Wall clock time and date at job start Tue Mar 31 2020 12:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47152 * 2 1 4 4 C 1.53001 * 109.46802 * 240.00261 * 2 1 3 5 5 N 1.46503 * 109.47412 * 64.99957 * 4 2 1 6 6 C 1.34779 * 119.99980 * 179.97438 * 5 4 2 7 7 O 1.21589 * 119.99789 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99951 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00127 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47183 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93216 * 269.73065 * 10 9 8 12 12 C 1.38100 * 120.06817 * 179.72395 * 11 10 9 13 13 C 1.38872 * 119.92963 * 0.57230 * 12 11 10 14 14 O 1.35750 * 120.07142 * 179.68168 * 13 12 11 15 15 C 1.34825 * 117.00454 * 174.47969 * 14 13 12 16 16 H 1.08003 * 119.99855 * 5.06546 * 15 14 13 17 17 C 1.38657 * 120.00299 * 185.05466 * 15 14 13 18 18 N 1.31557 * 119.99732 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.47064 * 90.00254 * 19 17 15 21 21 H 1.48493 * 109.47320 * 209.99964 * 19 17 15 22 22 H 1.48505 * 109.47137 * 330.00458 * 19 17 15 23 23 C 1.38886 * 119.86377 * 359.69688 * 13 12 11 24 24 C 1.38101 * 119.92828 * 0.02562 * 23 13 12 25 25 C 1.52992 * 109.46978 * 120.00470 * 2 1 3 26 26 C 1.53002 * 117.49788 * 248.62259 * 25 2 1 27 27 C 1.53004 * 60.00112 * 252.51149 * 26 25 2 28 28 H 1.09003 * 109.46904 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47505 * 299.99995 * 1 2 3 30 30 H 1.09005 * 109.47238 * 60.00137 * 1 2 3 31 31 H 1.09008 * 109.46857 * 184.99963 * 4 2 1 32 32 H 1.09001 * 109.47520 * 304.99531 * 4 2 1 33 33 H 0.96999 * 119.99959 * 0.02562 * 5 4 2 34 34 H 0.97006 * 119.99534 * 0.02562 * 8 6 5 35 35 H 1.08999 * 109.47142 * 300.00002 * 9 8 6 36 36 H 1.09004 * 109.46955 * 59.99920 * 9 8 6 37 37 H 1.08005 * 119.96198 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.03522 * 180.26900 * 12 11 10 39 39 H 0.97000 * 119.99874 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.03164 * 179.97438 * 23 13 12 41 41 H 1.07996 * 119.96395 * 179.97438 * 24 23 13 42 42 H 1.08998 * 115.55313 * 34.32813 * 25 2 1 43 43 H 1.09000 * 117.49761 * 359.97438 * 26 25 2 44 44 H 1.08996 * 117.50193 * 145.02103 * 26 25 2 45 45 H 1.08998 * 117.49537 * 252.51161 * 27 26 25 46 46 H 1.08995 * 117.50090 * 107.48878 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6523 0.0354 -2.4425 6 6 1.9963 -0.4130 -3.6660 7 8 2.6279 -1.4458 -3.7796 8 7 1.6402 0.2833 -4.7636 9 6 2.0146 -0.2038 -6.0936 10 6 1.4992 0.7493 -7.1410 11 6 0.2418 0.5620 -7.6856 12 6 -0.2354 1.4370 -8.6416 13 6 0.5534 2.4988 -9.0645 14 8 0.0896 3.3569 -10.0087 15 6 0.8565 4.4293 -10.2910 16 1 1.8299 4.5322 -9.8346 17 6 0.3955 5.3999 -11.1673 18 7 -0.7904 5.2747 -11.7229 19 14 1.4583 6.8854 -11.5588 20 1 2.3152 6.5850 -12.7340 21 1 0.5886 8.0494 -11.8651 22 1 2.3161 7.2025 -10.3889 23 6 1.8179 2.6809 -8.5197 24 6 2.2872 1.8058 -7.5600 25 6 2.0399 -0.7213 1.2491 26 6 2.7418 0.1225 2.3151 27 6 3.5550 -0.8281 1.4342 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.1263 -0.7994 -1.2057 32 1 1.6054 -1.7198 -1.2953 33 1 1.1488 0.8595 -2.3518 34 1 1.1366 1.1074 -4.6729 35 1 3.1003 -0.2694 -6.1641 36 1 1.5797 -1.1902 -6.2549 37 1 -0.3690 -0.2670 -7.3600 38 1 -1.2192 1.2928 -9.0633 39 1 -1.1130 5.9539 -12.3357 40 1 2.4338 3.5055 -8.8470 41 1 3.2705 1.9466 -7.1363 42 1 1.4310 -1.5586 1.5901 43 1 2.8406 1.1915 2.1262 44 1 2.5946 -0.1594 3.3576 45 1 3.9427 -1.7355 1.8972 46 1 4.1884 -0.3846 0.6660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075976453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:40 Heat of formation + Delta-G solvation = -21.642923 kcal Electronic energy + Delta-G solvation = -25039.493168 eV Core-core repulsion = 21316.209029 eV Total energy + Delta-G solvation = -3723.284139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.07518 -39.13549 -38.51688 -36.90187 -35.19967 -34.29730 -32.42292 -32.05820 -30.28430 -29.77021 -26.88947 -25.73426 -24.59533 -23.21009 -22.62231 -22.05357 -20.89693 -20.62649 -20.31814 -18.39031 -18.06227 -17.06442 -16.45962 -16.06356 -15.56644 -15.19384 -14.76155 -14.70730 -14.57951 -14.31663 -14.10607 -13.87164 -13.69515 -13.36879 -13.17583 -12.91728 -12.78802 -12.68790 -12.15544 -11.97484 -11.80573 -11.67133 -11.65502 -11.39723 -11.27176 -10.96847 -10.79046 -10.68453 -10.59854 -10.49860 -10.36909 -10.14373 -9.43189 -9.27096 -8.91991 -8.72569 -8.28603 -7.33444 -6.53671 -4.12551 2.03071 2.12902 2.85076 3.08232 3.08830 3.13585 3.28266 3.39601 3.89683 4.14552 4.31227 4.41524 4.49711 4.58526 4.68495 4.82738 4.93709 5.01406 5.14832 5.16160 5.24429 5.27283 5.41031 5.43215 5.45455 5.51618 5.62806 5.67394 5.69609 5.74510 5.80029 5.82740 5.95302 5.98482 6.12029 6.35416 6.39704 6.58636 6.62899 6.80259 6.90293 6.99969 7.15801 7.27902 7.34843 7.71355 7.91080 8.07123 8.66000 8.91691 9.60029 10.63843 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020834 B = 0.001936 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.614787 B =14456.162894 C =14931.461040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 H 0.077 0.923 4 C 0.146 3.854 5 N -0.750 5.750 6 C 0.700 3.300 7 O -0.598 6.598 8 N -0.738 5.738 9 C 0.198 3.802 10 C -0.214 4.214 11 C -0.054 4.054 12 C -0.196 4.196 13 C 0.160 3.840 14 O -0.174 6.174 15 C -0.393 4.393 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.237 4.237 24 C -0.050 4.050 25 C -0.146 4.146 26 C -0.178 4.178 27 C -0.180 4.180 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.395 0.605 34 H 0.397 0.603 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.271 0.729 40 H 0.128 0.872 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -7.837 23.135 24.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.092 4.092 3 H 0.095 0.905 4 C 0.022 3.978 5 N -0.407 5.407 6 C 0.400 3.600 7 O -0.476 6.476 8 N -0.393 5.393 9 C 0.075 3.925 10 C -0.215 4.215 11 C -0.073 4.073 12 C -0.215 4.215 13 C 0.106 3.894 14 O -0.076 6.076 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.257 4.257 24 C -0.069 4.069 25 C -0.165 4.165 26 C -0.215 4.215 27 C -0.217 4.217 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.228 0.772 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.306 -8.672 22.688 24.667 hybrid contribution 0.092 1.580 -0.132 1.588 sum 4.398 -7.091 22.556 24.050 Atomic orbital electron populations 1.21823 0.94144 1.02392 1.01927 1.20960 0.96487 0.99277 0.92479 0.90485 1.21180 0.99908 0.94903 0.81854 1.45158 1.61873 1.28857 1.04801 1.16024 0.79980 0.83525 0.80451 1.90907 1.45720 1.25047 1.85963 1.45507 1.60615 1.28040 1.05183 1.19821 0.99101 0.95526 0.78044 1.19230 0.97138 1.00955 1.04178 1.20541 0.94392 0.97260 0.95060 1.20217 1.00784 0.97485 1.03020 1.19441 0.91791 0.90406 0.87795 1.83976 1.45661 1.31424 1.46565 1.21353 1.00093 0.97599 1.27891 0.88928 1.25320 0.96657 0.98585 0.95926 1.70037 1.17040 1.34675 1.27607 0.85695 0.78917 0.79519 0.79216 1.19793 1.20192 1.19146 1.21163 0.97673 1.03676 1.03157 1.20650 0.97939 0.93083 0.95238 1.22237 0.95170 1.02035 0.97074 1.23017 1.04573 0.97641 0.96263 1.22985 0.93740 1.01839 1.03137 0.92273 0.92269 0.92362 0.91648 0.91646 0.77155 0.76942 0.91813 0.91760 0.86942 0.86389 0.91886 0.85436 0.87391 0.87495 0.88768 0.88835 0.88690 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.05 37.16 0.34 -0.53 16 2 C -0.07 -0.47 2.58 -90.62 -0.23 -0.71 16 3 H 0.08 0.48 7.90 -51.93 -0.41 0.07 16 4 C 0.15 1.32 4.98 -4.04 -0.02 1.30 16 5 N -0.75 -7.42 5.29 -65.22 -0.34 -7.77 16 6 C 0.70 9.60 8.57 -86.92 -0.74 8.86 16 7 O -0.60 -10.60 16.34 5.29 0.09 -10.52 16 8 N -0.74 -9.41 5.55 -66.41 -0.37 -9.78 16 9 C 0.20 2.83 5.80 -5.19 -0.03 2.80 16 10 C -0.21 -3.42 5.25 -104.58 -0.55 -3.97 16 11 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 12 C -0.20 -3.93 9.99 -39.40 -0.39 -4.32 16 13 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 14 O -0.17 -4.80 9.76 0.06 0.00 -4.80 16 15 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 16 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16 19 Si 0.94 19.97 29.55 -169.99 -5.02 14.94 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 24 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 25 C -0.15 -0.90 5.15 -90.62 -0.47 -1.37 16 26 C -0.18 -1.01 10.18 -26.73 -0.27 -1.28 16 27 C -0.18 -1.13 9.67 -26.73 -0.26 -1.39 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.35 7.18 -51.93 -0.37 -0.03 16 31 H 0.07 0.66 7.13 -51.92 -0.37 0.29 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.39 2.95 7.67 -40.82 -0.31 2.64 16 34 H 0.40 4.40 8.48 -40.82 -0.35 4.06 16 35 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.11 0.62 8.11 -51.93 -0.42 0.20 16 43 H 0.09 0.51 8.05 -51.93 -0.42 0.10 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.10 0.65 7.58 -51.93 -0.39 0.25 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -31.75 385.17 -9.88 -41.63 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.97 Total: 8.66 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.82 Total: -14.34 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.04 Total: -41.38 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.09 Total: -15.32 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.75 -9.88 -41.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075976453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.986 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds