Wall clock time and date at job start Tue Mar 31 2020 14:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53006 * 109.46827 * 2 1 4 4 O 1.45199 * 109.47452 * 120.00215 * 2 1 3 5 5 C 1.34228 * 116.99888 * 89.99405 * 4 2 1 6 6 O 1.20824 * 120.00015 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99597 * 179.97438 * 5 4 2 8 8 C 1.53122 * 109.52002 * 180.02562 * 7 5 4 9 9 C 1.53045 * 109.27757 * 182.44239 * 8 7 5 10 10 N 1.46847 * 109.52035 * 59.18224 * 9 8 7 11 11 C 1.38824 * 110.99784 * 174.16179 * 10 9 8 12 12 C 1.39790 * 119.58637 * 203.52826 * 11 10 9 13 13 C 1.38601 * 119.49330 * 179.78616 * 12 11 10 14 14 C 1.38390 * 118.67758 * 0.48070 * 13 12 11 15 15 C 1.40550 * 119.14951 * 359.74407 * 14 13 12 16 16 C 1.41315 * 119.78522 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00025 * 332.41975 * 16 15 14 18 18 C 1.40024 * 120.00327 * 152.41361 * 16 15 14 19 19 N 1.30744 * 120.00308 * 170.44460 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 350.44089 * 18 16 15 21 21 H 1.48493 * 109.47192 * 86.47006 * 20 18 16 22 22 H 1.48501 * 109.46944 * 206.46804 * 20 18 16 23 23 H 1.48500 * 109.47475 * 326.46624 * 20 18 16 24 24 N 1.31962 * 119.58355 * 23.80023 * 11 10 9 25 25 C 1.46846 * 111.19722 * 298.25321 * 10 9 8 26 26 C 1.53041 * 109.52114 * 61.74653 * 25 10 9 27 27 H 1.09001 * 109.46610 * 299.99374 * 1 2 3 28 28 H 1.08994 * 109.47210 * 60.00147 * 1 2 3 29 29 H 1.08997 * 109.46579 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46610 * 240.00626 * 2 1 3 31 31 H 1.08998 * 109.46866 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47105 * 299.99916 * 3 2 1 33 33 H 1.08995 * 109.46892 * 60.00457 * 3 2 1 34 34 H 1.08997 * 109.57982 * 300.16349 * 7 5 4 35 35 H 1.08997 * 109.50119 * 62.50761 * 8 7 5 36 36 H 1.08998 * 109.50509 * 302.38341 * 8 7 5 37 37 H 1.09000 * 109.46080 * 299.16751 * 9 8 7 38 38 H 1.09000 * 109.46189 * 179.19872 * 9 8 7 39 39 H 1.08002 * 120.25222 * 359.97438 * 12 11 10 40 40 H 1.07998 * 120.65794 * 180.22686 * 13 12 11 41 41 H 1.08000 * 120.42079 * 179.76677 * 14 13 12 42 42 H 0.97000 * 120.00086 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.46078 * 181.76093 * 25 10 9 44 44 H 1.08997 * 109.46761 * 301.72877 * 25 10 9 45 45 H 1.08996 * 109.50157 * 180.87340 * 26 25 10 46 46 H 1.09000 * 109.50075 * 60.75963 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0142 -0.6845 1.1855 5 6 2.2172 -2.0075 1.0850 6 8 1.9982 -2.5748 0.0409 7 6 2.7195 -2.7851 2.2741 8 6 2.8650 -4.2616 1.8956 9 6 3.3167 -5.0559 3.1233 10 7 2.3277 -4.9028 4.1979 11 6 2.6395 -5.7143 5.2802 12 6 1.6297 -6.1016 6.1660 13 6 1.9424 -6.9155 7.2434 14 6 3.2564 -7.3141 7.4154 15 6 4.2275 -6.8874 6.4932 16 6 5.5733 -7.2868 6.6556 17 1 5.9546 -7.5121 7.6406 18 6 6.4124 -7.3906 5.5395 19 7 7.6964 -7.5760 5.7019 20 14 5.6973 -7.2643 3.8184 21 1 5.6262 -5.8369 3.4154 22 1 6.5640 -8.0047 2.8667 23 1 4.3332 -7.8510 3.8048 24 7 3.8863 -6.1060 5.4630 25 6 2.2053 -3.4989 4.6108 26 6 1.7204 -2.6582 3.4275 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.6873 -2.3921 2.5853 35 1 3.6070 -4.3628 1.1036 36 1 1.9056 -4.6443 1.5473 37 1 4.2826 -4.6817 3.4626 38 1 3.4076 -6.1099 2.8607 39 1 0.6132 -5.7717 6.0102 40 1 1.1764 -7.2290 7.9372 41 1 3.5321 -7.9451 8.2473 42 1 8.2776 -7.6482 4.9287 43 1 1.4889 -3.4221 5.4288 44 1 3.1764 -3.1321 4.9433 45 1 1.6446 -1.6138 3.7301 46 1 0.7431 -3.0157 3.1035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771883082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:40 Heat of formation + Delta-G solvation = -63.566736 kcal Electronic energy + Delta-G solvation = -27182.468613 eV Core-core repulsion = 23457.366522 eV Total energy + Delta-G solvation = -3725.102092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.89539 -39.57815 -37.79526 -36.80433 -34.08631 -33.45762 -32.96522 -31.32749 -30.62063 -29.43299 -27.62624 -26.18673 -25.30031 -23.26227 -22.53163 -21.60607 -20.93266 -20.49433 -19.55835 -17.91297 -17.68284 -16.98010 -16.33819 -16.11794 -15.01809 -14.93899 -14.70422 -14.68644 -14.52291 -14.16029 -13.84480 -13.61925 -13.26730 -13.11728 -12.94553 -12.64624 -12.63711 -12.51321 -12.35633 -12.05213 -11.99601 -11.51920 -11.42203 -11.22846 -11.16265 -10.92239 -10.86713 -10.72684 -10.61479 -10.47621 -10.41612 -10.20973 -9.98992 -9.26505 -8.74738 -8.48322 -7.98688 -7.40172 -6.89994 -4.69062 2.13253 2.37882 2.51419 2.57929 3.31034 3.37868 3.47739 4.13748 4.22797 4.42905 4.47353 4.50994 4.58468 4.69855 4.75139 4.81974 5.11826 5.18264 5.25244 5.37226 5.42330 5.43181 5.49844 5.52340 5.61163 5.70061 5.71503 5.80685 5.81743 5.90733 5.93359 5.98707 6.07290 6.19367 6.25428 6.35849 6.39187 6.51872 6.56132 6.62655 7.07770 7.17517 7.35644 7.46612 7.62796 7.68394 7.94080 8.18406 8.56370 8.61777 9.47093 10.05062 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.003484 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.106584 B = 8034.735708 C = 8931.662973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.077 3.923 3 C -0.149 4.149 4 O -0.352 6.352 5 C 0.470 3.530 6 O -0.507 6.507 7 C -0.082 4.082 8 C -0.102 4.102 9 C 0.055 3.945 10 N -0.483 5.483 11 C 0.328 3.672 12 C -0.285 4.285 13 C -0.045 4.045 14 C -0.262 4.262 15 C 0.265 3.735 16 C -0.425 4.425 17 H 0.097 0.903 18 C 0.089 3.911 19 N -0.808 5.808 20 Si 0.965 3.035 21 H -0.257 1.257 22 H -0.320 1.320 23 H -0.269 1.269 24 N -0.585 5.585 25 C 0.066 3.934 26 C -0.103 4.103 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.287 0.713 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 14.377 -8.887 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.206 4.206 4 O -0.270 6.270 5 C 0.313 3.687 6 O -0.394 6.394 7 C -0.101 4.101 8 C -0.140 4.140 9 C -0.073 4.073 10 N -0.204 5.204 11 C 0.095 3.905 12 C -0.310 4.310 13 C -0.069 4.069 14 C -0.284 4.284 15 C 0.140 3.860 16 C -0.456 4.456 17 H 0.114 0.886 18 C -0.133 4.133 19 N -0.432 5.432 20 Si 0.798 3.202 21 H -0.183 1.183 22 H -0.251 1.251 23 H -0.194 1.194 24 N -0.307 5.307 25 C -0.061 4.061 26 C -0.141 4.141 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.217 14.315 -9.987 20.225 hybrid contribution -0.108 -0.100 0.021 0.149 sum -10.325 14.215 -9.966 20.199 Atomic orbital electron populations 1.22203 0.94324 1.03148 1.02995 1.22721 0.94639 0.93068 0.87290 1.21885 1.02133 0.93524 1.03098 1.86590 1.76968 1.22482 1.40917 1.23864 0.73862 0.80952 0.90049 1.90638 1.47884 1.70019 1.30886 1.21235 1.01408 0.95612 0.91865 1.21601 1.03436 0.91064 0.97919 1.22419 0.94300 1.00768 0.89782 1.59653 1.46730 1.06562 1.07497 1.19491 0.89027 0.93043 0.88914 1.20726 0.98183 1.11246 1.00844 1.20920 0.95805 0.94632 0.95534 1.21738 0.93204 1.08606 1.04874 1.18399 0.93692 0.87369 0.86573 1.19388 0.91767 1.37910 0.96559 0.88555 1.26238 0.93970 0.89551 1.03499 1.69632 1.04825 1.34122 1.34583 0.85447 0.77486 0.79423 0.77878 1.18303 1.25108 1.19431 1.67363 1.17609 1.19449 1.26290 1.22063 1.00993 0.86265 0.96767 1.21595 0.98429 1.00522 0.93581 0.91466 0.90831 0.91905 0.89861 0.91684 0.90486 0.91327 0.87419 0.90677 0.90215 0.91744 0.90253 0.87544 0.87610 0.87328 0.90335 0.89693 0.93707 0.90023 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.55 37.16 0.35 -1.04 16 2 C 0.08 0.74 3.18 -26.72 -0.09 0.65 16 3 C -0.15 -1.03 9.57 37.16 0.36 -0.68 16 4 O -0.35 -4.13 9.81 -39.25 -0.39 -4.51 16 5 C 0.47 6.27 7.23 36.00 0.26 6.53 16 6 O -0.51 -7.92 15.20 -18.75 -0.28 -8.20 16 7 C -0.08 -1.08 2.70 -91.65 -0.25 -1.33 16 8 C -0.10 -1.55 4.68 -26.65 -0.12 -1.68 16 9 C 0.05 1.01 3.55 -3.83 -0.01 1.00 16 10 N -0.48 -9.00 4.61 -173.19 -0.80 -9.80 16 11 C 0.33 7.17 5.85 -155.32 -0.91 6.26 16 12 C -0.29 -5.84 9.74 -38.87 -0.38 -6.22 16 13 C -0.04 -0.90 10.15 -39.39 -0.40 -1.30 16 14 C -0.26 -5.99 9.83 -38.65 -0.38 -6.37 16 15 C 0.27 6.78 5.90 -85.00 -0.50 6.28 16 16 C -0.42 -11.52 9.67 -37.74 -0.37 -11.88 16 17 H 0.10 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.09 2.37 5.51 -17.35 -0.10 2.28 16 19 N -0.81 -21.75 13.92 55.55 0.77 -20.97 16 20 Si 0.97 23.20 22.84 -169.99 -3.88 19.32 16 21 H -0.26 -5.90 4.90 56.52 0.28 -5.62 16 22 H -0.32 -7.54 7.11 56.52 0.40 -7.13 16 23 H -0.27 -6.79 6.70 56.52 0.38 -6.41 16 24 N -0.59 -14.37 4.96 -10.33 -0.05 -14.42 16 25 C 0.07 1.00 5.37 -3.83 -0.02 0.98 16 26 C -0.10 -1.27 5.31 -26.65 -0.14 -1.41 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.87 7.16 -51.93 -0.37 0.50 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 37 H 0.06 1.31 5.96 -51.93 -0.31 1.00 16 38 H 0.08 1.63 5.93 -51.93 -0.31 1.32 16 39 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.11 2.32 8.06 -52.49 -0.42 1.89 16 42 H 0.29 7.06 8.29 -40.82 -0.34 6.72 16 43 H 0.08 1.22 7.88 -51.92 -0.41 0.81 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -29.54 362.92 -9.29 -38.83 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.44 Total: 2.22 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.69 Total: -7.93 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.08 Total: -45.20 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.67 Total: -12.71 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -3.88 Total: 19.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.54 -9.29 -38.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771883082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.732 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds