Wall clock time and date at job start Tue Mar 31 2020 14:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32990 * 1 3 3 C 1.47098 * 120.00080 * 2 1 4 4 O 1.21613 * 120.00052 * 5.20727 * 3 2 1 5 5 N 1.34776 * 120.00389 * 185.20255 * 3 2 1 6 6 C 1.46843 * 120.38880 * 185.38718 * 5 3 2 7 7 C 1.53349 * 108.81344 * 236.89098 * 6 5 3 8 8 C 1.53185 * 108.76663 * 308.67961 * 7 6 5 9 9 C 1.52849 * 117.65477 * 269.97446 * 8 7 6 10 10 C 1.52819 * 117.71549 * 201.11856 * 8 7 6 11 11 H 1.09001 * 117.50378 * 215.12752 * 10 8 7 12 12 C 1.50702 * 117.50232 * 0.13856 * 10 8 7 13 13 O 1.21283 * 119.99999 * 85.16137 * 12 10 8 14 14 N 1.34777 * 120.00167 * 265.16741 * 12 10 8 15 15 C 1.47573 * 134.49720 * 180.02562 * 14 12 10 16 16 C 1.53940 * 86.24543 * 155.42335 * 15 14 12 17 17 C 1.50694 * 113.74742 * 137.89631 * 16 15 14 18 18 H 1.08001 * 119.99720 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00515 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00086 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99470 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47249 * 90.00098 * 21 19 17 23 23 H 1.48507 * 109.46550 * 210.00128 * 21 19 17 24 24 H 1.48503 * 109.47220 * 329.99682 * 21 19 17 25 25 C 1.47811 * 134.57911 * 359.94967 * 14 12 10 26 26 C 1.53187 * 115.07660 * 55.44538 * 8 7 6 27 27 C 1.46842 * 120.38020 * 5.36752 * 5 3 2 28 28 H 1.07999 * 120.00041 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99906 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.00062 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.58552 * 117.08409 * 6 5 3 32 32 H 1.09005 * 109.68807 * 356.75031 * 6 5 3 33 33 H 1.09008 * 109.58661 * 188.89661 * 7 6 5 34 34 H 1.09001 * 109.59290 * 68.46545 * 7 6 5 35 35 H 1.09003 * 117.50145 * 144.81508 * 9 8 7 36 36 H 1.08997 * 117.50436 * 359.76381 * 9 8 7 37 37 H 1.08997 * 113.76750 * 41.06026 * 15 14 12 38 38 H 1.09001 * 113.77003 * 269.78091 * 15 14 12 39 39 H 1.09006 * 113.74177 * 269.10452 * 16 15 14 40 40 H 0.96998 * 119.99328 * 179.97438 * 20 19 17 41 41 H 1.09000 * 113.66942 * 90.26878 * 25 14 12 42 42 H 1.09007 * 113.94013 * 318.91842 * 25 14 12 43 43 H 1.08999 * 109.58382 * 64.34943 * 26 8 7 44 44 H 1.08998 * 109.58166 * 184.77546 * 26 8 7 45 45 H 1.08996 * 109.57760 * 242.91768 * 27 5 3 46 46 H 1.09000 * 109.58236 * 3.18643 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4611 2.3249 0.0956 5 7 3.4090 1.2764 -0.1058 6 6 4.1611 2.5321 0.0115 7 6 4.9977 2.7280 -1.2587 8 6 5.8041 1.4519 -1.5194 9 6 7.1954 1.3519 -0.8946 10 6 7.0460 1.5640 -2.4027 11 1 7.2773 0.7221 -3.0552 12 6 7.3892 2.9250 -2.9514 13 8 8.0412 3.7007 -2.2849 14 7 6.9717 3.2802 -4.1827 15 6 7.1168 4.4901 -5.0150 16 6 6.9029 3.5612 -6.2238 17 6 5.9980 4.1395 -7.2809 18 1 5.5682 5.1211 -7.1458 19 6 5.7177 3.4151 -8.4202 20 7 4.9283 3.9201 -9.3429 21 14 6.4592 1.7165 -8.6528 22 1 5.5469 0.6952 -8.0786 23 1 6.6477 1.4530 -10.1021 24 1 7.7727 1.6510 -7.9629 25 6 6.1858 2.6155 -5.2435 26 6 4.9742 0.1680 -1.6165 27 6 4.1379 0.0232 -0.3394 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8699 -0.9353 -0.0004 31 1 4.8194 2.4841 0.8788 32 1 3.4681 3.3660 0.1246 33 1 5.6780 3.5687 -1.1221 34 1 4.3381 2.9226 -2.1044 35 1 7.5251 0.3702 -0.5546 36 1 7.5418 2.1967 -0.2993 37 1 8.1108 4.9353 -4.9735 38 1 6.3183 5.2186 -4.8742 39 1 7.8273 3.1530 -6.6326 40 1 4.7315 3.4106 -10.1445 41 1 5.1127 2.7916 -5.1687 42 1 6.4353 1.5639 -5.3858 43 1 4.3135 0.2246 -2.4816 44 1 5.6390 -0.6899 -1.7173 45 1 4.7947 -0.1803 0.5063 46 1 3.4282 -0.7959 -0.4561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268863460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:21 Heat of formation + Delta-G solvation = -5.388645 kcal Electronic energy + Delta-G solvation = -27073.331743 eV Core-core repulsion = 23350.752443 eV Total energy + Delta-G solvation = -3722.579300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75031 -40.96331 -39.67550 -38.35110 -36.30365 -34.66821 -34.07415 -32.20418 -31.53878 -30.80596 -27.64297 -26.90285 -25.79264 -24.70147 -24.29887 -23.11680 -21.53545 -20.61576 -19.67332 -19.20216 -19.10460 -18.52292 -18.07937 -17.03879 -16.79508 -16.76481 -16.27158 -15.99575 -15.65555 -15.35751 -15.04646 -14.84754 -14.78351 -14.44692 -14.34237 -14.14406 -13.91165 -13.52249 -13.45578 -13.23582 -13.05455 -12.81998 -12.71802 -12.61826 -12.47145 -12.24298 -11.86146 -11.76749 -11.60607 -11.34018 -11.19984 -11.03989 -10.87270 -10.76583 -10.74064 -10.60383 -9.67365 -9.61101 -8.28627 -6.37451 0.46984 1.39559 1.43482 1.49971 1.52609 1.89509 2.00037 2.30372 2.37574 2.72668 3.02344 3.33122 3.51657 3.62517 3.77204 3.78823 3.89562 4.02595 4.03325 4.16414 4.25887 4.30505 4.42578 4.44422 4.46853 4.52869 4.56264 4.68577 4.69891 4.72136 4.75853 4.79419 4.80980 4.89740 4.91328 4.94003 5.09210 5.17043 5.29697 5.33843 5.36320 5.41818 5.58417 5.58575 6.25792 6.40985 6.67540 6.83900 7.12778 7.13847 7.29988 8.87345 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.003654 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.765355 B = 7661.814913 C = 8734.328031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.227 4.227 3 C 0.529 3.471 4 O -0.602 6.602 5 N -0.605 5.605 6 C 0.123 3.877 7 C -0.097 4.097 8 C -0.092 4.092 9 C -0.118 4.118 10 C -0.190 4.190 11 H 0.145 0.855 12 C 0.552 3.448 13 O -0.596 6.596 14 N -0.637 5.637 15 C 0.114 3.886 16 C -0.015 4.015 17 C -0.519 4.519 18 H 0.035 0.965 19 C 0.019 3.981 20 N -0.946 5.946 21 Si 0.940 3.060 22 H -0.253 1.253 23 H -0.290 1.290 24 H -0.241 1.241 25 C 0.106 3.894 26 C -0.094 4.094 27 C 0.106 3.894 28 H 0.089 0.911 29 H 0.154 0.846 30 H 0.169 0.831 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.142 0.858 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.268 0.732 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.116 0.884 45 H 0.097 0.903 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -18.680 20.188 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.247 4.247 3 C 0.322 3.678 4 O -0.485 6.485 5 N -0.336 5.336 6 C 0.000 4.000 7 C -0.135 4.135 8 C -0.093 4.093 9 C -0.155 4.155 10 C -0.210 4.210 11 H 0.163 0.837 12 C 0.344 3.656 13 O -0.479 6.479 14 N -0.369 5.369 15 C -0.008 4.008 16 C -0.035 4.035 17 C -0.557 4.557 18 H 0.054 0.946 19 C -0.179 4.179 20 N -0.585 5.585 21 Si 0.762 3.238 22 H -0.177 1.177 23 H -0.216 1.216 24 H -0.165 1.165 25 C -0.016 4.016 26 C -0.132 4.132 27 C -0.015 4.015 28 H 0.107 0.893 29 H 0.171 0.829 30 H 0.186 0.814 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.160 0.840 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.134 0.866 45 H 0.115 0.885 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.790 -17.817 20.611 27.303 hybrid contribution 0.101 0.678 -0.968 1.186 sum -1.689 -17.139 19.643 26.124 Atomic orbital electron populations 1.25025 0.95358 1.04030 0.87865 1.23005 0.96595 0.96430 1.08642 1.19540 0.82278 0.90725 0.75258 1.90759 1.68858 1.35752 1.53159 1.48083 1.05680 1.09469 1.70360 1.21380 0.94358 0.87046 0.97193 1.21430 0.97880 0.96240 0.97952 1.21512 0.88842 0.97142 1.01774 1.23200 0.96414 1.04856 0.91016 1.22340 1.06779 0.94983 0.96919 0.83693 1.20051 0.78149 0.88876 0.78541 1.90619 1.43024 1.55528 1.58690 1.50300 1.52849 1.19179 1.14607 1.23139 1.00636 0.89592 0.87448 1.20974 0.96577 0.94019 0.91890 1.21002 1.28448 1.03290 1.02930 0.94626 1.25911 0.94686 1.02531 0.94772 1.70056 1.38134 1.40281 1.10008 0.85830 0.80810 0.79484 0.77634 1.17740 1.21643 1.16458 1.23721 0.96234 0.98598 0.83063 1.21658 0.98357 0.94798 0.98407 1.22138 0.96364 0.84993 0.97983 0.89275 0.82850 0.81418 0.89323 0.91394 0.92566 0.93560 0.83997 0.89517 0.91240 0.91255 0.91295 0.92291 0.90512 0.89441 0.91673 0.86604 0.88503 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 14.31 66.65 0.95 -0.11 16 2 C -0.23 -3.17 9.26 23.43 0.22 -2.96 16 3 C 0.53 12.48 7.62 86.57 0.66 13.14 16 4 O -0.60 -20.28 15.62 -4.07 -0.06 -20.35 16 5 N -0.60 -11.78 2.92 -823.00 -2.40 -14.18 16 6 C 0.12 2.85 6.44 86.43 0.56 3.41 16 7 C -0.10 -2.54 5.23 30.77 0.16 -2.38 16 8 C -0.09 -1.84 1.94 -52.17 -0.10 -1.94 16 9 C -0.12 -2.17 9.45 30.55 0.29 -1.88 16 10 C -0.19 -4.61 5.67 -11.59 -0.07 -4.67 16 11 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 12 C 0.55 19.57 6.43 87.66 0.56 20.13 16 13 O -0.60 -25.16 16.98 -3.04 -0.05 -25.21 16 14 N -0.64 -23.89 3.62 -833.69 -3.02 -26.90 16 15 C 0.11 4.68 8.38 86.48 0.72 5.41 16 16 C -0.02 -0.66 2.90 -10.89 -0.03 -0.69 16 17 C -0.52 -27.71 9.32 25.60 0.24 -27.47 16 18 H 0.04 2.15 8.06 -2.91 -0.02 2.12 16 19 C 0.02 1.05 5.47 84.66 0.46 1.51 16 20 N -0.95 -56.26 13.96 21.45 0.30 -55.96 16 21 Si 0.94 39.64 27.17 68.60 1.86 41.50 16 22 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.24 -9.27 6.25 99.48 0.62 -8.65 16 25 C 0.11 3.92 7.48 86.43 0.65 4.56 16 26 C -0.09 -1.20 5.83 30.77 0.18 -1.02 16 27 C 0.11 1.07 6.33 86.43 0.55 1.62 16 28 H 0.09 1.58 7.50 -2.91 -0.02 1.56 16 29 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 30 H 0.17 0.93 5.99 -2.91 -0.02 0.91 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.93 6.97 -2.38 -0.02 1.91 16 33 H 0.06 1.74 7.24 -2.38 -0.02 1.72 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 1.99 7.77 -2.39 -0.02 1.97 16 37 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.07 2.95 8.09 -2.39 -0.02 2.93 16 39 H 0.07 2.92 6.58 -2.38 -0.02 2.90 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.08 2.96 8.09 -2.39 -0.02 2.95 16 42 H 0.09 2.73 8.08 -2.38 -0.02 2.71 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 44 H 0.12 0.76 8.10 -2.39 -0.02 0.74 16 45 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.12 0.55 5.33 -2.39 -0.01 0.53 16 Total: -1.00 -77.88 373.97 3.51 -74.36 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.88 Total: 20.05 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 6.00 Total: 6.68 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -5.12 Total: -97.04 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.12 Total: -45.56 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.86 Total: 41.50 kcal Total: -77.88 3.51 -74.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268863460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.975 kcal (2) G-P(sol) polarization free energy of solvation -77.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds