Wall clock time and date at job start Tue Mar 31 2020 14:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47207 * 2 1 4 4 O 1.21282 * 120.00106 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00159 * 179.97438 * 3 2 1 6 6 C 1.47081 * 120.87956 * 359.72298 * 5 3 2 7 7 C 1.53695 * 108.27617 * 128.75309 * 6 5 3 8 8 N 1.46894 * 109.25693 * 54.08228 * 7 6 5 9 9 C 1.46903 * 111.00220 * 172.60431 * 8 7 6 10 10 C 1.50692 * 109.47363 * 294.30790 * 9 8 7 11 11 C 1.38305 * 119.93148 * 269.72606 * 10 9 8 12 12 C 1.38098 * 120.07277 * 179.72398 * 11 10 9 13 13 C 1.38875 * 119.92712 * 0.54637 * 12 11 10 14 14 O 1.35752 * 120.06937 * 179.74783 * 13 12 11 15 15 C 1.34827 * 117.00309 * 174.43914 * 14 13 12 16 16 H 1.08004 * 120.00069 * 5.05722 * 15 14 13 17 17 C 1.38658 * 120.00118 * 185.05425 * 15 14 13 18 18 N 1.31551 * 120.00039 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99875 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47099 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46963 * 120.00199 * 19 17 15 22 22 H 1.48503 * 109.46891 * 240.00411 * 19 17 15 23 23 C 1.38881 * 119.86759 * 359.72257 * 13 12 11 24 24 C 1.38105 * 119.92605 * 0.02562 * 23 13 12 25 25 C 1.46898 * 111.27141 * 296.75627 * 8 7 6 26 26 C 1.47079 * 120.88365 * 180.02562 * 5 3 2 27 27 H 1.09000 * 109.46952 * 299.99968 * 1 2 3 28 28 H 1.09001 * 109.47018 * 60.00048 * 1 2 3 29 29 H 1.09004 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47018 * 119.99952 * 2 1 3 31 31 H 1.08996 * 109.47203 * 239.99583 * 2 1 3 32 32 H 1.08998 * 109.63068 * 248.52130 * 6 5 3 33 33 H 1.09004 * 109.62662 * 9.10367 * 6 5 3 34 34 H 1.09004 * 109.64902 * 294.07903 * 7 6 5 35 35 H 1.08997 * 109.41956 * 173.94939 * 7 6 5 36 36 H 1.09006 * 109.46628 * 54.30732 * 9 8 7 37 37 H 1.08995 * 109.47536 * 174.29958 * 9 8 7 38 38 H 1.08000 * 119.95796 * 359.97438 * 11 10 9 39 39 H 1.08004 * 120.03751 * 180.26557 * 12 11 10 40 40 H 0.96998 * 120.00460 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.04112 * 179.97438 * 23 13 12 42 42 H 1.07994 * 119.96437 * 180.02562 * 24 23 13 43 43 H 1.08999 * 109.48998 * 303.14652 * 25 8 7 44 44 H 1.09001 * 109.49514 * 183.06280 * 25 8 7 45 45 H 1.09007 * 109.62631 * 350.89341 * 26 5 3 46 46 H 1.08993 * 109.63057 * 111.47857 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3303 0.5639 0.0072 7 6 5.3357 0.8011 -1.1308 8 7 5.9177 2.1426 -0.9913 9 6 7.0097 2.3454 -1.9528 10 6 8.1490 1.4160 -1.6224 11 6 9.1484 1.8288 -0.7601 12 6 10.1909 0.9775 -0.4508 13 6 10.2410 -0.2902 -1.0156 14 8 11.2671 -1.1276 -0.7176 15 6 11.1957 -2.3818 -1.2072 16 1 10.3912 -2.6564 -1.8734 17 6 12.1552 -3.3190 -0.8556 18 7 13.1349 -2.9846 -0.0438 19 14 12.0566 -5.0564 -1.5345 20 1 10.8688 -5.1761 -2.4177 21 1 13.2854 -5.3539 -2.3135 22 1 11.9368 -6.0206 -0.4115 23 6 9.2389 -0.6999 -1.8855 24 6 8.1963 0.1543 -2.1868 25 6 4.8926 3.1854 -1.1313 26 6 3.8690 3.0460 0.0011 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 4.8532 0.5426 0.9633 33 1 3.8123 -0.3820 -0.1513 34 1 4.8269 0.7235 -2.0916 35 1 6.1273 0.0537 -1.0766 36 1 6.6502 2.1357 -2.9603 37 1 7.3552 3.3776 -1.8980 38 1 9.1114 2.8166 -0.3250 39 1 10.9688 1.2989 0.2260 40 1 13.8059 -3.6402 0.2025 41 1 9.2753 -1.6850 -2.3267 42 1 7.4165 -0.1638 -2.8628 43 1 4.3899 3.0746 -2.0921 44 1 5.3629 4.1673 -1.0774 45 1 3.0459 3.7419 -0.1615 46 1 4.3485 3.2583 0.9566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099546877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:05 Heat of formation + Delta-G solvation = -30.115896 kcal Electronic energy + Delta-G solvation = -26292.384590 eV Core-core repulsion = 22568.733036 eV Total energy + Delta-G solvation = -3723.651554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.43180 -39.22520 -38.19529 -36.56970 -34.62952 -33.19945 -32.34095 -31.26045 -30.24641 -30.19325 -27.54007 -25.60243 -24.83032 -24.14513 -23.22359 -21.96716 -21.12200 -20.38744 -18.98735 -18.01893 -17.52667 -16.98340 -16.12045 -16.01220 -15.35444 -15.21374 -15.12639 -14.64384 -14.50650 -14.18884 -14.09506 -13.89340 -13.60173 -13.44587 -12.97008 -12.84665 -12.72766 -12.56937 -12.15652 -12.06773 -11.90099 -11.65600 -11.58186 -11.50378 -11.41254 -11.34422 -11.22106 -10.78788 -10.64609 -10.58488 -10.45091 -9.95903 -9.37188 -8.95694 -8.87730 -8.33875 -8.19906 -7.22037 -6.48977 -4.07898 2.17033 2.22271 2.42826 2.76157 3.08727 3.10396 3.15915 3.85468 3.93055 4.25387 4.55094 4.69786 4.75732 4.79328 4.82449 4.94621 5.02288 5.06487 5.10979 5.16992 5.25344 5.32495 5.38310 5.41963 5.51710 5.56238 5.62898 5.65693 5.67107 5.71302 5.78858 5.85642 5.87858 5.93236 6.17337 6.26012 6.38192 6.66284 6.84271 6.91934 6.95362 7.07382 7.20769 7.23277 7.34775 7.40504 7.78558 7.95942 7.96226 8.96739 9.66954 10.69071 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.002659 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.279037 B =10526.518536 C =11722.503073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.513 3.487 4 O -0.548 6.548 5 N -0.615 5.615 6 C 0.111 3.889 7 C 0.038 3.962 8 N -0.531 5.531 9 C 0.115 3.885 10 C -0.181 4.181 11 C -0.051 4.051 12 C -0.194 4.194 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.234 4.234 24 C -0.067 4.067 25 C 0.041 3.959 26 C 0.116 3.884 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.034 0.966 35 H 0.101 0.899 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.034 0.966 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.398 6.511 -1.771 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.302 3.698 4 O -0.426 6.426 5 N -0.349 5.349 6 C -0.012 4.012 7 C -0.091 4.091 8 N -0.256 5.256 9 C -0.012 4.012 10 C -0.182 4.182 11 C -0.070 4.070 12 C -0.213 4.213 13 C 0.102 3.898 14 O -0.081 6.081 15 C -0.468 4.468 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.253 4.253 24 C -0.086 4.086 25 C -0.087 4.087 26 C -0.006 4.006 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.119 0.881 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.120 0.880 43 H 0.052 0.948 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.211 6.956 -1.073 19.523 hybrid contribution -0.159 -1.074 -1.194 1.614 sum -18.369 5.882 -2.267 19.421 Atomic orbital electron populations 1.21531 0.93034 1.01570 1.03242 1.21669 0.98556 0.93941 1.04339 1.20809 0.81564 0.91941 0.75494 1.90674 1.54843 1.46686 1.50393 1.48274 1.05576 1.07790 1.73220 1.22028 0.89851 0.89140 1.00213 1.22631 0.97522 0.92632 0.96304 1.61989 1.09598 1.01755 1.52286 1.20791 0.89416 0.98792 0.92177 1.19035 0.98028 0.95954 1.05187 1.20447 0.92839 0.98002 0.95726 1.20226 1.01625 0.93491 1.05962 1.19403 0.87455 0.90833 0.92097 1.83982 1.36656 1.21691 1.65761 1.21363 1.12940 0.84112 1.28367 0.89040 1.25292 0.95107 0.99701 0.96425 1.70042 1.12441 1.35169 1.32001 0.85655 0.78648 0.80515 0.78649 1.19116 1.20144 1.20117 1.21114 0.97540 1.01709 1.04977 1.20578 0.96852 0.93109 0.98037 1.22481 0.92807 0.96338 0.97113 1.21701 0.96673 0.83125 0.99132 0.92033 0.92095 0.92048 0.88800 0.88917 0.90066 0.89398 0.94809 0.88117 0.94976 0.90639 0.87087 0.86579 0.92034 0.85656 0.88009 0.94766 0.89543 0.88943 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.20 37.16 0.34 -0.73 16 2 C -0.15 -1.14 4.78 -27.89 -0.13 -1.27 16 3 C 0.51 5.80 7.71 -10.99 -0.08 5.71 16 4 O -0.55 -8.05 15.43 5.56 0.09 -7.96 16 5 N -0.61 -6.48 3.00 -172.16 -0.52 -7.00 16 6 C 0.11 1.04 6.53 -3.36 -0.02 1.02 16 7 C 0.04 0.42 5.35 -3.47 -0.02 0.40 16 8 N -0.53 -6.21 4.62 -235.45 -1.09 -7.30 16 9 C 0.11 1.43 5.12 -4.98 -0.03 1.40 16 10 C -0.18 -2.83 4.89 -104.58 -0.51 -3.35 16 11 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 12 C -0.19 -3.94 9.99 -39.40 -0.39 -4.33 16 13 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 14 O -0.18 -4.95 9.76 0.05 0.00 -4.95 16 15 C -0.39 -10.66 9.49 30.89 0.29 -10.36 16 16 H 0.09 2.30 5.20 -52.48 -0.27 2.02 16 17 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -24.86 13.67 55.48 0.76 -24.10 16 19 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 23 C -0.23 -4.80 9.17 -39.39 -0.36 -5.16 16 24 C -0.07 -1.13 7.85 -39.61 -0.31 -1.44 16 25 C 0.04 0.42 5.62 -3.68 -0.02 0.39 16 26 C 0.12 1.20 6.60 -3.58 -0.02 1.18 16 27 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.60 7.99 -51.93 -0.41 0.18 16 31 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.63 6.02 -51.93 -0.31 0.32 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 1.26 5.65 -51.93 -0.29 0.96 16 36 H 0.03 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 42 H 0.10 1.46 7.93 -52.49 -0.42 1.05 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.76 7.99 -51.93 -0.41 0.34 16 45 H 0.09 1.01 7.06 -51.92 -0.37 0.64 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -31.70 369.96 -9.17 -40.87 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.95 Total: 3.33 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.01 Total: -13.47 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.85 Total: -38.40 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.70 -9.17 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099546877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.751 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds