Wall clock time and date at job start Tue Mar 31 2020 14:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47369 * 2 1 4 4 O 1.21281 * 119.99439 * 359.97438 * 3 2 1 5 5 N 1.34772 * 120.00412 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00064 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47239 * 179.97438 * 6 5 3 8 8 H 1.09001 * 112.95566 * 72.85083 * 7 6 5 9 9 C 1.53931 * 113.75967 * 204.50276 * 7 6 5 10 10 C 1.53931 * 86.34244 * 138.03650 * 9 7 6 11 11 N 1.47958 * 113.75541 * 301.06116 * 7 6 5 12 12 C 1.46904 * 110.99907 * 108.09857 * 11 7 6 13 13 C 1.50693 * 109.47258 * 169.99705 * 12 11 7 14 14 C 1.38304 * 119.93577 * 269.73094 * 13 12 11 15 15 C 1.38095 * 120.07404 * 179.72385 * 14 13 12 16 16 C 1.38882 * 119.92952 * 0.52599 * 15 14 13 17 17 O 1.35750 * 120.06960 * 179.72820 * 16 15 14 18 18 C 1.34828 * 117.00088 * 174.48353 * 17 16 15 19 19 H 1.08004 * 119.99466 * 5.05525 * 18 17 16 20 20 C 1.38651 * 120.00355 * 185.05796 * 18 17 16 21 21 N 1.31550 * 120.00186 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99762 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46971 * 90.00444 * 22 20 18 24 24 H 1.48501 * 109.47143 * 210.00125 * 22 20 18 25 25 H 1.48502 * 109.47405 * 330.00425 * 22 20 18 26 26 C 1.38877 * 119.85903 * 359.74499 * 16 15 14 27 27 C 1.38101 * 119.93503 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.46845 * 60.00347 * 1 2 3 29 29 H 1.09001 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47014 * 299.99980 * 1 2 3 31 31 H 1.08997 * 109.47733 * 239.99822 * 2 1 3 32 32 H 1.08999 * 109.47300 * 119.99374 * 2 1 3 33 33 H 0.96998 * 120.00172 * 359.97438 * 5 3 2 34 34 H 1.08997 * 109.47714 * 59.99304 * 6 5 3 35 35 H 1.09009 * 109.46870 * 299.99357 * 6 5 3 36 36 H 1.09007 * 113.73142 * 252.39477 * 9 7 6 37 37 H 1.09002 * 113.73444 * 23.67550 * 9 7 6 38 38 H 1.08999 * 113.76097 * 90.59550 * 10 9 7 39 39 H 1.08997 * 113.75881 * 221.85071 * 10 9 7 40 40 H 1.08994 * 109.47527 * 289.99990 * 12 11 7 41 41 H 1.09002 * 109.47080 * 50.00166 * 12 11 7 42 42 H 1.08005 * 119.96128 * 359.97438 * 14 13 12 43 43 H 1.07997 * 120.03602 * 180.27071 * 15 14 13 44 44 H 0.97005 * 119.99920 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.03426 * 179.97438 * 26 16 15 46 46 H 1.08000 * 119.96570 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0000 7 6 5.3758 3.0484 -0.0001 8 1 5.8008 2.7529 -0.9593 9 6 5.9959 4.3301 0.5847 10 6 7.0019 3.4033 1.2908 11 7 5.9719 2.3492 1.1596 12 6 6.5739 1.0726 0.7521 13 6 7.3782 0.5090 1.8950 14 6 8.7177 0.8298 2.0206 15 6 9.4561 0.3195 3.0701 16 6 8.8549 -0.5255 3.9939 17 8 9.5794 -1.0332 5.0236 18 6 8.9102 -1.7526 5.9468 19 1 7.8622 -1.9716 5.8050 20 6 9.5673 -2.2112 7.0783 21 7 8.9145 -2.9136 7.9788 22 14 11.3802 -1.8329 7.3232 23 1 11.5232 -0.5528 8.0624 24 1 12.0135 -2.9275 8.1018 25 1 12.0450 -1.7176 6.0003 26 6 7.5111 -0.8502 3.8620 27 6 6.7769 -0.3328 2.8129 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.9878 0.9299 -0.0005 34 1 3.4828 3.5617 0.8904 35 1 3.4819 3.5626 -0.8896 36 1 6.4488 4.9796 -0.1644 37 1 5.3364 4.8640 1.2689 38 1 7.9040 3.2106 0.7100 39 1 7.2127 3.6879 2.3216 40 1 5.7864 0.3697 0.4807 41 1 7.2265 1.2361 -0.1055 42 1 9.1857 1.4833 1.2993 43 1 10.5009 0.5738 3.1700 44 1 9.3743 -3.2348 8.7703 45 1 7.0408 -1.5073 4.5786 46 1 5.7317 -0.5847 2.7101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001392817190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:29 Heat of formation + Delta-G solvation = -33.090830 kcal Electronic energy + Delta-G solvation = -26018.730677 eV Core-core repulsion = 22294.950120 eV Total energy + Delta-G solvation = -3723.780557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.47012 -40.77226 -40.26166 -38.31753 -35.57536 -34.51492 -33.70384 -33.01733 -31.80846 -29.71900 -29.24611 -27.28278 -25.51690 -24.83719 -23.87192 -23.43934 -21.85947 -21.36744 -20.43456 -19.78293 -19.09490 -18.16626 -17.29155 -17.05167 -16.68254 -16.62423 -16.41175 -15.86454 -15.72301 -15.60687 -15.32977 -14.96985 -14.77830 -14.49384 -14.31149 -14.19907 -14.09502 -13.67571 -13.26392 -13.12019 -13.09896 -12.85362 -12.64722 -12.63428 -12.50529 -12.22926 -12.15989 -12.02876 -11.92095 -11.67366 -11.56224 -11.25927 -10.91023 -10.84080 -10.03843 -9.78898 -9.67314 -8.97199 -8.50698 -6.23259 0.58754 0.63619 1.30567 1.34676 1.50966 1.68314 2.24308 2.27141 2.71726 2.96113 3.11706 3.23813 3.58668 3.81849 3.83411 3.96857 4.05779 4.13406 4.16110 4.24039 4.26854 4.35375 4.42298 4.49520 4.56289 4.60681 4.71061 4.75333 4.82120 4.90708 4.94591 4.98785 5.00599 5.02733 5.06715 5.22378 5.29312 5.31264 5.35824 5.41769 5.53793 5.63319 5.76627 5.82311 5.91699 6.16477 6.26760 6.57451 6.83824 7.28882 7.58752 8.61095 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.002712 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.898388 B =10322.854457 C =11693.998431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.503 3.497 4 O -0.592 6.592 5 N -0.716 5.716 6 C 0.142 3.858 7 C 0.023 3.977 8 H 0.108 0.892 9 C -0.127 4.127 10 C 0.003 3.997 11 N -0.487 5.487 12 C 0.079 3.921 13 C -0.144 4.144 14 C -0.059 4.059 15 C -0.193 4.193 16 C 0.118 3.882 17 O -0.246 6.246 18 C -0.398 4.398 19 H 0.079 0.921 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.267 1.267 25 H -0.262 1.262 26 C -0.239 4.239 27 C -0.056 4.056 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.410 0.590 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.152 0.848 43 H 0.126 0.874 44 H 0.285 0.715 45 H 0.103 0.897 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 10.632 -21.872 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.182 4.182 3 C 0.291 3.709 4 O -0.473 6.473 5 N -0.368 5.368 6 C 0.017 3.983 7 C -0.086 4.086 8 H 0.125 0.875 9 C -0.165 4.165 10 C -0.125 4.125 11 N -0.211 5.211 12 C -0.049 4.049 13 C -0.145 4.145 14 C -0.077 4.077 15 C -0.212 4.212 16 C 0.069 3.931 17 O -0.154 6.154 18 C -0.475 4.475 19 H 0.097 0.903 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.794 3.206 23 H -0.192 1.192 24 H -0.192 1.192 25 H -0.186 1.186 26 C -0.259 4.259 27 C -0.075 4.075 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.246 0.754 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.170 0.830 43 H 0.144 0.856 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.470 10.991 -21.080 24.920 hybrid contribution 1.108 -0.623 0.478 1.358 sum -6.362 10.368 -20.602 23.925 Atomic orbital electron populations 1.21521 0.93605 1.02476 1.01837 1.21706 0.98205 0.91992 1.06309 1.21405 0.82150 0.92743 0.74585 1.90671 1.56491 1.48236 1.51931 1.45963 1.06908 1.09487 1.74442 1.21236 0.92474 0.83148 1.01415 1.23768 0.93709 0.95988 0.95166 0.87472 1.23301 0.97613 0.95659 0.99962 1.23839 0.95019 0.91976 1.01682 1.68675 1.20902 1.00940 1.30567 1.21453 0.97166 0.92727 0.93532 1.19573 0.94155 1.01491 0.99278 1.20935 0.93283 0.97556 0.95940 1.20504 1.01227 1.02239 0.97235 1.19708 0.91227 0.93329 0.88803 1.83509 1.36782 1.62887 1.32230 1.20688 0.96111 1.30853 0.99823 0.90333 1.25291 1.04513 0.95488 0.93643 1.69732 1.39146 1.36623 1.11047 0.85207 0.77951 0.78515 0.78964 1.19164 1.19198 1.18596 1.21270 0.94808 1.07143 1.02641 1.20875 0.99081 0.95174 0.92355 0.93093 0.89946 0.93896 0.86302 0.87479 0.75377 0.93119 0.90898 0.88457 0.89725 0.89485 0.91083 0.89461 0.91273 0.83026 0.85556 0.90587 0.87897 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.20 71.98 0.66 -1.46 16 2 C -0.14 -1.94 6.42 29.85 0.19 -1.75 16 3 C 0.50 10.38 7.83 87.66 0.69 11.07 16 4 O -0.59 -17.49 15.98 -3.03 -0.05 -17.54 16 5 N -0.72 -11.80 5.50 -463.05 -2.55 -14.34 16 6 C 0.14 2.34 5.80 86.38 0.50 2.84 16 7 C 0.02 0.29 3.40 45.02 0.15 0.44 16 8 H 0.11 0.91 7.80 -2.39 -0.02 0.90 16 9 C -0.13 -1.53 7.84 31.24 0.24 -1.29 16 10 C 0.00 0.05 6.95 86.40 0.60 0.65 16 11 N -0.49 -8.58 5.94 -888.43 -5.27 -13.85 16 12 C 0.08 1.35 4.78 85.55 0.41 1.76 16 13 C -0.14 -3.80 5.12 -19.83 -0.10 -3.90 16 14 C -0.06 -1.60 8.97 22.25 0.20 -1.40 16 15 C -0.19 -7.01 9.99 22.39 0.22 -6.78 16 16 C 0.12 5.44 6.65 22.58 0.15 5.59 16 17 O -0.25 -13.35 8.59 -22.72 -0.20 -13.55 16 18 C -0.40 -23.57 9.95 67.92 0.68 -22.90 16 19 H 0.08 4.89 5.44 -2.91 -0.02 4.88 16 20 C 0.01 0.51 5.49 84.83 0.47 0.98 16 21 N -0.92 -55.54 13.96 21.61 0.30 -55.24 16 22 Si 0.97 45.42 28.62 68.60 1.96 47.39 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 26 C -0.24 -10.36 9.17 22.39 0.21 -10.15 16 27 C -0.06 -1.85 9.69 22.25 0.22 -1.63 16 28 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16 31 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.41 5.11 6.59 -92.71 -0.61 4.50 16 34 H 0.05 1.08 7.91 -2.39 -0.02 1.06 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.08 1.19 7.94 -2.39 -0.02 1.18 16 38 H 0.09 1.09 7.11 -2.39 -0.02 1.08 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.25 6.50 -2.39 -0.02 1.24 16 41 H 0.07 0.89 7.63 -2.39 -0.02 0.87 16 42 H 0.15 2.89 7.46 -2.91 -0.02 2.87 16 43 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 44 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 45 H 0.10 5.00 5.64 -2.91 -0.02 4.98 16 46 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -74.54 376.64 0.06 -74.48 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.38 Total: 20.59 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 5.48 Total: -27.94 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -7.52 Total: -83.43 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.24 Total: -31.08 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.96 Total: 47.39 kcal Total: -74.54 0.06 -74.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001392817190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.385 kcal (2) G-P(sol) polarization free energy of solvation -74.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds