Wall clock time and date at job start Tue Mar 31 2020 14:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47289 * 2 1 4 4 O 1.42899 * 109.47093 * 179.97438 * 3 2 1 5 5 C 1.35909 * 116.99676 * 179.97438 * 4 3 2 6 6 C 1.38847 * 119.98727 * 359.72120 * 5 4 3 7 7 C 1.38243 * 120.23684 * 179.76032 * 6 5 4 8 8 C 1.38011 * 120.21083 * 0.51933 * 7 6 5 9 9 C 1.39567 * 119.95869 * 359.74366 * 8 7 6 10 10 C 1.47861 * 120.11427 * 179.97438 * 9 8 7 11 11 O 1.21557 * 120.00269 * 180.02562 * 10 9 8 12 12 N 1.34779 * 120.00271 * 0.02562 * 10 9 8 13 13 C 1.46493 * 120.00200 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47178 * 176.04724 * 13 12 10 15 15 N 1.46503 * 115.55040 * 279.55712 * 14 13 12 16 16 C 1.36941 * 120.00101 * 294.63307 * 15 14 13 17 17 H 1.08000 * 119.99485 * 353.17058 * 16 15 14 18 18 C 1.38812 * 120.00145 * 173.16803 * 16 15 14 19 19 N 1.31615 * 120.00095 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99771 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47538 * 59.99848 * 20 18 16 22 22 H 1.48508 * 109.47046 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47288 * 299.99534 * 20 18 16 24 24 C 1.53001 * 117.49866 * 133.88539 * 14 13 12 25 25 C 1.52994 * 117.49969 * 65.22392 * 14 13 12 26 26 C 1.38452 * 119.98102 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47008 * 60.00307 * 1 2 3 28 28 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47490 * 300.00511 * 1 2 3 30 30 H 1.09002 * 109.47077 * 239.99161 * 2 1 3 31 31 H 1.09002 * 109.46624 * 120.00073 * 2 1 3 32 32 H 1.09000 * 109.47273 * 59.99356 * 3 2 1 33 33 H 1.09002 * 109.46845 * 299.99793 * 3 2 1 34 34 H 1.07999 * 119.88229 * 0.02562 * 6 5 4 35 35 H 1.08007 * 119.89675 * 180.25982 * 7 6 5 36 36 H 1.07996 * 120.02065 * 179.71646 * 8 7 6 37 37 H 0.97003 * 119.99680 * 359.97438 * 12 10 9 38 38 H 1.09000 * 109.47202 * 296.05125 * 13 12 10 39 39 H 1.09008 * 109.47321 * 56.04669 * 13 12 10 40 40 H 0.96997 * 120.00184 * 114.63146 * 15 14 13 41 41 H 0.96996 * 120.00324 * 180.02562 * 19 18 16 42 42 H 1.08997 * 117.50080 * 0.02562 * 24 14 13 43 43 H 1.09003 * 117.49692 * 145.01735 * 24 14 13 44 44 H 1.09001 * 117.50305 * 214.97598 * 25 14 13 45 45 H 1.08998 * 117.49969 * 359.97438 * 25 14 13 46 46 H 1.08008 * 120.10732 * 359.95710 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0860 2.6534 0.0001 6 6 3.3295 3.8177 -0.0067 7 6 3.9517 5.0522 -0.0022 8 6 5.3293 5.1355 -0.0017 9 6 6.0980 3.9707 -0.0003 10 6 7.5742 4.0560 -0.0003 11 8 8.2417 3.0401 0.0005 12 7 8.1797 5.2601 -0.0011 13 6 9.6421 5.3446 -0.0017 14 6 10.0683 6.8106 -0.1020 15 7 10.0382 7.3866 -1.4487 16 6 10.8883 6.9163 -2.4138 17 1 11.6545 6.2001 -2.1559 18 6 10.7652 7.3598 -3.7234 19 7 9.8311 8.2321 -4.0376 20 14 11.9244 6.7176 -5.0398 21 1 11.7848 5.2431 -5.1459 22 1 11.5870 7.3424 -6.3441 23 1 13.3235 7.0575 -4.6760 24 6 11.1650 7.2942 0.8488 25 6 9.7143 7.7308 1.0679 26 6 5.4687 2.7254 0.0012 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.2512 3.7587 -0.0113 35 1 3.3579 5.9543 -0.0034 36 1 5.8121 6.1015 -0.0028 37 1 7.6470 6.0708 -0.0021 38 1 10.0313 4.9155 0.9216 39 1 10.0377 4.7921 -0.8540 40 1 9.4161 8.1012 -1.6569 41 1 9.7448 8.5418 -4.9528 42 1 11.5833 6.5678 1.5456 43 1 11.8641 8.0411 0.4725 44 1 9.4596 8.7649 0.8357 45 1 9.1776 7.2919 1.9089 46 1 6.0583 1.8205 0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754516705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:17 Heat of formation + Delta-G solvation = -38.665597 kcal Electronic energy + Delta-G solvation = -25696.712643 eV Core-core repulsion = 21972.690345 eV Total energy + Delta-G solvation = -3724.022297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.52510 -40.56868 -39.07769 -38.18193 -35.42037 -34.92391 -34.73893 -32.28452 -31.64276 -31.10938 -28.06845 -27.48949 -25.94798 -24.63994 -23.46164 -23.23922 -22.39642 -21.33621 -20.78358 -19.54001 -19.11170 -17.73370 -17.42918 -17.26447 -17.16254 -16.76525 -16.39888 -16.27187 -15.83306 -15.48809 -15.07270 -14.97723 -14.91624 -14.64527 -14.62677 -13.89137 -13.63321 -13.56460 -13.30429 -13.07403 -12.92388 -12.85806 -12.75445 -12.33116 -12.29416 -12.26590 -12.23447 -11.84998 -11.78373 -11.76196 -11.53535 -11.21357 -10.94385 -10.61398 -10.24825 -9.95902 -9.30621 -9.02531 -7.97086 -5.25288 -0.24717 0.36111 1.44559 1.46967 1.52168 1.78733 1.93089 2.32022 2.52083 2.80637 3.08137 3.38077 3.63410 3.65686 3.75322 3.84316 3.94935 3.95546 4.06083 4.12724 4.19662 4.24656 4.29412 4.32144 4.46409 4.56309 4.56974 4.76953 4.80483 4.83785 4.86842 4.93286 5.05155 5.12709 5.18099 5.18445 5.19851 5.26650 5.32946 5.35135 5.37602 5.44417 5.54436 5.63314 6.26716 6.38582 6.52739 7.15389 7.32711 8.06213 8.30180 9.24982 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.002573 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.983123 B =10881.214696 C =11597.021824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.049 3.951 4 O -0.334 6.334 5 C 0.115 3.885 6 C -0.176 4.176 7 C -0.077 4.077 8 C -0.122 4.122 9 C -0.107 4.107 10 C 0.548 3.452 11 O -0.587 6.587 12 N -0.694 5.694 13 C 0.156 3.844 14 C 0.097 3.903 15 N -0.697 5.697 16 C -0.232 4.232 17 H 0.068 0.932 18 C -0.068 4.068 19 N -0.962 5.962 20 Si 0.962 3.038 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.277 1.277 24 C -0.182 4.182 25 C -0.152 4.152 26 C -0.120 4.120 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.410 0.590 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.492 -7.932 13.391 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.025 4.025 4 O -0.249 6.249 5 C 0.070 3.930 6 C -0.195 4.195 7 C -0.095 4.095 8 C -0.141 4.141 9 C -0.110 4.110 10 C 0.337 3.663 11 O -0.469 6.469 12 N -0.344 5.344 13 C 0.031 3.969 14 C 0.004 3.996 15 N -0.335 5.335 16 C -0.364 4.364 17 H 0.086 0.914 18 C -0.261 4.261 19 N -0.612 5.612 20 Si 0.792 3.208 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.203 1.203 24 C -0.222 4.222 25 C -0.189 4.189 26 C -0.139 4.139 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.181 0.819 35 H 0.187 0.813 36 H 0.162 0.838 37 H 0.248 0.752 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.211 0.789 41 H 0.060 0.940 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.798 -8.906 13.264 25.441 hybrid contribution 0.577 0.276 -1.320 1.467 sum -19.222 -8.630 11.944 24.220 Atomic orbital electron populations 1.21674 0.92522 1.03185 1.02882 1.21519 0.97356 0.94091 1.03249 1.23209 0.76506 1.00029 1.02784 1.86067 1.23419 1.26709 1.88682 1.18835 0.91281 0.85481 0.97399 1.21787 1.01687 0.91412 1.04608 1.21320 0.93588 0.98605 0.95995 1.21510 0.95049 0.97218 1.00345 1.19612 0.91599 0.94648 1.05144 1.18674 0.88332 0.83348 0.75964 1.90719 1.67257 1.36406 1.52485 1.45720 1.07802 1.07956 1.72905 1.21071 0.79387 0.96000 1.00480 1.20336 1.04743 0.90955 0.83551 1.41784 1.43923 1.42103 1.05702 1.19373 1.08593 1.19791 0.88613 0.91385 1.25431 1.00708 1.00826 0.99095 1.69764 1.36685 1.36177 1.18579 0.85381 0.79031 0.77520 0.78866 1.21357 1.21959 1.20284 1.23389 0.92336 1.03849 1.02674 1.23185 0.98101 0.99571 0.98050 1.20392 0.92497 0.97600 1.03449 0.91780 0.91188 0.91525 0.91594 0.91268 0.90286 0.90719 0.81874 0.81283 0.83770 0.75210 0.90665 0.94255 0.78856 0.94022 0.87503 0.90040 0.88586 0.86231 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 71.98 0.71 -0.34 16 2 C -0.12 -1.47 6.30 30.59 0.19 -1.27 16 3 C 0.05 0.67 4.74 71.98 0.34 1.01 16 4 O -0.33 -7.60 10.13 -92.53 -0.94 -8.54 16 5 C 0.12 2.79 6.68 22.47 0.15 2.94 16 6 C -0.18 -3.11 9.03 22.42 0.20 -2.90 16 7 C -0.08 -1.33 10.03 22.22 0.22 -1.10 16 8 C -0.12 -2.78 9.54 22.54 0.21 -2.57 16 9 C -0.11 -3.22 5.87 -20.10 -0.12 -3.34 16 10 C 0.55 20.11 7.77 86.79 0.67 20.78 16 11 O -0.59 -26.06 16.35 -3.90 -0.06 -26.12 16 12 N -0.69 -23.35 5.47 -465.95 -2.55 -25.90 16 13 C 0.16 5.86 5.72 86.38 0.49 6.35 16 14 C 0.10 3.58 2.16 3.60 0.01 3.58 16 15 N -0.70 -33.35 5.49 -303.35 -1.66 -35.02 16 16 C -0.23 -12.71 9.56 84.03 0.80 -11.91 16 17 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 19 N -0.96 -57.57 13.07 21.65 0.28 -57.29 16 20 Si 0.96 46.90 29.55 68.60 2.03 48.92 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 C -0.18 -5.81 10.11 30.62 0.31 -5.50 16 25 C -0.15 -4.24 10.07 30.62 0.31 -3.93 16 26 C -0.12 -3.61 9.53 22.63 0.22 -3.39 16 27 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.81 7.67 -2.39 -0.02 0.79 16 33 H 0.07 0.84 7.64 -2.39 -0.02 0.82 16 34 H 0.16 1.72 6.28 -2.91 -0.02 1.70 16 35 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.14 2.79 6.40 -2.91 -0.02 2.78 16 37 H 0.41 11.81 6.44 -92.71 -0.60 11.21 16 38 H 0.08 2.55 7.94 -2.39 -0.02 2.53 16 39 H 0.04 1.80 7.79 -2.38 -0.02 1.78 16 40 H 0.38 19.20 8.05 -92.71 -0.75 18.45 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.11 2.91 8.08 -2.39 -0.02 2.89 16 43 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.12 4.03 7.65 -2.91 -0.02 4.01 16 Total: -1.00 -72.76 387.19 1.95 -70.81 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.35 Total: 38.14 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 5.20 Total: -5.00 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -3.93 Total: -118.20 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.00 Total: -34.66 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -72.76 1.95 -70.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754516705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.144 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds