Wall clock time and date at job start Tue Mar 31 2020 14:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46871 * 2 1 4 4 O 1.42898 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.35909 * 117.00082 * 180.02562 * 4 3 2 6 6 C 1.38857 * 119.98410 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.23898 * 179.97438 * 6 5 4 8 8 C 1.38012 * 120.20700 * 359.73590 * 7 6 5 9 9 C 1.39566 * 119.96258 * 0.51656 * 8 7 6 10 10 C 1.47855 * 120.11413 * 179.76491 * 9 8 7 11 11 O 1.21550 * 120.00068 * 201.92942 * 10 9 8 12 12 N 1.34777 * 120.00478 * 21.93131 * 10 9 8 13 13 C 1.46502 * 119.99559 * 4.82566 * 12 10 9 14 14 C 1.46496 * 120.00444 * 184.82608 * 12 10 9 15 15 C 1.53497 * 114.20766 * 240.00007 * 14 12 10 16 16 N 1.47070 * 87.98754 * 220.14621 * 15 14 12 17 17 C 1.36928 * 136.05828 * 207.08298 * 16 15 14 18 18 H 1.08002 * 120.00581 * 6.94786 * 17 16 15 19 19 C 1.38809 * 120.00032 * 186.94462 * 17 16 15 20 20 N 1.31625 * 120.00071 * 6.68441 * 19 17 16 21 21 Si 1.86800 * 120.00145 * 186.68211 * 19 17 16 22 22 H 1.48502 * 109.47251 * 265.01513 * 21 19 17 23 23 H 1.48497 * 109.47048 * 25.02019 * 21 19 17 24 24 H 1.48506 * 109.46925 * 145.01695 * 21 19 17 25 25 C 1.47067 * 87.88118 * 27.34017 * 16 15 14 26 26 C 1.38456 * 119.98614 * 180.02562 * 5 4 3 27 27 H 1.08997 * 109.46865 * 300.00253 * 1 2 3 28 28 H 1.08993 * 109.46884 * 60.00069 * 1 2 3 29 29 H 1.08996 * 109.46929 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47208 * 240.00410 * 2 1 3 31 31 H 1.09002 * 109.47035 * 119.99787 * 2 1 3 32 32 H 1.09002 * 109.47126 * 60.00040 * 3 2 1 33 33 H 1.09002 * 109.47117 * 299.99737 * 3 2 1 34 34 H 1.08000 * 119.87800 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.89796 * 179.97438 * 7 6 5 36 36 H 1.07998 * 120.01914 * 180.25803 * 8 7 6 37 37 H 1.09003 * 109.46857 * 264.24645 * 13 12 10 38 38 H 1.08998 * 109.47355 * 24.24890 * 13 12 10 39 39 H 1.08996 * 109.47068 * 144.24765 * 13 12 10 40 40 H 1.09005 * 113.28188 * 13.06800 * 14 12 10 41 41 H 1.08994 * 113.46832 * 105.36411 * 15 14 12 42 42 H 1.09000 * 113.46933 * 334.92605 * 15 14 12 43 43 H 0.96997 * 120.00215 * 179.97438 * 20 19 17 44 44 H 1.09003 * 113.46664 * 87.44009 * 25 16 15 45 45 H 1.09001 * 113.46803 * 217.87242 * 25 16 15 46 46 H 1.07997 * 120.10369 * 0.03737 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0860 2.6535 0.0012 6 6 3.3294 3.8179 0.0018 7 6 3.9516 5.0524 0.0030 8 6 5.3291 5.1357 0.0091 9 6 6.0979 3.9709 0.0032 10 6 7.5740 4.0563 0.0045 11 8 8.2374 3.1187 -0.3934 12 7 8.1841 5.1738 0.4468 13 6 7.3908 6.2616 1.0243 14 6 9.6404 5.3006 0.3501 15 6 10.3465 5.4917 1.6995 16 7 11.2273 6.4685 1.0415 17 6 12.5019 6.9315 1.2313 18 1 13.1397 6.4698 1.9705 19 6 12.9742 7.9943 0.4736 20 7 12.1592 8.6417 -0.3321 21 14 14.7666 8.5058 0.5974 22 1 14.8995 9.6096 1.5820 23 1 15.5827 7.3468 1.0398 24 1 15.2423 8.9678 -0.7313 25 6 10.1343 6.7339 0.0940 26 6 5.4687 2.7257 0.0013 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.2510 3.7588 0.0013 35 1 3.3577 5.9545 0.0030 36 1 5.8120 6.1017 0.0142 37 1 7.1820 7.0064 0.2562 38 1 6.4520 5.8626 1.4082 39 1 7.9483 6.7254 1.8380 40 1 10.0970 4.5459 -0.2904 41 1 10.8692 4.6002 2.0460 42 1 9.7073 5.9305 2.4656 43 1 12.4892 9.3846 -0.8613 44 1 9.4391 7.5003 0.4368 45 1 10.4763 6.9008 -0.9274 46 1 6.0583 1.8208 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042826178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:30 Heat of formation + Delta-G solvation = 36.092369 kcal Electronic energy + Delta-G solvation = -25981.986363 eV Core-core repulsion = 22261.205814 eV Total energy + Delta-G solvation = -3720.780548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74101 -39.73434 -38.06259 -37.14692 -34.79766 -34.22878 -32.14341 -31.25504 -30.23861 -27.68645 -27.24702 -26.68060 -24.63372 -24.49892 -22.81526 -22.50033 -21.71867 -20.19659 -18.88014 -18.15152 -17.04158 -16.64877 -16.61781 -16.41154 -15.86603 -15.63176 -15.09677 -14.78306 -14.50454 -14.32941 -14.05707 -13.81218 -13.65319 -13.20467 -12.95703 -12.75139 -12.69466 -12.50274 -12.38144 -11.97857 -11.75776 -11.68907 -11.54376 -11.28940 -11.18515 -11.05576 -10.97998 -10.83525 -10.76642 -10.21954 -10.12568 -9.60875 -9.47439 -9.17371 -8.81864 -8.39312 -8.13636 -6.94385 -5.83647 -3.14914 0.75167 1.23030 2.75942 2.92378 3.27581 3.38650 3.43705 3.45926 3.73468 4.37521 4.42232 4.44221 4.50310 4.61846 4.73052 4.78872 4.92799 4.95075 4.97476 5.14789 5.23747 5.26463 5.31567 5.35339 5.38203 5.49442 5.49749 5.59662 5.67421 5.71277 5.77033 5.83135 5.99094 6.06176 6.09989 6.18380 6.23429 6.44622 6.45615 6.57277 6.75386 7.10281 7.15921 7.28988 7.45188 7.69938 7.90984 8.38848 8.98352 9.64642 10.57062 11.35272 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.044237 B = 0.002143 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.801910 B =13062.433509 C =13419.049853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.058 3.942 4 O -0.315 6.315 5 C 0.119 3.881 6 C -0.190 4.190 7 C -0.090 4.090 8 C -0.145 4.145 9 C -0.087 4.087 10 C 0.554 3.446 11 O -0.537 6.537 12 N -0.588 5.588 13 C 0.059 3.941 14 C 0.085 3.915 15 C 0.106 3.894 16 N -0.602 5.602 17 C -0.219 4.219 18 H 0.084 0.916 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.279 1.279 24 H -0.289 1.289 25 C 0.156 3.844 26 C -0.095 4.095 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.156 0.844 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.044 0.956 42 H 0.034 0.966 43 H 0.255 0.745 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.670 -10.367 1.314 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.229 6.229 5 C 0.074 3.926 6 C -0.209 4.209 7 C -0.108 4.108 8 C -0.163 4.163 9 C -0.090 4.090 10 C 0.342 3.658 11 O -0.415 6.415 12 N -0.319 5.319 13 C -0.083 4.083 14 C -0.018 4.018 15 C -0.022 4.022 16 N -0.328 5.328 17 C -0.346 4.346 18 H 0.102 0.898 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.204 1.204 24 H -0.215 1.215 25 C 0.030 3.970 26 C -0.115 4.115 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.138 0.862 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.083 0.917 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.895 -10.823 1.050 27.166 hybrid contribution 0.584 0.767 0.142 0.975 sum -24.310 -10.057 1.192 26.335 Atomic orbital electron populations 1.21691 0.94229 1.02586 1.02195 1.21493 0.96004 0.94832 1.03902 1.22885 0.78498 0.98913 1.01394 1.86076 1.21207 1.26784 1.88799 1.18788 0.91906 0.84265 0.97634 1.21402 1.00045 0.92487 1.06993 1.20928 0.94417 0.97076 0.98392 1.22255 0.94078 0.99479 1.00469 1.19780 0.93427 0.93367 1.02405 1.18264 0.86864 0.82565 0.78146 1.90765 1.66150 1.36787 1.47834 1.47761 1.08082 1.16472 1.59588 1.22512 0.96530 0.90236 0.99055 1.23841 0.76332 1.01670 0.99975 1.22816 0.91803 0.93538 0.94021 1.45337 1.09612 1.46121 1.31735 1.18924 0.85387 1.11552 1.18747 0.89849 1.24850 0.98467 0.97183 0.99802 1.69848 1.33721 1.23045 1.29873 0.86059 0.84012 0.78379 0.77059 1.21557 1.20400 1.21516 1.22394 0.88227 0.89872 0.96553 1.20449 0.91226 0.98217 1.01597 0.92364 0.92352 0.91686 0.90715 0.90727 0.92013 0.92002 0.85400 0.85141 0.82693 0.91696 0.89585 0.90550 0.86209 0.93727 0.94829 0.93528 0.94681 0.91742 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.12 -0.74 6.30 -26.73 -0.17 -0.90 16 3 C 0.06 0.42 4.74 37.16 0.18 0.59 16 4 O -0.31 -3.43 10.13 -19.45 -0.20 -3.63 16 5 C 0.12 1.38 6.68 -39.27 -0.26 1.12 16 6 C -0.19 -1.79 9.03 -39.35 -0.36 -2.14 16 7 C -0.09 -0.82 10.03 -39.66 -0.40 -1.22 16 8 C -0.14 -1.59 7.56 -39.17 -0.30 -1.89 16 9 C -0.09 -1.20 5.57 -104.99 -0.58 -1.79 16 10 C 0.55 9.52 7.52 -12.32 -0.09 9.43 16 11 O -0.54 -11.10 16.09 5.32 0.09 -11.02 16 12 N -0.59 -9.80 3.12 -174.66 -0.54 -10.35 16 13 C 0.06 0.76 7.23 59.85 0.43 1.19 16 14 C 0.09 1.72 4.55 -67.68 -0.31 1.42 16 15 C 0.11 2.25 8.26 -8.51 -0.07 2.18 16 16 N -0.60 -15.63 3.76 -184.63 -0.69 -16.32 16 17 C -0.22 -6.18 10.73 -15.06 -0.16 -6.34 16 18 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -27.16 11.83 55.49 0.66 -26.50 16 21 Si 0.92 22.11 29.56 -169.99 -5.02 17.09 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.16 3.64 6.67 -8.38 -0.06 3.59 16 26 C -0.10 -1.30 9.53 -39.02 -0.37 -1.67 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 33 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 34 H 0.13 0.87 6.28 -52.49 -0.33 0.54 16 35 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.16 1.51 4.15 -52.49 -0.22 1.29 16 37 H 0.06 0.75 7.18 -51.93 -0.37 0.38 16 38 H 0.09 0.90 4.93 -51.93 -0.26 0.64 16 39 H 0.08 1.04 6.44 -51.93 -0.33 0.70 16 40 H 0.12 2.62 7.33 -51.93 -0.38 2.24 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.03 0.68 6.90 -51.93 -0.36 0.32 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.04 0.80 6.69 -51.93 -0.35 0.45 16 45 H 0.06 1.67 7.60 -51.93 -0.39 1.28 16 46 H 0.14 2.02 7.81 -52.49 -0.41 1.61 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -33.72 369.32 -9.10 -42.82 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.70 Total: -0.71 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.24 Total: 3.05 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.58 Total: -53.17 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.11 Total: -14.65 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.72 -9.10 -42.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042826178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.912 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds