Wall clock time and date at job start Tue Mar 31 2020 14:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.42900 * 109.46976 * 179.97438 * 3 2 1 5 5 C 1.35648 * 116.99957 * 179.97438 * 4 3 2 6 6 C 1.39348 * 120.53828 * 0.02562 * 5 4 3 7 7 C 1.38298 * 118.43982 * 179.97438 * 6 5 4 8 8 C 1.38771 * 119.44371 * 359.97438 * 7 6 5 9 9 N 1.31374 * 121.06994 * 0.02757 * 8 7 6 10 10 C 1.32860 * 121.69279 * 359.68032 * 9 8 7 11 11 C 1.47828 * 119.78317 * 180.31354 * 10 9 8 12 12 O 1.21558 * 119.99859 * 180.26516 * 11 10 9 13 13 N 1.34773 * 120.00156 * 0.26603 * 11 10 9 14 14 C 1.46494 * 120.00229 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.41669 * 324.85911 * 14 13 11 16 16 C 1.52963 * 109.41360 * 84.64956 * 14 13 11 17 17 C 1.53227 * 109.40744 * 183.70984 * 16 14 13 18 18 C 1.51270 * 108.53342 * 305.36588 * 17 16 14 19 19 C 1.37871 * 120.85358 * 231.32517 * 18 17 16 20 20 N 1.31520 * 120.00245 * 180.02562 * 19 18 17 21 21 Si 1.86797 * 120.00038 * 0.02814 * 19 18 17 22 22 H 1.48502 * 109.47476 * 89.99514 * 21 19 18 23 23 H 1.48498 * 109.47594 * 209.99592 * 21 19 18 24 24 H 1.48503 * 109.47027 * 329.99769 * 21 19 18 25 25 C 1.51272 * 118.29996 * 51.35181 * 18 17 16 26 26 C 1.52959 * 109.41908 * 205.00237 * 14 13 11 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.07994 * 120.77996 * 359.97438 * 6 5 4 35 35 H 1.07996 * 120.28107 * 179.97438 * 7 6 5 36 36 H 1.08007 * 119.46474 * 180.02562 * 8 7 6 37 37 H 0.97006 * 119.99876 * 0.02562 * 13 11 10 38 38 H 1.09005 * 109.47843 * 303.68305 * 16 14 13 39 39 H 1.08992 * 109.48481 * 63.72275 * 16 14 13 40 40 H 1.08995 * 109.62619 * 185.65799 * 17 16 14 41 41 H 1.09002 * 109.78695 * 65.17668 * 17 16 14 42 42 H 0.97001 * 119.99948 * 180.02562 * 20 19 18 43 43 H 1.09000 * 109.62958 * 188.93426 * 25 18 17 44 44 H 1.09001 * 109.62545 * 68.36108 * 25 18 17 45 45 H 1.09008 * 109.47592 * 296.27684 * 26 14 13 46 46 H 1.09000 * 109.48295 * 56.31519 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0848 2.6511 0.0001 6 6 3.3369 3.8269 -0.0003 7 6 4.0095 5.0353 -0.0003 8 6 5.3972 5.0437 0.0008 9 7 6.0820 3.9225 0.0013 10 6 5.4810 2.7376 0.0070 11 6 6.2931 1.5024 0.0142 12 8 5.7474 0.4162 0.0146 13 7 7.6386 1.5805 0.0204 14 6 8.4434 0.3565 0.0282 15 1 7.9372 -0.4063 0.6199 16 6 8.6172 -0.1468 -1.4058 17 6 9.3796 -1.4759 -1.3900 18 6 10.6768 -1.2772 -0.6377 19 6 11.8804 -1.6610 -1.1900 20 7 12.9982 -1.4809 -0.5208 21 14 11.9234 -2.4368 -2.8887 22 1 12.0750 -1.3739 -3.9147 23 1 13.0708 -3.3755 -2.9753 24 1 10.6586 -3.1776 -3.1267 25 6 10.6197 -0.6472 0.7364 26 6 9.8123 0.6518 0.6436 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 2.2575 3.7952 -0.0008 35 1 3.4595 5.9647 -0.0010 36 1 5.9228 5.9872 0.0013 37 1 8.0741 2.4473 0.0205 38 1 7.6376 -0.2951 -1.8602 39 1 9.1787 0.5875 -1.9832 40 1 9.5934 -1.7874 -2.4124 41 1 8.7809 -2.2388 -0.8924 42 1 13.8450 -1.7506 -0.9096 43 1 11.6302 -0.4264 1.0802 44 1 10.1343 -1.3309 1.4328 45 1 10.3455 1.3673 0.0175 46 1 9.6797 1.0696 1.6416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196936230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:14 Heat of formation + Delta-G solvation = -79.397751 kcal Electronic energy + Delta-G solvation = -26660.145315 eV Core-core repulsion = 22934.356739 eV Total energy + Delta-G solvation = -3725.788576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96916 -40.42256 -39.34706 -38.34130 -35.39191 -34.89664 -33.75795 -32.97937 -31.58717 -31.47124 -29.09901 -27.61969 -25.85389 -24.23101 -23.74819 -23.30768 -22.50174 -21.49185 -21.27601 -19.42708 -18.78384 -18.09323 -17.84414 -17.41262 -16.80592 -16.42290 -16.24742 -16.08727 -15.48061 -15.23857 -15.12033 -14.89188 -14.63630 -14.53987 -14.26372 -14.01729 -13.93317 -13.59567 -13.49098 -13.04154 -12.97482 -12.81021 -12.69718 -12.56401 -12.53582 -11.96174 -11.93386 -11.84390 -11.64356 -11.51650 -11.25774 -10.93579 -10.82791 -10.72678 -10.56547 -10.50259 -9.92118 -9.47330 -8.17854 -6.12090 -0.34817 0.23348 1.37617 1.40914 1.50231 1.80532 2.04476 2.18725 2.40764 2.84693 3.09379 3.24802 3.58780 3.70567 3.90056 3.94790 3.99553 4.05195 4.15185 4.19885 4.24438 4.47203 4.49574 4.51340 4.52129 4.68422 4.75317 4.83093 4.90272 4.94604 5.00968 5.05418 5.12286 5.13600 5.14888 5.19787 5.21759 5.30525 5.46978 5.52781 5.57329 5.68267 5.74852 5.80255 6.25066 6.34355 6.54527 6.86462 6.92631 7.29229 7.45947 8.92920 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.003106 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.225537 B = 9013.505321 C =10128.048875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.044 3.956 4 O -0.306 6.306 5 C 0.124 3.876 6 C -0.172 4.172 7 C -0.085 4.085 8 C 0.053 3.947 9 N -0.442 5.442 10 C 0.005 3.995 11 C 0.559 3.441 12 O -0.561 6.561 13 N -0.701 5.701 14 C 0.167 3.833 15 H 0.056 0.944 16 C -0.105 4.105 17 C -0.013 4.013 18 C -0.501 4.501 19 C 0.026 3.974 20 N -0.927 5.927 21 Si 0.940 3.060 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.260 1.260 25 C 0.010 3.990 26 C -0.100 4.100 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.178 0.822 35 H 0.191 0.809 36 H 0.198 0.802 37 H 0.412 0.588 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.033 0.967 41 H 0.013 0.987 42 H 0.264 0.736 43 H 0.036 0.964 44 H -0.002 1.002 45 H 0.056 0.944 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.592 16.339 0.550 30.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C -0.030 4.030 4 O -0.218 6.218 5 C 0.073 3.927 6 C -0.198 4.198 7 C -0.105 4.105 8 C -0.110 4.110 9 N -0.154 5.154 10 C -0.132 4.132 11 C 0.346 3.654 12 O -0.439 6.439 13 N -0.351 5.351 14 C 0.063 3.937 15 H 0.074 0.926 16 C -0.144 4.144 17 C -0.051 4.051 18 C -0.520 4.520 19 C -0.172 4.172 20 N -0.567 5.567 21 Si 0.766 3.234 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.184 1.184 25 C -0.028 4.028 26 C -0.138 4.138 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.195 0.805 35 H 0.209 0.791 36 H 0.215 0.785 37 H 0.249 0.751 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.016 0.984 45 H 0.075 0.925 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.791 15.267 0.549 29.120 hybrid contribution -0.070 -0.388 -0.698 0.802 sum -24.860 14.879 -0.149 28.973 Atomic orbital electron populations 1.21653 0.91812 1.03177 1.03132 1.21495 0.97707 0.94462 1.02693 1.23310 0.76749 0.99904 1.03069 1.86399 1.23112 1.25846 1.86395 1.20256 0.91997 0.86857 0.93588 1.22165 1.02497 0.90728 1.04416 1.22747 0.95199 0.99623 0.92905 1.23449 0.92760 0.96315 0.98430 1.67557 1.41033 0.97735 1.09031 1.20417 0.89283 0.92455 1.11007 1.18206 0.82608 0.88069 0.76550 1.90781 1.72387 1.29396 1.51325 1.46000 1.05373 1.10528 1.73193 1.20679 0.90929 0.85508 0.96631 0.92593 1.21781 0.97901 0.98800 0.95901 1.19702 0.95097 0.93731 0.96587 1.20569 0.90883 1.38536 1.02025 1.25555 0.94952 0.95949 1.00777 1.69954 0.98447 1.48795 1.39486 0.85816 0.77483 0.79075 0.81016 1.19638 1.21493 1.18441 1.19296 0.96020 0.92349 0.95128 1.21701 0.93747 0.99540 0.98818 0.91483 0.91250 0.91201 0.92276 0.92352 0.89899 0.89831 0.80453 0.79137 0.78487 0.75101 0.94476 0.92678 0.94838 0.96901 0.92640 0.94492 0.98388 0.92489 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.13 -2.24 6.30 30.60 0.19 -2.05 16 3 C 0.04 0.76 4.76 71.98 0.34 1.10 16 4 O -0.31 -8.79 8.20 -68.64 -0.56 -9.35 16 5 C 0.12 3.22 6.71 22.94 0.15 3.37 16 6 C -0.17 -2.55 9.13 22.55 0.21 -2.34 16 7 C -0.09 -0.90 10.10 22.41 0.23 -0.67 16 8 C 0.05 0.82 11.17 84.89 0.95 1.77 16 9 N -0.44 -11.27 9.54 -184.62 -1.76 -13.03 16 10 C 0.00 0.14 6.76 41.93 0.28 0.42 16 11 C 0.56 21.78 7.76 86.78 0.67 22.45 16 12 O -0.56 -25.65 14.80 17.09 0.25 -25.40 16 13 N -0.70 -26.29 5.06 -445.56 -2.26 -28.54 16 14 C 0.17 7.18 2.35 44.97 0.11 7.29 16 15 H 0.06 2.67 7.58 -2.39 -0.02 2.65 16 16 C -0.10 -4.74 5.50 30.66 0.17 -4.58 16 17 C -0.01 -0.65 5.59 30.11 0.17 -0.48 16 18 C -0.50 -27.57 5.51 -16.17 -0.09 -27.66 16 19 C 0.03 1.48 5.46 84.65 0.46 1.94 16 20 N -0.93 -55.17 12.73 21.45 0.27 -54.90 16 21 Si 0.94 44.70 27.27 68.60 1.87 46.57 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.26 -11.96 6.46 99.48 0.64 -11.31 16 25 C 0.01 0.52 5.97 30.11 0.18 0.70 16 26 C -0.10 -4.35 5.40 30.66 0.17 -4.19 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.03 7.70 -2.39 -0.02 1.01 16 33 H 0.08 1.02 7.70 -2.39 -0.02 1.01 16 34 H 0.18 1.32 6.46 -2.91 -0.02 1.30 16 35 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 36 H 0.20 1.59 8.06 -2.91 -0.02 1.56 16 37 H 0.41 13.70 7.93 -92.70 -0.73 12.96 16 38 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.03 1.62 4.78 -2.39 -0.01 1.61 16 41 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.04 2.09 7.07 -2.39 -0.02 2.07 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 46 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.32 369.87 2.91 -72.42 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.19 Total: 15.92 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 4.90 Total: -3.69 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.74 Total: -96.47 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.31 Total: -34.75 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.87 Total: 46.57 kcal Total: -75.32 2.91 -72.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196936230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.982 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds