Wall clock time and date at job start Tue Mar 31 2020 14:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46828 * 2 1 4 4 O 1.42898 * 109.47124 * 119.99861 * 2 1 3 5 5 C 1.35650 * 116.99767 * 85.05188 * 4 2 1 6 6 C 1.38709 * 120.15381 * 354.74445 * 5 4 2 7 7 C 1.38053 * 120.08876 * 179.97438 * 6 5 4 8 8 C 1.38549 * 120.39100 * 0.02562 * 7 6 5 9 9 C 1.37781 * 120.29821 * 359.97438 * 8 7 6 10 10 C 1.39708 * 119.90953 * 0.02562 * 9 8 7 11 11 C 1.47539 * 120.19122 * 179.97438 * 10 9 8 12 12 O 1.21590 * 119.99945 * 180.02562 * 11 10 9 13 13 N 1.34775 * 120.00128 * 0.02562 * 11 10 9 14 14 C 1.46493 * 119.99942 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47104 * 180.02562 * 14 13 11 16 16 C 1.53945 * 113.73880 * 273.74210 * 15 14 13 17 17 N 1.47807 * 86.03705 * 222.08367 * 16 15 14 18 18 C 1.36941 * 134.46177 * 204.64701 * 17 16 15 19 19 H 1.07999 * 120.00427 * 182.54618 * 18 17 16 20 20 C 1.38818 * 119.99540 * 2.54215 * 18 17 16 21 21 N 1.31622 * 119.99873 * 352.73031 * 20 18 17 22 22 Si 1.86794 * 119.99847 * 172.72749 * 20 18 17 23 23 H 1.48506 * 109.46977 * 94.97289 * 22 20 18 24 24 H 1.48502 * 109.47082 * 214.97114 * 22 20 18 25 25 H 1.48498 * 109.47425 * 334.97397 * 22 20 18 26 26 C 1.47583 * 91.05215 * 24.54504 * 17 16 15 27 27 H 1.09009 * 109.46881 * 300.00114 * 1 2 3 28 28 H 1.09003 * 109.47326 * 59.99616 * 1 2 3 29 29 H 1.08999 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47037 * 240.00385 * 2 1 3 31 31 H 1.09003 * 109.47005 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47229 * 300.00109 * 3 2 1 33 33 H 1.08994 * 109.47357 * 60.00655 * 3 2 1 34 34 H 1.08007 * 119.95057 * 359.96601 * 6 5 4 35 35 H 1.08003 * 119.80306 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.84830 * 179.97438 * 8 7 6 37 37 H 1.08004 * 120.04285 * 179.75085 * 9 8 7 38 38 H 0.96999 * 119.99838 * 0.02562 * 13 11 10 39 39 H 1.09002 * 109.47054 * 299.99951 * 14 13 11 40 40 H 1.08992 * 109.47728 * 60.00473 * 14 13 11 41 41 H 1.08995 * 112.94289 * 45.32960 * 15 14 13 42 42 H 1.09002 * 113.76816 * 336.34372 * 16 15 14 43 43 H 1.08996 * 113.77345 * 107.74599 * 16 15 14 44 44 H 0.96999 * 119.99815 * 180.02562 * 21 20 18 45 45 H 1.08993 * 113.77090 * 221.14969 * 26 17 16 46 46 H 1.09005 * 113.76510 * 89.75304 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1133 -2.0241 1.0976 6 6 1.6662 -2.7018 -0.0271 7 6 1.7762 -4.0762 -0.0963 8 6 2.3319 -4.7886 0.9541 9 6 2.7812 -4.1318 2.0788 10 6 2.6760 -2.7411 2.1621 11 6 3.1545 -2.0315 3.3638 12 8 3.0608 -0.8212 3.4328 13 7 3.6955 -2.7248 4.3851 14 6 4.1702 -2.0202 5.5786 15 6 4.7348 -3.0323 6.5776 16 6 3.6718 -3.6435 7.5084 17 7 4.6677 -3.4750 8.5875 18 6 4.8872 -4.0846 9.7939 19 1 5.6841 -3.7399 10.4361 20 6 4.0852 -5.1457 10.1914 21 7 3.0278 -5.4740 9.4797 22 14 4.5069 -6.1076 11.7361 23 1 3.7411 -5.5599 12.8847 24 1 4.1529 -7.5366 11.5415 25 1 5.9616 -5.9908 12.0103 26 6 5.3319 -2.3882 7.8419 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.2313 -2.1534 -0.8497 35 1 1.4270 -4.5991 -0.9744 36 1 2.4133 -5.8636 0.8908 37 1 3.2100 -4.6916 2.8968 38 1 3.7706 -3.6903 4.3300 39 1 4.9511 -1.3138 5.2969 40 1 3.3407 -1.4814 6.0364 41 1 5.3869 -3.7708 6.1115 42 1 2.7841 -3.0225 7.6290 43 1 3.4373 -4.6840 7.2840 44 1 2.4672 -6.2152 9.7576 45 1 6.4203 -2.4284 7.8833 46 1 4.9329 -1.3977 8.0607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032141804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:24 Heat of formation + Delta-G solvation = 5.522505 kcal Electronic energy + Delta-G solvation = -26203.244458 eV Core-core repulsion = 22481.138301 eV Total energy + Delta-G solvation = -3722.106157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.75084 -39.15707 -37.96942 -37.51127 -34.31837 -33.41806 -32.23780 -31.38901 -29.98512 -28.63878 -27.54559 -25.92492 -24.76223 -23.93233 -23.24683 -21.82234 -21.12564 -20.30408 -19.23700 -18.44269 -17.19262 -16.66624 -16.35883 -15.73654 -15.43824 -15.15046 -15.11603 -14.97637 -14.63868 -14.15530 -13.92189 -13.68090 -13.56583 -13.10277 -13.01418 -12.74308 -12.57313 -12.50217 -12.27888 -12.06291 -12.01916 -11.54591 -11.37525 -11.27821 -11.07669 -11.00101 -10.91678 -10.67638 -10.54674 -9.96354 -9.72053 -9.55433 -9.39961 -9.25656 -8.72853 -8.70114 -8.35532 -6.86546 -5.75869 -3.06320 0.74327 1.20750 2.96135 2.99299 3.39426 3.41555 3.45412 3.47452 3.80788 4.42634 4.47113 4.52875 4.55725 4.65505 4.77234 4.85367 4.98562 5.12439 5.21096 5.22131 5.24865 5.36816 5.40166 5.41510 5.50437 5.54156 5.58828 5.71675 5.82821 5.88101 5.89397 5.99861 6.05494 6.12274 6.22675 6.30928 6.41176 6.49747 6.62056 6.70319 6.82923 7.23885 7.27208 7.39424 7.56399 7.79377 7.99706 8.50866 9.06400 9.72806 10.62588 11.41845 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.002505 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.235762 B =11174.397355 C =11956.154010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.272 6.272 5 C 0.187 3.813 6 C -0.226 4.226 7 C -0.056 4.056 8 C -0.168 4.168 9 C -0.046 4.046 10 C -0.170 4.170 11 C 0.555 3.445 12 O -0.525 6.525 13 N -0.721 5.721 14 C 0.133 3.867 15 C -0.153 4.153 16 C 0.169 3.831 17 N -0.613 5.613 18 C -0.222 4.222 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.129 3.871 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.398 0.602 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.028 0.972 43 H 0.070 0.930 44 H 0.253 0.747 45 H 0.045 0.955 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 5.940 -24.988 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.183 6.183 5 C 0.139 3.861 6 C -0.245 4.245 7 C -0.075 4.075 8 C -0.187 4.187 9 C -0.065 4.065 10 C -0.174 4.174 11 C 0.342 3.658 12 O -0.402 6.402 13 N -0.373 5.373 14 C 0.009 3.991 15 C -0.173 4.173 16 C 0.044 3.956 17 N -0.339 5.339 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.002 3.998 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.234 0.766 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.317 6.749 -24.476 25.605 hybrid contribution -0.071 -1.123 0.691 1.320 sum -3.388 5.626 -23.785 24.675 Atomic orbital electron populations 1.22396 0.95017 1.03058 1.03308 1.22537 0.94433 0.94189 0.87463 1.21816 1.02271 0.93317 1.02974 1.86448 1.79176 1.15270 1.37433 1.19021 0.91223 0.83343 0.92523 1.21272 1.08505 0.95725 0.98970 1.21104 0.95057 0.93239 0.98081 1.20997 1.02926 1.00429 0.94312 1.21268 0.95300 0.92068 0.97821 1.19473 1.08664 0.93450 0.95803 1.17968 0.78143 0.87130 0.82565 1.90804 1.55458 1.13329 1.80631 1.45957 1.62680 1.10921 1.17775 1.21420 0.98698 0.94940 0.84056 1.23780 1.01124 0.98145 0.94246 1.22350 0.90293 0.99359 0.83618 1.46052 1.31467 1.37099 1.19321 1.19041 1.12802 1.09612 0.93539 0.90272 1.24782 0.97229 0.99327 0.99177 1.69837 1.16118 1.30667 1.40204 0.86119 0.77790 0.79522 0.82448 1.21716 1.21611 1.20580 1.22481 0.96595 0.92342 0.88379 0.91127 0.91055 0.91900 0.91067 0.91580 0.90744 0.91132 0.84843 0.85508 0.85233 0.84694 0.76650 0.91967 0.91410 0.89252 0.95427 0.91221 0.93706 0.93632 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.18 37.16 0.34 -1.07 16 2 C 0.07 0.65 2.84 -26.73 -0.08 0.57 16 3 C -0.15 -1.21 9.56 37.16 0.36 -0.85 16 4 O -0.27 -3.72 7.87 -40.53 -0.32 -4.04 16 5 C 0.19 2.41 6.61 -38.69 -0.26 2.15 16 6 C -0.23 -2.18 8.24 -39.48 -0.33 -2.51 16 7 C -0.06 -0.47 10.03 -39.53 -0.40 -0.87 16 8 C -0.17 -1.51 10.02 -39.63 -0.40 -1.91 16 9 C -0.05 -0.49 9.53 -39.20 -0.37 -0.87 16 10 C -0.17 -2.31 5.89 -104.84 -0.62 -2.93 16 11 C 0.56 9.03 7.76 -12.47 -0.10 8.93 16 12 O -0.53 -10.30 15.16 -16.59 -0.25 -10.55 16 13 N -0.72 -10.74 5.51 -61.35 -0.34 -11.08 16 14 C 0.13 2.18 5.51 -4.04 -0.02 2.15 16 15 C -0.15 -2.79 3.93 -89.69 -0.35 -3.14 16 16 C 0.17 3.94 7.07 -2.84 -0.02 3.92 16 17 N -0.61 -15.89 3.70 -177.72 -0.66 -16.55 16 18 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16 19 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -27.43 11.44 55.49 0.64 -26.80 16 22 Si 0.91 22.27 29.56 -169.99 -5.02 17.24 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.13 2.64 8.51 -2.97 -0.03 2.61 16 27 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.50 6.94 -51.93 -0.36 0.14 16 30 H 0.07 0.54 6.30 -51.93 -0.33 0.21 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.13 0.99 5.44 -52.48 -0.29 0.70 16 35 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 1.22 6.41 -52.48 -0.34 0.89 16 38 H 0.40 5.07 6.50 -40.82 -0.27 4.80 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.22 7.88 -51.93 -0.41 0.81 16 41 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 43 H 0.07 1.76 7.22 -51.93 -0.37 1.39 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -34.98 375.55 -9.78 -44.76 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.96 Total: 2.00 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.52 Total: -0.63 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.36 Total: -54.43 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.57 Total: -14.60 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.98 -9.78 -44.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032141804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.283 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds