 2.4582 1.6883 8.1393 19 1 3.0954 1.5102 8.9928 20 6 2.4008 2.9518 7.5676 21 7 3.0906 3.9430 8.0911 22 14 1.3448 3.2454 6.0549 23 1 1.3501 4.6923 5.7207 24 1 1.8915 2.4713 4.9116 25 1 -0.0468 2.8062 6.3299 26 6 0.6919 0.5298 6.5657 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.2343 -2.1550 -0.8514 35 1 1.4371 -4.6049 -0.9742 36 1 2.4438 -5.8535 0.8930 37 1 3.2492 -4.6561 2.8866 38 1 3.5993 -1.0339 3.0680 39 1 3.9616 -2.5892 3.8543 40 1 3.1327 -0.8228 5.7136 41 1 0.3079 -1.6335 6.2609 42 1 2.4930 -1.2720 8.1191 43 1 0.7606 -1.0041 8.5900 44 1 3.6957 3.7754 8.8304 45 1 -0.3298 0.6411 6.9286 46 1 0.8958 1.1394 5.6854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031098656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:24 Heat of formation + Delta-G solvation = -11.561895 kcal Electronic energy + Delta-G solvation = -27233.965925 eV Core-core repulsion = 23511.118932 eV Total energy + Delta-G solvation = -3722.846992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59272 -40.93812 -39.49888 -38.49471 -35.08071 -34.45331 -34.06536 -33.32150 -30.88402 -29.95276 -28.36205 -28.13503 -27.06283 -24.63017 -24.30635 -22.94094 -21.74959 -21.42643 -21.14676 -19.55673 -19.09176 -18.17437 -17.63570 -17.15573 -16.78867 -16.46522 -16.32434 -16.02213 -15.75411 -15.56159 -15.45448 -15.06799 -14.85523 -14.53362 -14.21365 -13.98064 -13.61340 -13.60379 -13.36613 -13.26106 -13.12249 -13.01228 -12.77094 -12.73748 -12.58762 -12.27164 -12.08738 -12.05403 -11.69070 -11.51284 -11.29413 -11.20753 -11.11813 -10.93922 -9.93845 -9.75897 -9.24541 -9.02816 -8.63653 -5.48293 0.38984 0.56671 1.35884 1.41782 1.61157 1.67051 2.21280 2.30330 2.47438 2.90281 2.94105 3.21361 3.58898 3.70396 3.80636 3.88467 3.93089 4.03338 4.09812 4.20682 4.28924 4.32127 4.34645 4.39792 4.57229 4.60128 4.63248 4.64429 4.66255 4.70124 4.76458 4.77465 4.82317 4.91565 4.95923 5.13154 5.16649 5.18067 5.21843 5.44942 5.53792 5.60713 5.63677 5.93919 5.95382 6.54073 6.61519 6.69276 7.27553 7.30968 8.24510 8.91164 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.004140 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.346725 B = 6762.040727 C = 8074.379409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 C -0.150 4.150 4 O -0.331 6.331 5 C 0.126 3.874 6 C -0.220 4.220 7 C -0.084 4.084 8 C -0.164 4.164 9 C -0.078 4.078 10 C -0.121 4.121 11 C -0.089 4.089 12 C 0.521 3.479 13 O -0.572 6.572 14 N -0.700 5.700 15 C 0.121 3.879 16 C 0.119 3.881 17 N -0.654 5.654 18 C -0.283 4.283 19 H 0.058 0.942 20 C -0.077 4.077 21 N -0.973 5.973 22 Si 1.110 2.890 23 H -0.306 1.306 24 H -0.282 1.282 25 H -0.273 1.273 26 C 0.073 3.927 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.410 0.590 41 H 0.117 0.883 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.249 0.751 45 H 0.063 0.937 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 -17.568 -20.646 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 C -0.207 4.207 4 O -0.246 6.246 5 C 0.080 3.920 6 C -0.238 4.238 7 C -0.102 4.102 8 C -0.182 4.182 9 C -0.096 4.096 10 C -0.122 4.122 11 C -0.128 4.128 12 C 0.309 3.691 13 O -0.451 6.451 14 N -0.350 5.350 15 C 0.014 3.986 16 C -0.006 4.006 17 N -0.383 5.383 18 C -0.410 4.410 19 H 0.076 0.924 20 C -0.270 4.270 21 N -0.619 5.619 22 Si 0.940 3.060 23 H -0.235 1.235 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.053 4.053 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.120 0.880 39 H 0.149 0.851 40 H 0.245 0.755 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.500 -16.383 -21.611 27.234 hybrid contribution 0.885 -0.317 1.801 2.031 sum -1.614 -16.700 -19.811 25.961 Atomic orbital electron populations 1.22353 0.94862 1.02739 1.03374 1.22678 0.94681 0.94033 0.87078 1.21912 1.02113 0.93135 1.03524 1.86143 1.81173 1.17004 1.40238 1.19082 0.95187 0.82781 0.94909 1.21462 1.07254 0.96421 0.98703 1.21294 0.96563 0.93007 0.99336 1.21339 1.01597 1.01203 0.94030 1.21140 0.97871 0.91828 0.98747 1.18874 1.04697 0.94147 0.94523 1.20486 0.96445 1.03278 0.92596 1.21018 0.90553 0.76171 0.81361 1.90642 1.26712 1.52024 1.75764 1.45569 1.12549 1.58068 1.18814 1.22160 0.90620 0.95543 0.90260 1.22888 1.00266 0.83430 0.94031 1.46215 1.43734 1.06239 1.42114 1.20043 1.19411 0.90222 1.11358 0.92414 1.26678 1.03571 0.91217 1.05512 1.71003 1.30405 1.32283 1.28248 0.83163 0.75584 0.73806 0.73467 1.23483 1.20958 1.19876 1.23517 0.93740 0.96249 0.91789 0.92454 0.93501 0.88423 0.89115 0.91670 0.87825 0.93344 0.84031 0.83262 0.83452 0.83849 0.87972 0.85061 0.75480 0.86519 0.91886 0.90931 0.94186 0.91983 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 9.19 71.98 0.66 -2.85 16 2 C 0.07 1.48 2.84 30.60 0.09 1.56 16 3 C -0.15 -2.86 9.56 71.98 0.69 -2.17 16 4 O -0.33 -9.42 8.94 -92.41 -0.83 -10.24 16 5 C 0.13 3.35 6.58 22.51 0.15 3.50 16 6 C -0.22 -4.69 8.27 22.37 0.18 -4.50 16 7 C -0.08 -1.50 10.04 22.25 0.22 -1.28 16 8 C -0.16 -2.95 10.04 22.28 0.22 -2.72 16 9 C -0.08 -1.65 9.68 22.25 0.22 -1.43 16 10 C -0.12 -3.13 4.39 -19.77 -0.09 -3.21 16 11 C -0.09 -2.23 5.55 29.10 0.16 -2.07 16 12 C 0.52 16.78 7.82 87.66 0.69 17.47 16 13 O -0.57 -22.11 15.63 -3.01 -0.05 -22.16 16 14 N -0.70 -22.87 5.40 -441.52 -2.39 -25.26 16 15 C 0.12 4.23 4.61 45.55 0.21 4.44 16 16 C 0.12 4.31 8.44 83.18 0.70 5.01 16 17 N -0.65 -30.97 3.68 -738.04 -2.72 -33.69 16 18 C -0.28 -16.21 11.09 84.03 0.93 -15.28 16 19 H 0.06 3.53 8.05 -2.91 -0.02 3.50 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 21 N -0.97 -63.10 13.70 21.65 0.30 -62.80 16 22 Si 1.11 56.41 25.01 68.60 1.72 58.13 16 23 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 24 H -0.28 -13.66 6.71 99.48 0.67 -12.99 16 25 H -0.27 -12.87 6.36 99.48 0.63 -12.24 16 26 C 0.07 3.10 5.72 83.26 0.48 3.57 16 27 H 0.06 1.19 6.96 -2.39 -0.02 1.17 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.49 6.29 -2.39 -0.01 1.48 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.14 2.43 5.44 -2.91 -0.02 2.41 16 35 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 38 H 0.10 2.64 7.70 -2.39 -0.02 2.62 16 39 H 0.13 2.37 8.05 -2.38 -0.02 2.35 16 40 H 0.41 12.81 8.76 -92.71 -0.81 12.00 16 41 H 0.12 3.82 7.45 -2.39 -0.02 3.80 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.25 16.06 8.73 -92.71 -0.81 15.25 16 45 H 0.06 2.52 8.07 -2.39 -0.02 2.50 16 46 H 0.04 1.70 4.03 -2.39 -0.01 1.69 16 Total: -1.00 -77.47 372.57 2.04 -75.43 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.02 Total: 24.73 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 5.98 Total: -4.14 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -4.81 Total: -121.74 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.87 Total: -32.40 kcal Atomic # 14 Polarization: 56.41 SS G_CDS: 1.72 Total: 58.13 kcal Total: -77.47 2.04 -75.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031098656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.871 kcal (2) G-P(sol) polarization free energy of solvation -77.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds