Wall clock time and date at job start Tue Mar 31 2020 14:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 O 1.42902 * 109.46790 * 119.99710 * 2 1 3 5 5 C 1.35901 * 117.00133 * 84.85014 * 4 2 1 6 6 C 1.38760 * 120.05381 * 174.34896 * 5 4 2 7 7 C 1.38123 * 119.93998 * 179.70388 * 6 5 4 8 8 C 1.38291 * 120.05580 * 0.58933 * 7 6 5 9 9 C 1.38244 * 120.11027 * 359.68624 * 8 7 6 10 10 C 1.50704 * 119.96834 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46697 * 269.97456 * 10 9 8 12 12 O 1.21274 * 120.00335 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99566 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99985 * 179.97438 * 13 11 10 15 15 C 1.53939 * 113.74467 * 253.74355 * 14 13 11 16 16 N 1.47812 * 86.04002 * 222.08536 * 15 14 13 17 17 C 1.36931 * 134.45903 * 204.64853 * 16 15 14 18 18 H 1.08005 * 120.00184 * 179.86057 * 17 16 15 19 19 C 1.38815 * 120.00173 * 359.86193 * 17 16 15 20 20 N 1.31614 * 119.99781 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00271 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47095 * 89.99658 * 21 19 17 23 23 H 1.48494 * 109.47210 * 209.99943 * 21 19 17 24 24 H 1.48501 * 109.46904 * 330.00006 * 21 19 17 25 25 C 1.47586 * 91.04685 * 24.54717 * 16 15 14 26 26 C 1.38168 * 120.05563 * 0.02562 * 9 8 7 27 27 H 1.09003 * 109.47282 * 60.00264 * 1 2 3 28 28 H 1.09002 * 109.47814 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47415 * 300.00523 * 1 2 3 30 30 H 1.08996 * 109.47227 * 239.99066 * 2 1 3 31 31 H 1.09003 * 109.47114 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46991 * 299.99647 * 3 2 1 33 33 H 1.08996 * 109.47691 * 59.99350 * 3 2 1 34 34 H 1.07998 * 120.02915 * 359.97094 * 6 5 4 35 35 H 1.07999 * 119.97505 * 180.29806 * 7 6 5 36 36 H 1.07999 * 119.94192 * 179.70260 * 8 7 6 37 37 H 1.08995 * 109.47293 * 29.97764 * 10 9 8 38 38 H 1.08999 * 109.46907 * 149.97534 * 10 9 8 39 39 H 0.97003 * 120.00288 * 359.97438 * 13 11 10 40 40 H 1.08998 * 112.94166 * 25.33550 * 14 13 11 41 41 H 1.08998 * 113.76933 * 336.34799 * 15 14 13 42 42 H 1.08998 * 113.77232 * 107.74531 * 15 14 13 43 43 H 0.97000 * 120.00363 * 180.02562 * 20 19 17 44 44 H 1.09006 * 113.76676 * 221.15187 * 25 16 15 45 45 H 1.08999 * 113.76938 * 89.76072 * 25 16 15 46 46 H 1.08002 * 120.02419 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.1094 -2.0270 1.0991 6 6 2.6740 -2.7344 2.1508 7 6 2.7721 -4.1105 2.0821 8 6 2.3193 -4.7820 0.9612 9 6 1.7616 -4.0789 -0.0904 10 6 1.2686 -4.8140 -1.3101 11 6 2.3879 -4.9310 -2.3124 12 8 3.4784 -4.4639 -2.0610 13 7 2.1768 -5.5547 -3.4884 14 6 3.2646 -5.6680 -4.4632 15 6 3.1088 -4.7343 -5.6771 16 7 3.5541 -5.8855 -6.4902 17 6 4.1587 -6.0206 -7.7114 18 1 4.3887 -7.0039 -8.0944 19 6 4.4761 -4.8936 -8.4572 20 7 4.1954 -3.6953 -7.9907 21 14 5.3003 -5.0778 -10.1234 22 1 4.2623 -5.1802 -11.1804 23 1 6.1580 -3.8942 -10.3849 24 1 6.1356 -6.3056 -10.1294 25 6 3.0879 -6.8304 -5.4568 26 6 1.6557 -2.7029 -0.0239 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.0325 -2.2100 3.0242 35 1 3.2071 -4.6620 2.9024 36 1 2.4013 -5.8575 0.9074 37 1 0.9325 -5.8103 -1.0228 38 1 0.4387 -4.2647 -1.7546 39 1 1.3046 -5.9286 -3.6894 40 1 4.2523 -5.6295 -4.0039 41 1 2.0794 -4.4323 -5.8699 42 1 3.8067 -3.8970 -5.6798 43 1 4.4168 -2.9078 -8.5119 44 1 3.7691 -7.6636 -5.2839 45 1 2.0523 -7.1455 -5.5847 46 1 1.2196 -2.1541 -0.8456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031468980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:33 Heat of formation + Delta-G solvation = -22.320792 kcal Electronic energy + Delta-G solvation = -26100.518315 eV Core-core repulsion = 22377.204782 eV Total energy + Delta-G solvation = -3723.313533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44863 -40.80202 -39.36603 -38.45351 -35.10685 -34.48397 -33.80127 -33.15531 -30.88261 -29.70454 -28.40900 -28.13425 -26.62190 -25.06511 -24.22083 -22.89361 -21.74521 -21.40687 -21.23961 -18.90295 -18.79107 -17.99999 -17.29796 -17.10932 -16.96327 -16.81028 -16.37813 -15.96191 -15.73875 -15.41771 -15.09775 -14.82398 -14.61629 -14.27614 -14.10561 -13.66230 -13.59662 -13.39324 -13.27703 -13.20695 -13.10936 -12.85694 -12.84181 -12.69759 -12.61752 -12.38273 -12.26122 -12.08396 -11.95443 -11.66992 -11.57401 -11.53203 -10.90895 -10.86610 -9.92241 -9.76229 -9.08172 -8.98230 -7.93255 -5.28499 0.36802 0.53635 1.44578 1.47269 1.55963 1.71485 2.20295 2.27247 2.49738 2.90223 3.25206 3.40097 3.61684 3.81340 3.84652 3.91826 3.97254 4.03673 4.10415 4.18172 4.36105 4.36869 4.44570 4.53018 4.59442 4.62243 4.66599 4.70744 4.74825 4.79430 4.82735 4.90680 4.95763 5.07826 5.16065 5.19692 5.22942 5.25161 5.39324 5.46884 5.51777 5.65740 5.72929 5.88495 5.90735 6.50186 6.68512 6.86913 7.38228 7.57033 8.50095 9.23508 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.002700 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.816028 B =10366.102748 C =11600.670915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.066 3.934 3 C -0.146 4.146 4 O -0.326 6.326 5 C 0.112 3.888 6 C -0.169 4.169 7 C -0.083 4.083 8 C -0.154 4.154 9 C -0.039 4.039 10 C -0.094 4.094 11 C 0.510 3.490 12 O -0.585 6.585 13 N -0.703 5.703 14 C 0.121 3.879 15 C 0.152 3.848 16 N -0.640 5.640 17 C -0.235 4.235 18 H 0.090 0.910 19 C -0.070 4.070 20 N -0.955 5.955 21 Si 0.983 3.017 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.266 1.266 25 C 0.123 3.877 26 C -0.207 4.207 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.418 0.582 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.029 0.971 43 H 0.248 0.752 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.765 1.089 20.972 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 C -0.203 4.203 4 O -0.240 6.240 5 C 0.067 3.933 6 C -0.188 4.188 7 C -0.100 4.100 8 C -0.172 4.172 9 C -0.039 4.039 10 C -0.134 4.134 11 C 0.298 3.702 12 O -0.464 6.464 13 N -0.355 5.355 14 C 0.014 3.986 15 C 0.025 3.975 16 N -0.368 5.368 17 C -0.363 4.363 18 H 0.108 0.892 19 C -0.263 4.263 20 N -0.604 5.604 21 Si 0.810 3.190 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.190 1.190 25 C -0.002 4.002 26 C -0.226 4.226 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.155 0.845 35 H 0.172 0.828 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.144 0.856 39 H 0.255 0.745 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.812 1.635 21.009 23.684 hybrid contribution 0.206 0.264 -1.549 1.585 sum -10.606 1.899 19.460 22.244 Atomic orbital electron populations 1.22337 0.93563 1.03105 1.04032 1.22649 0.95583 0.94210 0.86494 1.21872 1.01681 0.92620 1.04137 1.86069 1.81645 1.16465 1.39864 1.19188 0.96147 0.82828 0.95117 1.20694 1.04435 0.94580 0.99092 1.21239 0.97271 0.93001 0.98521 1.21214 1.00971 1.01006 0.93972 1.19352 0.96944 0.92782 0.94854 1.20773 0.96410 1.04856 0.91322 1.21211 0.89792 0.76649 0.82515 1.90724 1.28311 1.48834 1.78560 1.45875 1.15103 1.58208 1.16356 1.23078 0.91353 0.97322 0.86807 1.22593 0.96158 0.92078 0.86669 1.46065 1.68308 1.03943 1.18437 1.19441 1.30481 0.93451 0.92972 0.89181 1.25719 1.02801 0.94930 1.02831 1.70039 1.53657 0.97381 1.39325 0.85018 0.77847 0.77050 0.79055 1.20990 1.22326 1.19013 1.23018 0.98978 0.93139 0.85094 1.21248 1.07394 0.95258 0.98664 0.89404 0.92267 0.91069 0.92082 0.92568 0.88786 0.90794 0.84450 0.82803 0.84231 0.84085 0.85621 0.74507 0.89552 0.95484 0.95288 0.94315 0.91882 0.91314 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.17 71.98 0.66 -2.10 16 2 C 0.07 1.36 2.85 30.59 0.09 1.45 16 3 C -0.15 -2.42 9.56 71.98 0.69 -1.74 16 4 O -0.33 -8.18 9.80 -92.43 -0.91 -9.09 16 5 C 0.11 2.91 6.60 22.51 0.15 3.05 16 6 C -0.17 -3.91 9.99 22.37 0.22 -3.69 16 7 C -0.08 -1.67 10.04 22.25 0.22 -1.45 16 8 C -0.15 -3.29 9.70 22.28 0.22 -3.07 16 9 C -0.04 -0.90 4.37 -19.88 -0.09 -0.99 16 10 C -0.09 -1.75 5.83 29.10 0.17 -1.58 16 11 C 0.51 14.80 7.82 87.66 0.69 15.49 16 12 O -0.58 -23.50 15.66 -3.01 -0.05 -23.54 16 13 N -0.70 -19.44 5.37 -447.40 -2.40 -21.84 16 14 C 0.12 4.63 4.40 46.74 0.21 4.84 16 15 C 0.15 7.43 7.33 86.44 0.63 8.06 16 16 N -0.64 -32.90 3.70 -716.68 -2.65 -35.55 16 17 C -0.24 -13.25 10.70 84.04 0.90 -12.35 16 18 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 19 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 20 N -0.96 -59.17 11.39 21.65 0.25 -58.92 16 21 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 C 0.12 4.62 8.69 86.48 0.75 5.37 16 26 C -0.21 -5.23 7.89 22.36 0.18 -5.05 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 0.99 6.91 -2.39 -0.02 0.97 16 29 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.06 1.41 6.31 -2.39 -0.02 1.40 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 37 H 0.14 1.57 8.08 -2.39 -0.02 1.55 16 38 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 39 H 0.42 8.13 8.71 -92.71 -0.81 7.32 16 40 H 0.09 3.76 7.51 -2.39 -0.02 3.74 16 41 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.03 1.67 7.17 -2.39 -0.02 1.65 16 43 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 45 H 0.07 2.19 8.11 -2.39 -0.02 2.17 16 46 H 0.13 3.06 5.43 -2.91 -0.02 3.04 16 Total: -1.00 -78.78 380.85 2.58 -76.20 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.17 Total: 21.95 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.15 Total: 2.66 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -4.81 Total: -116.32 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.95 Total: -32.63 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -78.78 2.58 -76.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031468980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.878 kcal (2) G-P(sol) polarization free energy of solvation -78.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds