Wall clock time and date at job start Tue Mar 31 2020 14:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53006 * 109.46827 * 2 1 4 4 O 1.45199 * 109.47452 * 120.00215 * 2 1 3 5 5 C 1.34228 * 116.99888 * 89.99405 * 4 2 1 6 6 O 1.20824 * 120.00015 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99597 * 179.97438 * 5 4 2 8 8 C 1.53122 * 109.52002 * 180.02562 * 7 5 4 9 9 C 1.53045 * 109.27757 * 182.44239 * 8 7 5 10 10 N 1.46847 * 109.52035 * 59.18224 * 9 8 7 11 11 C 1.38824 * 110.99784 * 174.16179 * 10 9 8 12 12 C 1.39790 * 119.58637 * 203.52826 * 11 10 9 13 13 C 1.38601 * 119.49330 * 179.78616 * 12 11 10 14 14 C 1.38390 * 118.67758 * 0.48070 * 13 12 11 15 15 C 1.40550 * 119.14951 * 359.74407 * 14 13 12 16 16 C 1.41315 * 119.78522 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00025 * 332.41975 * 16 15 14 18 18 C 1.40024 * 120.00327 * 152.41361 * 16 15 14 19 19 N 1.30744 * 120.00308 * 170.44460 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 350.44089 * 18 16 15 21 21 H 1.48493 * 109.47192 * 86.47006 * 20 18 16 22 22 H 1.48501 * 109.46944 * 206.46804 * 20 18 16 23 23 H 1.48500 * 109.47475 * 326.46624 * 20 18 16 24 24 N 1.31962 * 119.58355 * 23.80023 * 11 10 9 25 25 C 1.46846 * 111.19722 * 298.25321 * 10 9 8 26 26 C 1.53041 * 109.52114 * 61.74653 * 25 10 9 27 27 H 1.09001 * 109.46610 * 299.99374 * 1 2 3 28 28 H 1.08994 * 109.47210 * 60.00147 * 1 2 3 29 29 H 1.08997 * 109.46579 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46610 * 240.00626 * 2 1 3 31 31 H 1.08998 * 109.46866 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47105 * 299.99916 * 3 2 1 33 33 H 1.08995 * 109.46892 * 60.00457 * 3 2 1 34 34 H 1.08997 * 109.57982 * 300.16349 * 7 5 4 35 35 H 1.08997 * 109.50119 * 62.50761 * 8 7 5 36 36 H 1.08998 * 109.50509 * 302.38341 * 8 7 5 37 37 H 1.09000 * 109.46080 * 299.16751 * 9 8 7 38 38 H 1.09000 * 109.46189 * 179.19872 * 9 8 7 39 39 H 1.08002 * 120.25222 * 359.97438 * 12 11 10 40 40 H 1.07998 * 120.65794 * 180.22686 * 13 12 11 41 41 H 1.08000 * 120.42079 * 179.76677 * 14 13 12 42 42 H 0.97000 * 120.00086 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.46078 * 181.76093 * 25 10 9 44 44 H 1.08997 * 109.46761 * 301.72877 * 25 10 9 45 45 H 1.08996 * 109.50157 * 180.87340 * 26 25 10 46 46 H 1.09000 * 109.50075 * 60.75963 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0142 -0.6845 1.1855 5 6 2.2172 -2.0075 1.0850 6 8 1.9982 -2.5748 0.0409 7 6 2.7195 -2.7851 2.2741 8 6 2.8650 -4.2616 1.8956 9 6 3.3167 -5.0559 3.1233 10 7 2.3277 -4.9028 4.1979 11 6 2.6395 -5.7143 5.2802 12 6 1.6297 -6.1016 6.1660 13 6 1.9424 -6.9155 7.2434 14 6 3.2564 -7.3141 7.4154 15 6 4.2275 -6.8874 6.4932 16 6 5.5733 -7.2868 6.6556 17 1 5.9546 -7.5121 7.6406 18 6 6.4124 -7.3906 5.5395 19 7 7.6964 -7.5760 5.7019 20 14 5.6973 -7.2643 3.8184 21 1 5.6262 -5.8369 3.4154 22 1 6.5640 -8.0047 2.8667 23 1 4.3332 -7.8510 3.8048 24 7 3.8863 -6.1060 5.4630 25 6 2.2053 -3.4989 4.6108 26 6 1.7204 -2.6582 3.4275 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.6873 -2.3921 2.5853 35 1 3.6070 -4.3628 1.1036 36 1 1.9056 -4.6443 1.5473 37 1 4.2826 -4.6817 3.4626 38 1 3.4076 -6.1099 2.8607 39 1 0.6132 -5.7717 6.0102 40 1 1.1764 -7.2290 7.9372 41 1 3.5321 -7.9451 8.2473 42 1 8.2776 -7.6482 4.9287 43 1 1.4889 -3.4221 5.4288 44 1 3.1764 -3.1321 4.9433 45 1 1.6446 -1.6138 3.7301 46 1 0.7431 -3.0157 3.1035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771883082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:39 Heat of formation + Delta-G solvation = -79.781879 kcal Electronic energy + Delta-G solvation = -27183.171754 eV Core-core repulsion = 23457.366522 eV Total energy + Delta-G solvation = -3725.805233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96490 -41.10087 -39.21173 -37.87914 -35.73720 -34.83900 -33.96798 -33.04814 -31.96642 -31.11271 -28.20045 -27.85664 -26.75887 -24.61210 -23.66853 -23.11521 -22.35736 -21.65974 -20.76986 -19.62464 -18.92402 -18.46355 -17.41240 -17.17276 -16.73356 -16.47296 -16.42148 -16.12586 -15.51448 -15.34289 -14.93902 -14.85348 -14.67668 -14.50903 -14.30330 -14.05060 -13.93773 -13.56475 -13.22591 -13.16630 -13.11454 -12.88533 -12.75050 -12.72052 -12.56804 -12.36445 -12.22666 -12.04203 -11.93239 -11.87011 -11.57258 -11.54052 -11.30675 -11.19630 -10.42357 -10.21094 -9.81799 -9.11383 -8.87462 -6.69124 0.59591 0.80789 1.10249 1.33926 1.44574 1.52759 1.59426 2.26845 2.56725 2.70474 3.39442 3.48552 3.62857 3.66531 3.81410 3.95236 3.99724 4.07300 4.15152 4.18781 4.29034 4.35537 4.47332 4.51673 4.64654 4.67456 4.69541 4.72667 4.76520 4.76935 4.79561 4.83367 4.84809 4.88599 5.02623 5.04888 5.12835 5.20321 5.22292 5.26111 5.48027 5.50220 5.71364 5.80172 5.91233 6.05042 6.29184 6.64144 6.68667 6.73017 7.63480 8.12049 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.003484 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.106584 B = 8034.735708 C = 8931.662973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.068 3.932 3 C -0.144 4.144 4 O -0.351 6.351 5 C 0.478 3.522 6 O -0.534 6.534 7 C -0.081 4.081 8 C -0.093 4.093 9 C 0.059 3.941 10 N -0.481 5.481 11 C 0.310 3.690 12 C -0.267 4.267 13 C -0.034 4.034 14 C -0.278 4.278 15 C 0.250 3.750 16 C -0.463 4.463 17 H 0.072 0.928 18 C 0.059 3.941 19 N -0.845 5.845 20 Si 1.011 2.989 21 H -0.247 1.247 22 H -0.315 1.315 23 H -0.289 1.289 24 N -0.602 5.602 25 C 0.064 3.936 26 C -0.091 4.091 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.141 0.859 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.293 0.707 43 H 0.100 0.900 44 H 0.034 0.966 45 H 0.110 0.890 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.809 16.818 -9.512 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 C -0.201 4.201 4 O -0.268 6.268 5 C 0.322 3.678 6 O -0.423 6.423 7 C -0.100 4.100 8 C -0.131 4.131 9 C -0.069 4.069 10 N -0.202 5.202 11 C 0.078 3.922 12 C -0.291 4.291 13 C -0.059 4.059 14 C -0.300 4.300 15 C 0.123 3.877 16 C -0.496 4.496 17 H 0.090 0.910 18 C -0.158 4.158 19 N -0.472 5.472 20 Si 0.843 3.157 21 H -0.172 1.172 22 H -0.246 1.246 23 H -0.217 1.217 24 N -0.324 5.324 25 C -0.062 4.062 26 C -0.128 4.128 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.134 0.866 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.052 0.948 45 H 0.128 0.872 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.438 16.797 -10.611 23.986 hybrid contribution 0.603 -0.756 0.250 0.999 sum -12.835 16.041 -10.362 23.009 Atomic orbital electron populations 1.22200 0.93208 1.02375 1.04532 1.23043 0.95643 0.94043 0.85915 1.21905 1.01940 0.91784 1.04507 1.86574 1.76696 1.21468 1.42041 1.23712 0.73225 0.81455 0.89419 1.90636 1.49183 1.70672 1.31851 1.21181 1.02356 0.94157 0.92324 1.21463 1.03217 0.92226 0.96201 1.22278 0.93717 0.99780 0.91113 1.59791 1.45842 1.08179 1.06364 1.20043 0.88605 0.93464 0.90082 1.21232 0.99281 1.09092 0.99475 1.21391 0.95512 0.93149 0.95818 1.21938 0.94142 1.09134 1.04758 1.18523 0.93701 0.87645 0.87832 1.19359 0.93352 1.41066 0.95819 0.90998 1.26720 0.94173 0.89445 1.05456 1.69649 1.05414 1.36747 1.35388 0.84797 0.75608 0.79730 0.75592 1.17199 1.24588 1.21655 1.67278 1.19457 1.19477 1.26180 1.22216 1.01028 0.84350 0.98564 1.21550 0.97942 1.01527 0.91819 0.90527 0.88748 0.93761 0.91184 0.92031 0.88321 0.90655 0.86548 0.90493 0.90348 0.93762 0.92739 0.84168 0.83130 0.86592 0.89708 0.88208 0.94764 0.87174 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.55 71.99 0.69 -1.62 16 2 C 0.07 1.14 3.18 30.60 0.10 1.23 16 3 C -0.14 -1.59 9.57 71.98 0.69 -0.90 16 4 O -0.35 -7.35 9.81 -51.40 -0.50 -7.86 16 5 C 0.48 11.80 7.23 71.23 0.51 12.32 16 6 O -0.53 -16.02 15.20 21.97 0.33 -15.68 16 7 C -0.08 -1.95 2.70 -11.46 -0.03 -1.99 16 8 C -0.09 -2.72 4.68 30.65 0.14 -2.58 16 9 C 0.06 2.15 3.55 86.33 0.31 2.46 16 10 N -0.48 -16.98 4.61 -701.86 -3.24 -20.22 16 11 C 0.31 13.03 5.85 133.41 0.78 13.81 16 12 C -0.27 -9.93 9.74 22.73 0.22 -9.71 16 13 C -0.03 -1.27 10.15 22.39 0.23 -1.05 16 14 C -0.28 -12.47 9.83 22.87 0.22 -12.24 16 15 C 0.25 12.98 5.90 40.18 0.24 13.21 16 16 C -0.46 -26.39 9.67 23.46 0.23 -26.16 16 17 H 0.07 4.28 8.06 -2.91 -0.02 4.26 16 18 C 0.06 3.29 5.51 85.29 0.47 3.76 16 19 N -0.85 -47.69 13.92 21.84 0.30 -47.39 16 20 Si 1.01 49.61 22.84 68.60 1.57 51.18 16 21 H -0.25 -11.45 4.90 99.48 0.49 -10.97 16 22 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 23 H -0.29 -14.98 6.70 99.48 0.67 -14.32 16 24 N -0.60 -29.58 4.96 -186.59 -0.93 -30.51 16 25 C 0.06 1.77 5.37 86.33 0.46 2.23 16 26 C -0.09 -1.92 5.31 30.65 0.16 -1.76 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.37 7.16 -2.39 -0.02 1.36 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 37 H 0.04 1.79 5.96 -2.39 -0.01 1.78 16 38 H 0.05 2.25 5.93 -2.39 -0.01 2.23 16 39 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 40 H 0.15 4.27 8.06 -2.91 -0.02 4.24 16 41 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 42 H 0.29 15.05 8.29 -92.71 -0.77 14.28 16 43 H 0.10 2.46 7.88 -2.38 -0.02 2.44 16 44 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 46 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -66.55 362.92 3.66 -62.89 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.70 Total: 16.56 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 5.42 Total: -8.97 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -3.86 Total: -98.11 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.17 Total: -23.54 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.57 Total: 51.18 kcal Total: -66.55 3.66 -62.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771883082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.890 kcal (2) G-P(sol) polarization free energy of solvation -66.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds