Wall clock time and date at job start Tue Mar 31 2020 14:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47207 * 2 1 4 4 O 1.21282 * 120.00106 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00159 * 179.97438 * 3 2 1 6 6 C 1.47081 * 120.87956 * 359.72298 * 5 3 2 7 7 C 1.53695 * 108.27617 * 128.75309 * 6 5 3 8 8 N 1.46894 * 109.25693 * 54.08228 * 7 6 5 9 9 C 1.46903 * 111.00220 * 172.60431 * 8 7 6 10 10 C 1.50692 * 109.47363 * 294.30790 * 9 8 7 11 11 C 1.38305 * 119.93148 * 269.72606 * 10 9 8 12 12 C 1.38098 * 120.07277 * 179.72398 * 11 10 9 13 13 C 1.38875 * 119.92712 * 0.54637 * 12 11 10 14 14 O 1.35752 * 120.06937 * 179.74783 * 13 12 11 15 15 C 1.34827 * 117.00309 * 174.43914 * 14 13 12 16 16 H 1.08004 * 120.00069 * 5.05722 * 15 14 13 17 17 C 1.38658 * 120.00118 * 185.05425 * 15 14 13 18 18 N 1.31551 * 120.00039 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99875 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47099 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46963 * 120.00199 * 19 17 15 22 22 H 1.48503 * 109.46891 * 240.00411 * 19 17 15 23 23 C 1.38881 * 119.86759 * 359.72257 * 13 12 11 24 24 C 1.38105 * 119.92605 * 0.02562 * 23 13 12 25 25 C 1.46898 * 111.27141 * 296.75627 * 8 7 6 26 26 C 1.47079 * 120.88365 * 180.02562 * 5 3 2 27 27 H 1.09000 * 109.46952 * 299.99968 * 1 2 3 28 28 H 1.09001 * 109.47018 * 60.00048 * 1 2 3 29 29 H 1.09004 * 109.47208 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47018 * 119.99952 * 2 1 3 31 31 H 1.08996 * 109.47203 * 239.99583 * 2 1 3 32 32 H 1.08998 * 109.63068 * 248.52130 * 6 5 3 33 33 H 1.09004 * 109.62662 * 9.10367 * 6 5 3 34 34 H 1.09004 * 109.64902 * 294.07903 * 7 6 5 35 35 H 1.08997 * 109.41956 * 173.94939 * 7 6 5 36 36 H 1.09006 * 109.46628 * 54.30732 * 9 8 7 37 37 H 1.08995 * 109.47536 * 174.29958 * 9 8 7 38 38 H 1.08000 * 119.95796 * 359.97438 * 11 10 9 39 39 H 1.08004 * 120.03751 * 180.26557 * 12 11 10 40 40 H 0.96998 * 120.00460 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.04112 * 179.97438 * 23 13 12 42 42 H 1.07994 * 119.96437 * 180.02562 * 24 23 13 43 43 H 1.08999 * 109.48998 * 303.14652 * 25 8 7 44 44 H 1.09001 * 109.49514 * 183.06280 * 25 8 7 45 45 H 1.09007 * 109.62631 * 350.89341 * 26 5 3 46 46 H 1.08993 * 109.63057 * 111.47857 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3303 0.5639 0.0072 7 6 5.3357 0.8011 -1.1308 8 7 5.9177 2.1426 -0.9913 9 6 7.0097 2.3454 -1.9528 10 6 8.1490 1.4160 -1.6224 11 6 9.1484 1.8288 -0.7601 12 6 10.1909 0.9775 -0.4508 13 6 10.2410 -0.2902 -1.0156 14 8 11.2671 -1.1276 -0.7176 15 6 11.1957 -2.3818 -1.2072 16 1 10.3912 -2.6564 -1.8734 17 6 12.1552 -3.3190 -0.8556 18 7 13.1349 -2.9846 -0.0438 19 14 12.0566 -5.0564 -1.5345 20 1 10.8688 -5.1761 -2.4177 21 1 13.2854 -5.3539 -2.3135 22 1 11.9368 -6.0206 -0.4115 23 6 9.2389 -0.6999 -1.8855 24 6 8.1963 0.1543 -2.1868 25 6 4.8926 3.1854 -1.1313 26 6 3.8690 3.0460 0.0011 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 4.8532 0.5426 0.9633 33 1 3.8123 -0.3820 -0.1513 34 1 4.8269 0.7235 -2.0916 35 1 6.1273 0.0537 -1.0766 36 1 6.6502 2.1357 -2.9603 37 1 7.3552 3.3776 -1.8980 38 1 9.1114 2.8166 -0.3250 39 1 10.9688 1.2989 0.2260 40 1 13.8059 -3.6402 0.2025 41 1 9.2753 -1.6850 -2.3267 42 1 7.4165 -0.1638 -2.8628 43 1 4.3899 3.0746 -2.0921 44 1 5.3629 4.1673 -1.0774 45 1 3.0459 3.7419 -0.1615 46 1 4.3485 3.2583 0.9566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099546877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:04 Heat of formation + Delta-G solvation = -50.491596 kcal Electronic energy + Delta-G solvation = -26293.268147 eV Core-core repulsion = 22568.733036 eV Total energy + Delta-G solvation = -3724.535111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.31603 -40.74770 -39.34738 -38.02891 -35.65432 -34.27501 -33.86593 -32.14515 -31.67843 -31.50034 -28.65697 -27.37772 -25.76227 -25.10139 -24.18850 -23.47411 -22.08399 -21.72066 -19.84242 -19.75912 -18.78579 -18.32761 -16.97985 -16.80198 -16.53162 -16.43323 -16.22751 -16.09038 -15.80831 -15.41755 -15.33411 -15.04318 -14.86588 -14.66195 -14.32612 -14.14876 -13.78069 -13.54081 -13.50714 -13.02845 -12.97615 -12.78697 -12.68920 -12.55267 -12.42492 -12.28595 -12.21506 -12.11194 -12.06572 -12.04852 -11.77022 -11.13120 -10.82808 -10.77776 -9.84125 -9.69815 -9.25223 -8.85172 -8.44852 -6.12631 0.64499 0.71113 1.36891 1.44847 1.54923 1.59328 1.97657 2.19309 2.74409 3.02935 3.31694 3.52801 3.56819 3.89260 3.92028 4.05105 4.07063 4.17311 4.21478 4.24336 4.26375 4.31948 4.37696 4.48147 4.53577 4.65438 4.71284 4.75222 4.77857 4.83899 4.87779 4.90812 4.98219 5.03612 5.07315 5.12950 5.18625 5.30732 5.34589 5.46585 5.61800 5.75411 5.82972 6.03162 6.05951 6.13239 6.27939 6.39997 7.00368 7.13021 7.82538 8.78775 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.002659 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.279037 B =10526.518536 C =11722.503073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.142 4.142 3 C 0.506 3.494 4 O -0.589 6.589 5 N -0.615 5.615 6 C 0.113 3.887 7 C 0.037 3.963 8 N -0.541 5.541 9 C 0.117 3.883 10 C -0.151 4.151 11 C -0.046 4.046 12 C -0.206 4.206 13 C 0.114 3.886 14 O -0.235 6.235 15 C -0.409 4.409 16 H 0.103 0.897 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.249 1.249 21 H -0.271 1.271 22 H -0.269 1.269 23 C -0.240 4.240 24 C -0.059 4.059 25 C 0.050 3.950 26 C 0.115 3.885 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.109 0.891 40 H 0.272 0.728 41 H 0.117 0.883 42 H 0.135 0.865 43 H 0.033 0.967 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.036 6.648 -3.111 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.181 4.181 3 C 0.297 3.703 4 O -0.470 6.470 5 N -0.348 5.348 6 C -0.010 4.010 7 C -0.092 4.092 8 N -0.266 5.266 9 C -0.009 4.009 10 C -0.153 4.153 11 C -0.064 4.064 12 C -0.226 4.226 13 C 0.064 3.936 14 O -0.142 6.142 15 C -0.486 4.486 16 H 0.120 0.880 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.837 3.163 20 H -0.172 1.172 21 H -0.196 1.196 22 H -0.194 1.194 23 C -0.260 4.260 24 C -0.078 4.078 25 C -0.079 4.079 26 C -0.008 4.008 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.161 0.839 39 H 0.127 0.873 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.153 0.847 43 H 0.052 0.948 44 H 0.121 0.879 45 H 0.102 0.898 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.885 7.128 -2.428 22.201 hybrid contribution 0.404 -0.795 -0.795 1.195 sum -20.481 6.333 -3.224 21.679 Atomic orbital electron populations 1.21527 0.93298 1.02607 1.01863 1.21745 0.98312 0.91844 1.06194 1.21460 0.81391 0.92977 0.74502 1.90656 1.55816 1.48215 1.52357 1.48378 1.05692 1.08124 1.72577 1.22094 0.89541 0.89886 0.99435 1.22634 0.97409 0.91857 0.97259 1.61922 1.10098 1.02537 1.52044 1.20797 0.88414 0.98729 0.92987 1.19511 0.97983 0.95658 1.02104 1.20815 0.91588 0.98686 0.95319 1.20455 1.02774 0.93231 1.06112 1.19946 0.88122 0.91538 0.94001 1.83947 1.39395 1.22544 1.68267 1.21847 1.13472 0.84607 1.28639 0.87991 1.26578 0.94483 1.04386 0.96725 1.70190 1.14074 1.36979 1.34856 0.84538 0.79270 0.74268 0.78201 1.17245 1.19591 1.19441 1.21198 0.98010 1.02150 1.04596 1.20895 0.96136 0.92833 0.97910 1.22447 0.92189 0.96508 0.96711 1.21694 0.96504 0.83213 0.99410 0.93469 0.93482 0.89731 0.86822 0.86845 0.90568 0.86772 0.94066 0.89488 0.93619 0.88746 0.83855 0.87315 0.91935 0.86494 0.84675 0.94840 0.87899 0.89779 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.20 71.98 0.66 -1.22 16 2 C -0.14 -1.81 4.78 29.85 0.14 -1.66 16 3 C 0.51 10.45 7.71 87.65 0.68 11.12 16 4 O -0.59 -16.89 15.43 -3.04 -0.05 -16.94 16 5 N -0.61 -11.40 3.00 -816.97 -2.45 -13.85 16 6 C 0.11 1.76 6.53 86.50 0.57 2.32 16 7 C 0.04 0.67 5.35 86.54 0.46 1.14 16 8 N -0.54 -10.46 4.62 -898.82 -4.15 -14.61 16 9 C 0.12 2.36 5.12 85.55 0.44 2.80 16 10 C -0.15 -4.22 4.89 -19.84 -0.10 -4.32 16 11 C -0.05 -1.43 9.69 22.25 0.22 -1.22 16 12 C -0.21 -8.48 9.99 22.39 0.22 -8.26 16 13 C 0.11 5.49 6.65 22.58 0.15 5.64 16 14 O -0.23 -13.89 9.76 -22.74 -0.22 -14.11 16 15 C -0.41 -23.33 9.49 67.92 0.64 -22.69 16 16 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 17 C -0.02 -1.37 5.49 84.84 0.47 -0.91 16 18 N -0.92 -56.16 13.67 21.61 0.30 -55.86 16 19 Si 1.02 41.95 29.55 68.60 2.03 43.97 16 20 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 23 C -0.24 -9.82 9.17 22.39 0.21 -9.61 16 24 C -0.06 -1.83 7.85 22.25 0.17 -1.65 16 25 C 0.05 0.82 5.62 86.40 0.49 1.30 16 26 C 0.11 2.11 6.60 86.36 0.57 2.68 16 27 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 28 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 29 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.11 1.03 7.99 -2.39 -0.02 1.01 16 31 H 0.11 1.01 7.67 -2.39 -0.02 0.99 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.11 1.17 6.02 -2.39 -0.01 1.16 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 1.86 5.65 -2.39 -0.01 1.84 16 36 H 0.05 0.86 8.07 -2.38 -0.02 0.84 16 37 H 0.09 1.64 7.91 -2.39 -0.02 1.62 16 38 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.12 4.90 5.64 -2.91 -0.02 4.88 16 42 H 0.14 3.31 7.93 -2.91 -0.02 3.28 16 43 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.10 1.38 7.99 -2.39 -0.02 1.36 16 45 H 0.08 1.72 7.06 -2.38 -0.02 1.70 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -74.49 369.96 2.41 -72.08 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.97 Total: 23.83 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 5.99 Total: -24.52 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -6.31 Total: -84.32 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.27 Total: -31.05 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -74.49 2.41 -72.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099546877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.592 kcal (2) G-P(sol) polarization free energy of solvation -74.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds