Wall clock time and date at job start Tue Mar 31 2020 14:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46865 * 2 1 4 4 O 1.21281 * 120.00183 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99922 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00012 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47280 * 180.02562 * 6 5 3 8 8 C 1.53934 * 113.73278 * 271.72889 * 7 6 5 9 9 N 1.47963 * 86.17978 * 221.91881 * 8 7 6 10 10 C 1.46902 * 110.99605 * 137.58307 * 9 8 7 11 11 C 1.50696 * 109.47364 * 90.63999 * 10 9 8 12 12 C 1.38302 * 119.93077 * 269.72905 * 11 10 9 13 13 C 1.38104 * 120.06777 * 179.72758 * 12 11 10 14 14 C 1.38881 * 119.93053 * 0.51556 * 13 12 11 15 15 O 1.35747 * 120.07321 * 179.73170 * 14 13 12 16 16 C 1.34829 * 117.00471 * 174.48724 * 15 14 13 17 17 H 1.07995 * 119.99569 * 5.05626 * 16 15 14 18 18 C 1.38649 * 119.99899 * 185.05505 * 16 15 14 19 19 N 1.31551 * 120.00398 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99825 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46853 * 60.00142 * 20 18 16 22 22 H 1.48504 * 109.47129 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47295 * 300.00143 * 20 18 16 24 24 C 1.38889 * 119.86267 * 359.75244 * 14 13 12 25 25 C 1.38104 * 119.92698 * 0.02562 * 24 14 13 26 26 C 1.47960 * 90.76172 * 24.69259 * 9 8 7 27 27 H 1.08995 * 109.47312 * 60.00274 * 1 2 3 28 28 H 1.09005 * 109.47107 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47121 * 300.00069 * 1 2 3 30 30 H 1.08992 * 109.47306 * 239.99929 * 2 1 3 31 31 H 1.08995 * 109.47312 * 119.99726 * 2 1 3 32 32 H 0.97003 * 120.00078 * 0.02562 * 5 3 2 33 33 H 1.09002 * 109.47124 * 60.00166 * 6 5 3 34 34 H 1.09004 * 109.47331 * 300.00133 * 6 5 3 35 35 H 1.09004 * 112.93884 * 43.43423 * 7 6 5 36 36 H 1.08999 * 113.75650 * 336.23663 * 8 7 6 37 37 H 1.09004 * 113.76008 * 107.59864 * 8 7 6 38 38 H 1.09006 * 109.46706 * 210.63914 * 10 9 8 39 39 H 1.08993 * 109.47324 * 330.63825 * 10 9 8 40 40 H 1.07995 * 119.96628 * 359.97208 * 12 11 10 41 41 H 1.07991 * 120.03330 * 180.27018 * 13 12 11 42 42 H 0.97003 * 120.00748 * 179.97438 * 19 18 16 43 43 H 1.07990 * 120.03565 * 179.97438 * 24 14 13 44 44 H 1.08001 * 119.96098 * 179.97438 * 25 24 14 45 45 H 1.09004 * 113.75165 * 220.99834 * 26 9 8 46 46 H 1.09000 * 113.76359 * 89.62860 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8456 3.0484 0.0000 7 6 5.3757 3.0485 0.0001 8 6 5.9951 3.0066 1.4087 9 7 6.9610 4.0084 0.9059 10 6 7.1913 5.0635 1.9017 11 6 8.3499 4.6771 2.7844 12 6 8.1240 3.9591 3.9447 13 6 9.1843 3.5986 4.7528 14 6 10.4774 3.9670 4.4049 15 8 11.5211 3.6188 5.1999 16 6 12.7581 3.9076 4.7477 17 1 12.8813 4.4666 3.8320 18 6 13.8717 3.4868 5.4584 19 7 13.7216 2.8054 6.5736 20 14 15.5855 3.8862 4.8315 21 1 15.7503 5.3595 4.7457 22 1 16.5966 3.3290 5.7656 23 1 15.7720 3.2880 3.4852 24 6 10.7004 4.6928 3.2419 25 6 9.6363 5.0463 2.4356 26 6 5.9952 4.4523 -0.1233 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.9877 0.9299 0.0005 33 1 3.4819 3.5627 0.8895 34 1 3.4827 3.5617 -0.8905 35 1 5.8006 2.3192 -0.6897 36 1 5.3359 3.3855 2.1897 37 1 6.4480 2.0477 1.6610 38 1 7.4190 6.0001 1.3926 39 1 6.2965 5.1895 2.5112 40 1 7.1179 3.6766 4.2170 41 1 9.0077 3.0342 5.6564 42 1 14.5007 2.5106 7.0707 43 1 11.7046 4.9811 2.9689 44 1 9.8091 5.6110 1.5314 45 1 6.4483 4.6484 -1.0951 46 1 5.3360 5.2540 0.2097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001373489400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:44 Heat of formation + Delta-G solvation = -12.845245 kcal Electronic energy + Delta-G solvation = -25166.917702 eV Core-core repulsion = 21444.015060 eV Total energy + Delta-G solvation = -3722.902643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.53893 -39.69043 -38.86330 -36.58270 -35.08054 -33.18798 -32.45086 -31.56657 -30.15815 -28.97393 -26.53285 -26.22697 -25.27673 -24.20534 -22.46606 -21.94011 -20.84857 -20.30457 -19.71330 -17.96661 -17.46930 -16.95438 -16.59507 -16.21730 -15.75861 -15.33287 -15.08178 -14.61961 -14.47344 -14.36372 -13.98577 -13.83623 -13.56384 -13.34573 -13.00521 -12.79430 -12.75063 -12.68886 -12.56061 -12.12747 -11.77659 -11.72773 -11.65871 -11.55234 -11.26081 -11.08748 -10.93445 -10.74219 -10.59465 -10.48287 -10.40684 -10.13166 -9.41675 -9.32346 -8.85719 -8.77683 -8.15818 -7.16415 -6.44313 -4.03192 2.23480 2.30385 2.33065 2.83132 3.13364 3.14379 3.17218 3.83525 3.97330 4.13393 4.38743 4.41046 4.59836 4.68429 4.69891 4.88966 5.02182 5.06795 5.12481 5.14313 5.23162 5.28871 5.33439 5.37300 5.41516 5.43417 5.54907 5.56130 5.64974 5.72823 5.78225 5.82778 5.85098 5.94525 6.12025 6.18936 6.28701 6.46416 6.71004 6.92837 6.96720 7.09119 7.14566 7.25706 7.41972 7.45632 7.84181 7.89942 8.00764 9.01315 9.71689 10.73678 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.001927 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.991617 B =14530.540638 C =15025.824641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.509 3.491 4 O -0.543 6.543 5 N -0.730 5.730 6 C 0.127 3.873 7 C -0.131 4.131 8 C 0.011 3.989 9 N -0.469 5.469 10 C 0.079 3.921 11 C -0.175 4.175 12 C -0.066 4.066 13 C -0.194 4.194 14 C 0.155 3.845 15 O -0.179 6.179 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.234 4.234 25 C -0.053 4.053 26 C 0.009 3.991 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.403 0.597 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.617 -2.954 -14.157 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.295 3.705 4 O -0.420 6.420 5 N -0.382 5.382 6 C 0.003 3.997 7 C -0.150 4.150 8 C -0.118 4.118 9 N -0.191 5.191 10 C -0.049 4.049 11 C -0.176 4.176 12 C -0.085 4.085 13 C -0.213 4.213 14 C 0.101 3.899 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.254 4.254 25 C -0.071 4.071 26 C -0.121 4.121 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.123 0.877 45 H 0.108 0.892 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.339 -2.666 -13.918 23.975 hybrid contribution 0.604 0.200 0.015 0.636 sum -18.735 -2.466 -13.904 23.460 Atomic orbital electron populations 1.21529 0.93003 1.01626 1.03354 1.21642 0.98737 0.93704 1.04446 1.20844 0.82063 0.91962 0.75581 1.90709 1.55349 1.46676 1.49304 1.46066 1.07236 1.09092 1.75832 1.21420 0.92850 0.83020 1.02388 1.23289 0.93209 0.99419 0.99066 1.24066 0.93694 0.99038 0.95001 1.68659 1.31631 1.09855 1.08984 1.21362 0.96205 0.94384 0.92913 1.18985 0.93750 1.07477 0.97374 1.20429 0.97023 0.97083 0.93992 1.20160 0.90396 1.07972 1.02762 1.19387 0.88978 0.91990 0.89539 1.83973 1.13040 1.70491 1.40702 1.21276 0.79587 1.36270 1.09669 0.89132 1.25280 0.99408 0.96117 0.95700 1.70025 1.31126 1.34464 1.14235 0.85788 0.80082 0.78969 0.78633 1.19519 1.20287 1.19501 1.21153 0.99620 1.06688 0.97908 1.20550 0.91761 0.97492 0.97339 1.23907 0.94165 0.95238 0.98762 0.92033 0.92037 0.91974 0.88903 0.88795 0.76305 0.91377 0.91240 0.87664 0.91185 0.89282 0.90957 0.93897 0.87701 0.86680 0.91995 0.85628 0.87664 0.89151 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.20 37.16 0.34 -0.52 16 2 C -0.15 -0.80 6.42 -27.88 -0.18 -0.97 16 3 C 0.51 4.50 7.83 -10.99 -0.09 4.42 16 4 O -0.54 -7.13 15.98 5.56 0.09 -7.04 16 5 N -0.73 -5.12 5.56 -60.29 -0.33 -5.45 16 6 C 0.13 1.00 5.53 -4.04 -0.02 0.98 16 7 C -0.13 -1.01 3.94 -89.69 -0.35 -1.36 16 8 C 0.01 0.11 7.51 -2.77 -0.02 0.09 16 9 N -0.47 -5.62 6.14 -239.73 -1.47 -7.09 16 10 C 0.08 1.04 4.92 -4.98 -0.02 1.01 16 11 C -0.17 -2.96 5.44 -104.58 -0.57 -3.53 16 12 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 16 13 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 14 C 0.15 3.77 6.65 -39.10 -0.26 3.51 16 15 O -0.18 -5.14 9.76 0.06 0.00 -5.14 16 16 C -0.39 -11.01 9.49 30.88 0.29 -10.71 16 17 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 20 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 25 C -0.05 -0.98 9.69 -39.61 -0.38 -1.36 16 26 C 0.01 0.08 7.51 -2.77 -0.02 0.06 16 27 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.40 1.85 8.47 -40.82 -0.35 1.50 16 33 H 0.07 0.62 7.84 -51.93 -0.41 0.21 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.69 7.23 -51.93 -0.38 0.31 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 39 H 0.04 0.52 7.32 -51.93 -0.38 0.14 16 40 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -33.56 383.73 -9.83 -43.39 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.11 Total: 3.64 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.52 Total: -19.00 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -1.05 Total: -37.17 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.56 -9.83 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001373489400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.540 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds