Wall clock time and date at job start Tue Mar 31 2020 14:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47168 * 2 1 4 4 O 1.21277 * 119.99878 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99919 * 179.97438 * 3 2 1 6 6 C 1.46494 * 119.99888 * 359.97438 * 5 3 2 7 7 C 1.46500 * 119.99908 * 179.97438 * 5 3 2 8 8 C 1.53933 * 113.82536 * 141.32402 * 7 5 3 9 9 N 1.47962 * 86.17960 * 90.65202 * 8 7 5 10 10 C 1.46905 * 110.99863 * 137.58087 * 9 8 7 11 11 C 1.50697 * 109.47006 * 90.63937 * 10 9 8 12 12 C 1.38297 * 119.93146 * 269.72174 * 11 10 9 13 13 C 1.38098 * 120.06921 * 179.72603 * 12 11 10 14 14 C 1.38882 * 119.92830 * 0.52974 * 13 12 11 15 15 O 1.35756 * 120.06760 * 179.72635 * 14 13 12 16 16 C 1.34829 * 117.00239 * 174.48835 * 15 14 13 17 17 H 1.08008 * 119.99704 * 5.05391 * 16 15 14 18 18 C 1.38651 * 120.00337 * 185.05390 * 16 15 14 19 19 N 1.31553 * 119.99854 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99962 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46771 * 60.00378 * 20 18 16 22 22 H 1.48498 * 109.46953 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47476 * 300.00506 * 20 18 16 24 24 C 1.38877 * 119.86196 * 359.74776 * 14 13 12 25 25 C 1.38094 * 119.93167 * 359.97438 * 24 14 13 26 26 C 1.47959 * 90.76072 * 24.68956 * 9 8 7 27 27 H 1.09001 * 109.46787 * 60.00348 * 1 2 3 28 28 H 1.09002 * 109.47160 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47626 * 300.00205 * 1 2 3 30 30 H 1.09003 * 109.47188 * 239.99706 * 2 1 3 31 31 H 1.09005 * 109.47115 * 120.00017 * 2 1 3 32 32 H 1.09004 * 109.47322 * 269.99898 * 6 5 3 33 33 H 1.09001 * 109.47394 * 29.99870 * 6 5 3 34 34 H 1.09005 * 109.47351 * 149.99945 * 6 5 3 35 35 H 1.09004 * 112.93474 * 9.66965 * 7 5 3 36 36 H 1.09002 * 113.75647 * 204.96977 * 8 7 5 37 37 H 1.08995 * 113.76437 * 336.33541 * 8 7 5 38 38 H 1.08996 * 109.46822 * 210.63981 * 10 9 8 39 39 H 1.08999 * 109.47338 * 330.63758 * 10 9 8 40 40 H 1.08000 * 119.96285 * 359.97438 * 12 11 10 41 41 H 1.08001 * 120.03698 * 180.27543 * 13 12 11 42 42 H 0.96998 * 120.00279 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.03252 * 179.97438 * 24 14 13 44 44 H 1.07998 * 119.96444 * 180.02562 * 25 24 14 45 45 H 1.09003 * 113.75092 * 220.99199 * 26 9 8 46 46 H 1.09002 * 113.76023 * 89.63318 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3094 0.5535 0.0017 7 6 3.8458 3.0483 0.0000 8 6 5.0891 3.2686 0.8804 9 7 5.8799 2.9625 -0.3321 10 6 7.0180 3.8821 -0.4643 11 6 8.2203 3.2963 0.2301 12 6 8.4519 3.5777 1.5641 13 6 9.5497 3.0379 2.2048 14 6 10.4277 2.2205 1.5050 15 8 11.5109 1.6928 2.1305 16 6 12.2582 0.8182 1.4273 17 1 12.0327 0.6286 0.3881 18 6 13.3162 0.1623 2.0379 19 7 13.5905 0.3930 3.3037 20 14 14.3511 -1.0498 1.0637 21 1 14.9780 -0.3520 -0.0876 22 1 15.4114 -1.6108 1.9390 23 1 13.4869 -2.1497 0.5649 24 6 10.1956 1.9444 0.1639 25 6 9.0928 2.4826 -0.4695 26 6 4.7550 3.3835 -1.1961 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.5450 0.2780 1.0296 33 1 3.8693 -0.3013 -0.5119 34 1 5.2222 0.8553 -0.5119 35 1 3.0543 3.7787 0.1677 36 1 5.2024 4.2943 1.2314 37 1 5.2007 2.5311 1.6752 38 1 7.2445 4.0302 -1.5201 39 1 6.7661 4.8398 -0.0088 40 1 7.7712 4.2172 2.1065 41 1 9.7276 3.2545 3.2478 42 1 14.3309 -0.0656 3.7308 43 1 10.8768 1.3094 -0.3831 44 1 8.9115 2.2679 -1.5123 45 1 4.5997 2.7377 -2.0603 46 1 4.7707 4.4428 -1.4525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042385636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:41 Heat of formation + Delta-G solvation = 5.112375 kcal Electronic energy + Delta-G solvation = -26078.092638 eV Core-core repulsion = 22355.968696 eV Total energy + Delta-G solvation = -3722.123942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92970 -39.32569 -38.77729 -36.59501 -34.96817 -33.04978 -32.37661 -31.08046 -30.16792 -27.98308 -26.87563 -26.21729 -25.51938 -24.77111 -23.15353 -21.95882 -20.47845 -20.39060 -18.75138 -17.98398 -17.57272 -16.95104 -16.45431 -16.21177 -15.59116 -15.20962 -14.96410 -14.53755 -14.33984 -14.15285 -13.87519 -13.60125 -13.41833 -13.20810 -12.99740 -12.72670 -12.68483 -12.57144 -12.40448 -12.26857 -11.88846 -11.78790 -11.64480 -11.51672 -11.40039 -11.19466 -11.09367 -10.75895 -10.61693 -10.53108 -10.44011 -9.97012 -9.34175 -8.89052 -8.84312 -8.75171 -8.17961 -7.18255 -6.45890 -4.04830 2.21555 2.28321 2.40058 2.73474 3.12053 3.12893 3.15948 3.82088 3.95759 4.29143 4.37087 4.53011 4.75834 4.78639 4.80007 5.00736 5.03149 5.06462 5.11573 5.22455 5.29172 5.30819 5.40703 5.42423 5.46585 5.52720 5.59878 5.66394 5.69374 5.70543 5.77340 5.85370 5.90882 5.94514 6.15799 6.24882 6.38907 6.44303 6.69011 6.90017 6.91966 7.06699 7.21340 7.23896 7.39743 7.43837 7.82171 7.96676 7.99093 8.99699 9.70029 10.72098 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.002444 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.914467 B =11455.096627 C =12203.477185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.547 6.547 5 N -0.592 5.592 6 C 0.070 3.930 7 C 0.113 3.887 8 C -0.001 4.001 9 N -0.468 5.468 10 C 0.078 3.922 11 C -0.174 4.174 12 C -0.066 4.066 13 C -0.193 4.193 14 C 0.155 3.845 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.234 4.234 25 C -0.053 4.053 26 C -0.012 4.012 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.624 1.227 -8.035 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.301 3.699 4 O -0.424 6.424 5 N -0.324 5.324 6 C -0.073 4.073 7 C 0.008 3.992 8 C -0.131 4.131 9 N -0.190 5.190 10 C -0.050 4.050 11 C -0.176 4.176 12 C -0.085 4.085 13 C -0.213 4.213 14 C 0.101 3.899 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.254 4.254 25 C -0.072 4.072 26 C -0.142 4.142 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.443 1.013 -7.717 20.943 hybrid contribution 0.586 0.141 -0.405 0.726 sum -18.856 1.154 -8.122 20.564 Atomic orbital electron populations 1.21538 0.93118 1.01538 1.03259 1.21660 0.98404 0.93790 1.04382 1.20864 0.81599 0.91964 0.75428 1.90675 1.55021 1.46680 1.50069 1.47525 1.05854 1.06317 1.72713 1.22014 0.94692 0.88011 1.02536 1.22381 0.96150 0.84466 0.96200 1.24362 0.91572 1.01584 0.95590 1.68657 1.02586 1.44712 1.03065 1.21365 0.90518 0.93086 0.99981 1.18974 0.98037 1.05899 0.94645 1.20430 0.96041 0.98369 0.93649 1.20166 0.96758 1.04391 0.99957 1.19388 0.87348 0.92117 0.91045 1.83977 1.31613 1.52344 1.40246 1.21271 1.10577 1.19603 0.95342 0.89142 1.25284 0.97199 0.97937 0.96097 1.70025 1.28596 1.40829 1.10370 0.85790 0.79093 0.79757 0.78844 1.19524 1.20286 1.19489 1.21142 1.01259 1.07600 0.95363 1.20534 0.93347 0.95072 0.98216 1.24406 0.91467 1.00520 0.97785 0.92084 0.92087 0.92035 0.88855 0.88818 0.92570 0.91612 0.87880 0.87536 0.90235 0.88923 0.90976 0.93770 0.87689 0.86712 0.91976 0.85673 0.87726 0.89261 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.14 -1.07 4.97 -27.88 -0.14 -1.21 16 3 C 0.51 5.60 7.67 -10.98 -0.08 5.52 16 4 O -0.55 -7.85 15.46 5.56 0.09 -7.77 16 5 N -0.59 -6.02 3.09 -175.28 -0.54 -6.56 16 6 C 0.07 0.62 9.24 59.84 0.55 1.17 16 7 C 0.11 1.16 4.52 -69.64 -0.31 0.85 16 8 C 0.00 -0.01 7.20 -2.77 -0.02 -0.03 16 9 N -0.47 -5.32 4.29 -239.91 -1.03 -6.35 16 10 C 0.08 0.97 4.92 -4.97 -0.02 0.94 16 11 C -0.17 -2.83 5.44 -104.58 -0.57 -3.40 16 12 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16 13 C -0.19 -4.02 9.99 -39.39 -0.39 -4.42 16 14 C 0.15 3.70 6.65 -39.11 -0.26 3.44 16 15 O -0.18 -5.06 9.76 0.03 0.00 -5.06 16 16 C -0.39 -10.86 9.49 30.88 0.29 -10.57 16 17 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 20 Si 0.94 20.33 29.55 -169.99 -5.02 15.31 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C -0.23 -5.00 9.17 -39.40 -0.36 -5.36 16 25 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 26 C -0.01 -0.11 7.36 -2.77 -0.02 -0.13 16 27 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.09 0.55 7.40 -51.93 -0.38 0.16 16 31 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 34 H 0.10 1.08 6.07 -51.93 -0.32 0.76 16 35 H 0.11 1.18 7.22 -51.93 -0.37 0.80 16 36 H 0.08 0.76 7.48 -51.93 -0.39 0.38 16 37 H 0.09 1.07 7.89 -51.93 -0.41 0.66 16 38 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 39 H 0.04 0.50 7.32 -51.93 -0.38 0.12 16 40 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.11 2.33 8.06 -52.49 -0.42 1.90 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 44 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.65 7.92 -51.93 -0.41 0.24 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -32.05 375.67 -8.87 -40.92 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.92 Total: 4.04 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.86 Total: -15.76 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.81 Total: -37.34 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.05 -8.87 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042385636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.031 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds