Wall clock time and date at job start Tue Mar 31 2020 14:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46935 * 2 1 4 4 O 1.42907 * 109.46892 * 119.99320 * 2 1 3 5 5 C 1.42901 * 113.99665 * 150.00313 * 4 2 1 6 6 C 1.50698 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.38360 * 119.85081 * 90.00145 * 6 5 4 8 8 C 1.37959 * 120.14155 * 179.97438 * 7 6 5 9 9 C 1.39573 * 119.85482 * 0.02562 * 8 7 6 10 10 C 1.47844 * 120.14526 * 179.97438 * 9 8 7 11 11 O 1.21551 * 120.00378 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00049 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00376 * 179.97438 * 12 10 9 14 14 C 1.53496 * 114.20904 * 155.00161 * 13 12 10 15 15 N 1.47062 * 87.98485 * 87.72044 * 14 13 12 16 16 C 1.36939 * 136.05593 * 207.08750 * 15 14 13 17 17 H 1.08008 * 119.99868 * 7.82597 * 16 15 14 18 18 C 1.38808 * 120.00203 * 187.82575 * 16 15 14 19 19 N 1.31618 * 119.99998 * 195.17052 * 18 16 15 20 20 Si 1.86797 * 119.99840 * 15.16580 * 18 16 15 21 21 H 1.48503 * 109.47450 * 270.00422 * 20 18 16 22 22 H 1.48503 * 109.47360 * 30.00092 * 20 18 16 23 23 H 1.48498 * 109.47360 * 150.00270 * 20 18 16 24 24 C 1.47059 * 87.88616 * 27.34176 * 15 14 13 25 25 C 1.39580 * 119.71119 * 0.25012 * 9 8 7 26 26 C 1.37959 * 119.85019 * 359.47751 * 25 9 8 27 27 H 1.09003 * 109.47076 * 300.00090 * 1 2 3 28 28 H 1.08996 * 109.47027 * 60.00037 * 1 2 3 29 29 H 1.08994 * 109.47252 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46978 * 239.99379 * 2 1 3 31 31 H 1.09004 * 109.46661 * 299.99628 * 3 2 1 32 32 H 1.08993 * 109.47794 * 59.99879 * 3 2 1 33 33 H 1.09002 * 109.46889 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47563 * 59.99737 * 5 4 2 35 35 H 1.09003 * 109.46905 * 299.99864 * 5 4 2 36 36 H 1.08002 * 119.93244 * 0.02562 * 7 6 5 37 37 H 1.08000 * 120.07337 * 179.97438 * 8 7 6 38 38 H 0.97007 * 119.99743 * 359.97438 * 12 10 9 39 39 H 1.09003 * 113.27537 * 21.93512 * 13 12 10 40 40 H 1.09008 * 113.46447 * 332.93478 * 14 13 12 41 41 H 1.08996 * 113.51824 * 202.51288 * 14 13 12 42 42 H 0.96995 * 120.00365 * 354.90363 * 19 18 16 43 43 H 1.08997 * 113.47135 * 87.43718 * 24 15 14 44 44 H 1.09007 * 113.47198 * 217.88025 * 24 15 14 45 45 H 1.08001 * 120.07650 * 179.72387 * 25 9 8 46 46 H 1.07994 * 119.92884 * 180.27200 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.2660 -1.3244 0.9888 6 6 3.6693 -1.9986 2.2748 7 6 3.2879 -3.3066 2.5156 8 6 3.6543 -3.9298 3.6907 9 6 4.4107 -3.2378 4.6377 10 6 4.8063 -3.8992 5.8993 11 8 4.4732 -5.0484 6.1135 12 7 5.5373 -3.2283 6.8116 13 6 5.9288 -3.8835 8.0620 14 6 7.1929 -3.3007 8.7090 15 7 6.3294 -2.3313 9.4000 16 6 6.4732 -1.0656 9.9026 17 1 7.3796 -0.5094 9.7139 18 6 5.4541 -0.4975 10.6545 19 7 5.4500 0.7985 10.8846 20 14 4.0885 -1.5721 11.3398 21 1 2.9801 -1.6521 10.3548 22 1 4.6160 -2.9351 11.6031 23 1 3.5837 -0.9835 12.6062 24 6 5.2454 -3.3218 9.3196 25 6 4.7872 -1.9165 4.3910 26 6 4.4191 -1.3068 3.2095 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 4.0200 -0.5873 0.7126 35 1 3.1809 -2.0706 0.1989 36 1 2.7030 -3.8412 1.7818 37 1 3.3557 -4.9508 3.8777 38 1 5.8040 -2.3116 6.6402 39 1 5.9199 -4.9717 7.9993 40 1 7.8748 -2.8416 7.9931 41 1 7.6949 -3.9935 9.3843 42 1 6.1961 1.3453 10.5926 43 1 5.2332 -4.0209 10.1558 44 1 4.2680 -2.8808 9.1239 45 1 5.3687 -1.3740 5.1217 46 1 4.7134 -0.2861 3.0154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031378356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:18 Heat of formation + Delta-G solvation = 1.432594 kcal Electronic energy + Delta-G solvation = -25864.016882 eV Core-core repulsion = 22141.733373 eV Total energy + Delta-G solvation = -3722.283509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.30038 -39.26705 -38.39815 -37.55171 -33.76586 -33.38613 -32.25401 -31.40553 -31.01235 -28.01566 -27.61539 -26.55109 -25.31428 -23.27320 -22.78886 -22.00335 -21.66392 -20.35233 -19.51278 -17.92562 -17.48496 -17.20120 -16.32201 -16.06195 -15.65935 -15.23100 -14.93088 -14.80803 -14.57254 -14.20783 -13.89685 -13.78241 -13.61112 -13.47980 -13.24631 -13.05300 -12.94025 -12.60048 -12.50273 -12.46143 -11.99651 -11.80072 -11.47829 -11.40675 -11.21334 -11.04600 -10.92894 -10.52521 -10.17912 -9.92302 -9.81085 -9.75634 -9.25996 -9.10593 -9.03177 -8.76838 -8.50349 -7.23004 -6.33056 -3.26525 0.68339 1.26426 2.80165 3.33660 3.44417 3.46422 3.49753 3.63193 3.91435 4.41271 4.52752 4.58274 4.62996 4.68734 4.73571 4.77625 4.81830 4.88987 4.98380 5.02185 5.15275 5.23450 5.25486 5.36973 5.39453 5.44092 5.46318 5.47953 5.65161 5.82494 5.85276 5.85616 5.87323 5.91298 6.14472 6.19640 6.22236 6.28405 6.34352 6.37406 6.43696 6.72157 6.90580 6.98088 7.08188 7.80857 8.20418 8.41736 8.93896 9.47437 10.33517 11.16521 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013962 B = 0.002824 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.955011 B = 9914.252807 C =11010.275488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.177 4.177 4 O -0.374 6.374 5 C 0.102 3.898 6 C -0.072 4.072 7 C -0.109 4.109 8 C -0.063 4.063 9 C -0.122 4.122 10 C 0.557 3.443 11 O -0.545 6.545 12 N -0.688 5.688 13 C 0.099 3.901 14 C 0.109 3.891 15 N -0.624 5.624 16 C -0.308 4.308 17 H 0.082 0.918 18 C -0.021 4.021 19 N -0.930 5.930 20 Si 1.060 2.940 21 H -0.293 1.293 22 H -0.281 1.281 23 H -0.295 1.295 24 C 0.087 3.913 25 C -0.085 4.085 26 C -0.104 4.104 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.406 0.594 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.261 0.739 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.132 0.868 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.604 -4.720 -24.598 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.234 4.234 4 O -0.294 6.294 5 C 0.026 3.974 6 C -0.072 4.072 7 C -0.127 4.127 8 C -0.082 4.082 9 C -0.125 4.125 10 C 0.344 3.656 11 O -0.425 6.425 12 N -0.338 5.338 13 C -0.007 4.007 14 C -0.018 4.018 15 N -0.353 5.353 16 C -0.434 4.434 17 H 0.100 0.900 18 C -0.221 4.221 19 N -0.572 5.572 20 Si 0.892 3.108 21 H -0.221 1.221 22 H -0.208 1.208 23 H -0.223 1.223 24 C -0.040 4.040 25 C -0.104 4.104 26 C -0.123 4.123 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.243 0.757 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.150 0.850 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.304 -5.226 -23.302 24.699 hybrid contribution 1.814 0.575 -0.864 2.090 sum -4.490 -4.652 -24.166 25.015 Atomic orbital electron populations 1.21867 0.93509 1.02785 1.02622 1.22106 0.95133 0.92497 0.88047 1.22315 1.01560 0.96781 1.02764 1.88057 1.35912 1.69859 1.35558 1.21367 0.86370 0.95347 0.94321 1.19745 0.97615 0.94168 0.95707 1.20986 0.99772 0.94499 0.97441 1.21245 0.94658 1.00303 0.92023 1.20061 1.01915 0.94971 0.95538 1.18246 0.78131 0.85929 0.83283 1.90733 1.55365 1.17438 1.78916 1.45436 1.53475 1.17230 1.17668 1.22463 0.97906 0.96740 0.83618 1.22748 0.93204 0.91606 0.94241 1.46395 1.07600 1.11191 1.70111 1.20124 1.05860 0.86374 1.31043 0.90034 1.25751 1.01067 0.97867 0.97365 1.70912 1.31931 1.03318 1.51036 0.83793 0.75595 0.74765 0.76650 1.22108 1.20782 1.22272 1.23201 0.94556 0.91721 0.94497 1.21420 0.98183 0.93682 0.97077 1.20978 0.98255 0.99812 0.93208 0.91611 0.91277 0.91964 0.92271 0.91674 0.91530 0.92461 0.92291 0.92330 0.85394 0.84447 0.75703 0.87769 0.93259 0.93220 0.92864 0.92638 0.92663 0.84990 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.56 37.16 0.36 -0.66 16 2 C 0.08 0.60 3.34 -26.73 -0.09 0.51 16 3 C -0.18 -1.20 9.53 37.16 0.35 -0.85 16 4 O -0.37 -3.85 9.97 -35.23 -0.35 -4.21 16 5 C 0.10 0.88 5.86 36.00 0.21 1.09 16 6 C -0.07 -0.77 5.52 -104.53 -0.58 -1.34 16 7 C -0.11 -1.17 9.68 -39.64 -0.38 -1.56 16 8 C -0.06 -0.81 9.60 -39.19 -0.38 -1.18 16 9 C -0.12 -1.74 5.87 -104.97 -0.62 -2.36 16 10 C 0.56 9.41 7.77 -12.33 -0.10 9.32 16 11 O -0.55 -10.56 15.94 5.32 0.08 -10.47 16 12 N -0.69 -11.70 5.35 -54.43 -0.29 -12.00 16 13 C 0.10 1.80 4.61 -67.68 -0.31 1.48 16 14 C 0.11 2.06 8.44 -8.52 -0.07 1.99 16 15 N -0.62 -14.90 3.62 -184.65 -0.67 -15.57 16 16 C -0.31 -8.64 11.03 -15.06 -0.17 -8.81 16 17 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 18 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 19 N -0.93 -29.10 13.70 55.49 0.76 -28.34 16 20 Si 1.06 26.97 25.50 -169.99 -4.34 22.64 16 21 H -0.29 -7.31 6.97 56.52 0.39 -6.92 16 22 H -0.28 -6.66 5.66 56.52 0.32 -6.34 16 23 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 24 C 0.09 1.87 5.44 -8.39 -0.05 1.82 16 25 C -0.08 -1.08 9.54 -39.18 -0.37 -1.45 16 26 C -0.10 -1.17 9.68 -39.64 -0.38 -1.56 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.36 7.79 -51.93 -0.40 -0.05 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 34 H 0.06 0.43 7.81 -51.93 -0.41 0.03 16 35 H 0.06 0.41 8.03 -51.93 -0.42 -0.01 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.14 1.70 7.65 -52.49 -0.40 1.30 16 38 H 0.41 6.61 6.80 -40.82 -0.28 6.34 16 39 H 0.10 1.78 7.45 -51.93 -0.39 1.39 16 40 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.26 8.03 8.73 -40.82 -0.36 7.67 16 43 H 0.06 1.16 7.02 -51.93 -0.36 0.80 16 44 H 0.06 1.27 6.22 -51.93 -0.32 0.94 16 45 H 0.13 1.59 6.41 -52.49 -0.34 1.25 16 46 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -34.01 377.74 -8.97 -42.98 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.20 Total: 3.54 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.67 Total: -4.27 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.20 Total: -55.91 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.27 Total: -14.68 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -4.34 Total: 22.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.01 -8.97 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031378356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.416 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds