Wall clock time and date at job start Tue Mar 31 2020 14:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32990 * 1 3 3 C 1.47098 * 120.00080 * 2 1 4 4 O 1.21613 * 120.00052 * 5.20727 * 3 2 1 5 5 N 1.34776 * 120.00389 * 185.20255 * 3 2 1 6 6 C 1.46843 * 120.38880 * 185.38718 * 5 3 2 7 7 C 1.53349 * 108.81344 * 236.89098 * 6 5 3 8 8 C 1.53185 * 108.76663 * 308.67961 * 7 6 5 9 9 C 1.52849 * 117.65477 * 269.97446 * 8 7 6 10 10 C 1.52819 * 117.71549 * 201.11856 * 8 7 6 11 11 H 1.09001 * 117.50378 * 215.12752 * 10 8 7 12 12 C 1.50702 * 117.50232 * 0.13856 * 10 8 7 13 13 O 1.21283 * 119.99999 * 85.16137 * 12 10 8 14 14 N 1.34777 * 120.00167 * 265.16741 * 12 10 8 15 15 C 1.47573 * 134.49720 * 180.02562 * 14 12 10 16 16 C 1.53940 * 86.24543 * 155.42335 * 15 14 12 17 17 C 1.50694 * 113.74742 * 137.89631 * 16 15 14 18 18 H 1.08001 * 119.99720 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00515 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00086 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99470 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47249 * 90.00098 * 21 19 17 23 23 H 1.48507 * 109.46550 * 210.00128 * 21 19 17 24 24 H 1.48503 * 109.47220 * 329.99682 * 21 19 17 25 25 C 1.47811 * 134.57911 * 359.94967 * 14 12 10 26 26 C 1.53187 * 115.07660 * 55.44538 * 8 7 6 27 27 C 1.46842 * 120.38020 * 5.36752 * 5 3 2 28 28 H 1.07999 * 120.00041 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99906 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00062 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.58552 * 117.08409 * 6 5 3 32 32 H 1.09005 * 109.68807 * 356.75031 * 6 5 3 33 33 H 1.09008 * 109.58661 * 188.89661 * 7 6 5 34 34 H 1.09001 * 109.59290 * 68.46545 * 7 6 5 35 35 H 1.09003 * 117.50145 * 144.81508 * 9 8 7 36 36 H 1.08997 * 117.50436 * 359.76381 * 9 8 7 37 37 H 1.08997 * 113.76750 * 41.06026 * 15 14 12 38 38 H 1.09001 * 113.77003 * 269.78091 * 15 14 12 39 39 H 1.09006 * 113.74177 * 269.10452 * 16 15 14 40 40 H 0.96998 * 119.99328 * 179.97438 * 20 19 17 41 41 H 1.09000 * 113.66942 * 90.26878 * 25 14 12 42 42 H 1.09007 * 113.94013 * 318.91842 * 25 14 12 43 43 H 1.08999 * 109.58382 * 64.34943 * 26 8 7 44 44 H 1.08998 * 109.58166 * 184.77546 * 26 8 7 45 45 H 1.08996 * 109.57760 * 242.91768 * 27 5 3 46 46 H 1.09000 * 109.58236 * 3.18643 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4611 2.3249 0.0956 5 7 3.4090 1.2764 -0.1058 6 6 4.1611 2.5321 0.0115 7 6 4.9977 2.7280 -1.2587 8 6 5.8041 1.4519 -1.5194 9 6 7.1954 1.3519 -0.8946 10 6 7.0460 1.5640 -2.4027 11 1 7.2773 0.7221 -3.0552 12 6 7.3892 2.9250 -2.9514 13 8 8.0412 3.7007 -2.2849 14 7 6.9717 3.2802 -4.1827 15 6 7.1168 4.4901 -5.0150 16 6 6.9029 3.5612 -6.2238 17 6 5.9980 4.1395 -7.2809 18 1 5.5682 5.1211 -7.1458 19 6 5.7177 3.4151 -8.4202 20 7 4.9283 3.9201 -9.3429 21 14 6.4592 1.7165 -8.6528 22 1 5.5469 0.6952 -8.0786 23 1 6.6477 1.4530 -10.1021 24 1 7.7727 1.6510 -7.9629 25 6 6.1858 2.6155 -5.2435 26 6 4.9742 0.1680 -1.6165 27 6 4.1379 0.0232 -0.3394 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8699 -0.9353 -0.0004 31 1 4.8194 2.4841 0.8788 32 1 3.4681 3.3660 0.1246 33 1 5.6780 3.5687 -1.1221 34 1 4.3381 2.9226 -2.1044 35 1 7.5251 0.3702 -0.5546 36 1 7.5418 2.1967 -0.2993 37 1 8.1108 4.9353 -4.9735 38 1 6.3183 5.2186 -4.8742 39 1 7.8273 3.1530 -6.6326 40 1 4.7315 3.4106 -10.1445 41 1 5.1127 2.7916 -5.1687 42 1 6.4353 1.5639 -5.3858 43 1 4.3135 0.2246 -2.4816 44 1 5.6390 -0.6899 -1.7173 45 1 4.7947 -0.1803 0.5063 46 1 3.4282 -0.7959 -0.4561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268863460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:22 Heat of formation + Delta-G solvation = 15.507257 kcal Electronic energy + Delta-G solvation = -27072.425629 eV Core-core repulsion = 23350.752443 eV Total energy + Delta-G solvation = -3721.673186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72275 -39.73884 -38.43557 -36.96392 -35.30909 -33.39170 -32.65278 -31.40707 -30.23514 -29.52660 -25.95931 -25.20997 -24.93402 -23.95730 -23.02345 -22.32007 -20.03161 -19.60934 -18.46613 -18.21638 -17.66499 -17.18152 -16.72945 -16.13488 -15.46656 -15.41121 -15.26282 -14.63396 -14.55573 -14.19029 -14.01457 -13.76699 -13.53000 -13.30272 -13.16698 -12.86551 -12.68630 -12.32588 -12.12872 -11.96710 -11.87949 -11.79300 -11.66385 -11.41583 -10.99037 -10.95573 -10.73285 -10.25954 -10.13491 -10.09234 -10.04855 -9.98800 -9.83168 -9.42559 -9.13213 -8.78542 -8.71065 -8.05766 -6.22862 -4.25699 1.13892 2.76343 2.85410 3.10458 3.16032 3.24696 3.26688 3.32063 3.75142 4.24503 4.27318 4.33055 4.54162 4.57628 4.72208 4.73758 4.83363 4.95920 5.01405 5.08358 5.17865 5.26575 5.28901 5.41715 5.43017 5.59190 5.63156 5.68237 5.72695 5.82689 5.90852 5.94510 5.96538 6.00305 6.06898 6.11602 6.13070 6.16428 6.29741 6.35477 6.36467 6.54565 7.15125 7.18750 7.52102 7.98260 8.26555 8.37433 8.61720 8.80820 9.37436 10.89353 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.003654 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.765355 B = 7661.814913 C = 8734.328031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.218 4.218 3 C 0.543 3.457 4 O -0.545 6.545 5 N -0.606 5.606 6 C 0.118 3.882 7 C -0.101 4.101 8 C -0.100 4.100 9 C -0.139 4.139 10 C -0.171 4.171 11 H 0.121 0.879 12 C 0.557 3.443 13 O -0.561 6.561 14 N -0.634 5.634 15 C 0.117 3.883 16 C -0.012 4.012 17 C -0.514 4.514 18 H 0.080 0.920 19 C 0.077 3.923 20 N -0.892 5.892 21 Si 0.872 3.128 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.263 1.263 25 C 0.091 3.909 26 C -0.099 4.099 27 C 0.111 3.889 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.266 0.734 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 -13.324 18.492 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.238 4.238 3 C 0.334 3.666 4 O -0.424 6.424 5 N -0.339 5.339 6 C -0.004 4.004 7 C -0.139 4.139 8 C -0.101 4.101 9 C -0.176 4.176 10 C -0.192 4.192 11 H 0.139 0.861 12 C 0.346 3.654 13 O -0.442 6.442 14 N -0.367 5.367 15 C -0.004 4.004 16 C -0.032 4.032 17 C -0.551 4.551 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.529 5.529 21 Si 0.699 3.301 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.187 1.187 25 C -0.032 4.032 26 C -0.137 4.137 27 C -0.012 4.012 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.147 0.853 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.830 -12.431 18.887 22.787 hybrid contribution 0.446 -1.192 -0.474 1.358 sum -2.384 -13.623 18.413 23.029 Atomic orbital electron populations 1.24769 0.95388 1.03352 0.89663 1.22867 0.96391 0.97133 1.07450 1.18725 0.81789 0.89892 0.76194 1.90787 1.67698 1.33498 1.50419 1.47934 1.05833 1.08790 1.71299 1.21557 0.94813 0.86681 0.97373 1.21571 0.98432 0.95616 0.98304 1.21422 0.88792 0.96847 1.03016 1.23082 0.97593 1.03474 0.93479 1.22280 1.04284 0.97546 0.95052 0.86089 1.19185 0.79405 0.87283 0.79518 1.90641 1.41589 1.53838 1.58113 1.50312 1.52610 1.19940 1.13867 1.23276 1.00732 0.89145 0.87261 1.21060 0.97017 0.92673 0.92432 1.20838 1.28171 1.04756 1.01380 0.90219 1.24999 0.94370 0.97863 0.95384 1.69893 1.35891 1.38058 1.09061 0.86904 0.80504 0.84900 0.77748 1.19970 1.21146 1.18730 1.23993 0.96976 0.97717 0.84487 1.21585 0.98339 0.95559 0.98239 1.21790 0.95679 0.86025 0.97737 0.86777 0.86699 0.85317 0.91206 0.88694 0.89937 0.90691 0.88163 0.87609 0.91677 0.90151 0.91898 0.92358 0.89647 0.92502 0.90463 0.90113 0.90939 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 14.31 28.91 0.41 -0.28 16 2 C -0.22 -1.84 9.26 -37.81 -0.35 -2.19 16 3 C 0.54 6.61 7.62 -12.67 -0.10 6.51 16 4 O -0.55 -8.75 15.62 5.27 0.08 -8.67 16 5 N -0.61 -6.43 2.92 -174.11 -0.51 -6.94 16 6 C 0.12 1.36 6.44 -3.67 -0.02 1.33 16 7 C -0.10 -1.31 5.23 -26.45 -0.14 -1.45 16 8 C -0.10 -1.14 1.94 -154.49 -0.30 -1.44 16 9 C -0.14 -1.54 9.45 -26.79 -0.25 -1.80 16 10 C -0.17 -2.33 5.67 -91.85 -0.52 -2.86 16 11 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 12 C 0.56 10.10 6.43 -10.98 -0.07 10.03 16 13 O -0.56 -11.78 16.98 5.56 0.09 -11.69 16 14 N -0.63 -12.04 3.62 -177.44 -0.64 -12.69 16 15 C 0.12 2.34 8.38 -2.98 -0.02 2.32 16 16 C -0.01 -0.27 2.90 -90.85 -0.26 -0.53 16 17 C -0.51 -13.26 9.32 -34.44 -0.32 -13.58 16 18 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 19 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 20 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 21 Si 0.87 19.73 27.17 -169.99 -4.62 15.11 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.26 -5.68 6.25 56.52 0.35 -5.33 16 25 C 0.09 1.74 7.48 -2.86 -0.02 1.72 16 26 C -0.10 -0.86 5.83 -26.45 -0.15 -1.02 16 27 C 0.11 0.82 6.33 -3.67 -0.02 0.80 16 28 H 0.11 1.01 7.50 -52.49 -0.39 0.62 16 29 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.13 0.71 5.99 -52.48 -0.31 0.39 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.24 6.97 -51.93 -0.36 0.88 16 33 H 0.08 1.21 7.24 -51.92 -0.38 0.83 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 1.33 7.77 -51.93 -0.40 0.92 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 39 H 0.06 1.39 6.58 -51.93 -0.34 1.05 16 40 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 42 H 0.06 1.00 8.08 -51.92 -0.42 0.58 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.56 8.10 -51.93 -0.42 0.13 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.48 5.33 -51.93 -0.28 0.20 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -32.64 373.97 -8.57 -41.21 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.14 Total: 3.41 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.25 Total: -0.46 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.38 Total: -44.54 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: 0.18 Total: -20.36 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.62 Total: 15.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.64 -8.57 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268863460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.714 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds