Wall clock time and date at job start Tue Mar 31 2020 12:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47695 * 2 1 4 4 C 1.50703 * 109.46847 * 120.00521 * 2 1 3 5 5 O 1.21285 * 120.00103 * 103.74534 * 4 2 1 6 6 N 1.34777 * 120.00116 * 283.73625 * 4 2 1 7 7 C 1.46500 * 119.99612 * 0.02562 * 6 4 2 8 8 C 1.46497 * 120.00445 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47226 * 270.00808 * 8 6 4 10 10 H 1.08004 * 120.00055 * 359.97438 * 9 8 6 11 11 C 1.37881 * 120.00162 * 179.97438 * 9 8 6 12 12 N 1.31508 * 119.99601 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00156 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47029 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47275 * 119.99888 * 13 11 9 16 16 H 1.48504 * 109.47183 * 240.00202 * 13 11 9 17 17 N 1.46898 * 109.46992 * 240.00064 * 2 1 3 18 18 C 1.46033 * 111.00041 * 77.98837 * 17 2 1 19 19 C 1.51349 * 113.62016 * 166.14809 * 18 17 2 20 20 O 1.43287 * 110.76073 * 65.18345 * 19 18 17 21 21 C 1.36116 * 115.33484 * 274.44910 * 20 19 18 22 22 C 1.38783 * 120.16575 * 250.16741 * 21 20 19 23 23 C 1.38196 * 119.66588 * 177.53575 * 22 21 20 24 24 C 1.38283 * 120.22387 * 0.05859 * 23 22 21 25 25 C 1.38394 * 120.10645 * 0.40140 * 24 23 22 26 26 C 1.37974 * 119.65786 * 359.94182 * 25 24 23 27 27 C 1.46718 * 111.00180 * 311.99404 * 17 2 1 28 28 H 1.08990 * 109.47470 * 185.95244 * 1 2 3 29 29 H 1.09002 * 109.46736 * 305.95501 * 1 2 3 30 30 H 1.09003 * 109.47066 * 65.94915 * 1 2 3 31 31 H 1.09003 * 109.47505 * 89.99642 * 7 6 4 32 32 H 1.09000 * 109.47223 * 209.99187 * 7 6 4 33 33 H 1.08997 * 109.47789 * 329.99704 * 7 6 4 34 34 H 1.09001 * 109.46816 * 30.00550 * 8 6 4 35 35 H 1.08996 * 109.47470 * 150.00219 * 8 6 4 36 36 H 0.96999 * 120.00177 * 179.97438 * 12 11 9 37 37 H 1.09005 * 108.65559 * 287.21809 * 18 17 2 38 38 H 1.09008 * 108.65515 * 45.07878 * 18 17 2 39 39 H 1.08998 * 109.21973 * 304.85245 * 19 18 17 40 40 H 1.09005 * 109.18314 * 185.49049 * 19 18 17 41 41 H 1.07998 * 120.16581 * 357.51542 * 22 21 20 42 42 H 1.08002 * 119.88735 * 180.02562 * 23 22 21 43 43 H 1.08006 * 119.94771 * 180.44903 * 24 23 22 44 44 H 1.07996 * 120.16911 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.58243 * 329.20133 * 27 17 2 46 46 H 1.09000 * 109.58478 * 89.61970 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4697 -1.8384 1.1433 6 7 1.9956 -0.0926 2.4276 7 6 1.4669 1.2696 2.5329 8 6 2.4843 -0.7831 3.6237 9 6 1.3510 -1.5427 4.2636 10 1 0.3650 -1.5137 3.8236 11 6 1.5726 -2.2747 5.4108 12 7 2.7733 -2.3104 5.9463 13 14 0.1677 -3.2157 6.2044 14 1 -1.0727 -3.0134 5.4134 15 1 0.5003 -4.6624 6.2431 16 1 -0.0417 -2.7187 7.5881 17 7 2.0196 -0.6925 -1.1994 18 6 1.9266 0.1684 -2.3754 19 6 2.7077 -0.3447 -3.5659 20 8 2.1581 -1.5802 -4.0397 21 6 2.6107 -2.6987 -3.4097 22 6 3.4436 -3.5861 -4.0768 23 6 3.9383 -4.6917 -3.4114 24 6 3.6050 -4.9144 -2.0879 25 6 2.7668 -4.0345 -1.4256 26 6 2.2674 -2.9346 -2.0922 27 6 1.3309 -1.9747 -1.3843 28 1 -0.3634 -1.0220 0.1066 29 1 -0.3633 0.6034 0.8319 30 1 -0.3633 0.4188 -0.9385 31 1 0.3947 1.2294 2.7252 32 1 1.9636 1.7899 3.3518 33 1 1.6488 1.8031 1.6000 34 1 3.2756 -1.4786 3.3438 35 1 2.8766 -0.0519 4.3305 36 1 2.9292 -2.8251 6.7535 37 1 0.8780 0.2589 -2.6592 38 1 2.3005 1.1582 -2.1134 39 1 3.7456 -0.5026 -3.2729 40 1 2.6692 0.3952 -4.3654 41 1 3.7034 -3.4137 -5.1107 42 1 4.5870 -5.3844 -3.9269 43 1 4.0000 -5.7760 -1.5700 44 1 2.5055 -4.2077 -0.3921 45 1 1.0539 -2.3840 -0.4128 46 1 0.4361 -1.8250 -1.9886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076849377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:20 Heat of formation + Delta-G solvation = -45.929944 kcal Electronic energy + Delta-G solvation = -27887.870193 eV Core-core repulsion = 24163.532890 eV Total energy + Delta-G solvation = -3724.337303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.75122 -40.67055 -38.55128 -37.81950 -36.46177 -34.77914 -33.10918 -32.58696 -31.17863 -29.74078 -28.73338 -27.46299 -27.05739 -25.76869 -24.27315 -23.33531 -22.34716 -21.70148 -19.79671 -18.80674 -18.67730 -18.14468 -17.54678 -17.03142 -16.68868 -16.39113 -16.25432 -16.10833 -15.88467 -15.40120 -15.17842 -14.86864 -14.69991 -14.42322 -14.15261 -13.99377 -13.65638 -13.41846 -13.38695 -13.20274 -13.10045 -13.04203 -12.80039 -12.67331 -12.53163 -12.47487 -12.31768 -12.20911 -12.07885 -11.82960 -11.66840 -11.01838 -10.65253 -10.38154 -9.78491 -9.46254 -9.37107 -9.25564 -8.22400 -6.36915 0.27537 0.41445 1.34237 1.36610 1.47981 1.90753 2.21097 2.39154 2.49485 2.86504 3.06893 3.19772 3.64635 3.81670 3.87388 3.94621 4.00282 4.11330 4.19768 4.22382 4.31036 4.39418 4.44059 4.51992 4.52239 4.63594 4.65912 4.70769 4.74413 4.78836 4.84393 4.92214 4.98581 5.03240 5.08010 5.14111 5.23962 5.41118 5.55040 5.58006 5.66817 5.82896 5.84737 5.91340 6.07229 6.12727 6.52445 6.71530 6.85070 7.29637 7.57293 8.84533 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.004017 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.114591 B = 6969.536964 C = 8149.542159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.082 3.918 3 H 0.134 0.866 4 C 0.500 3.500 5 O -0.574 6.574 6 N -0.611 5.611 7 C 0.079 3.921 8 C 0.263 3.737 9 C -0.537 4.537 10 H 0.051 0.949 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.965 3.035 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.269 1.269 17 N -0.541 5.541 18 C 0.025 3.975 19 C 0.065 3.935 20 O -0.339 6.339 21 C 0.088 3.912 22 C -0.139 4.139 23 C -0.104 4.104 24 C -0.138 4.138 25 C -0.103 4.103 26 C -0.112 4.112 27 C 0.115 3.885 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.098 0.902 34 H -0.005 1.005 35 H 0.022 0.978 36 H 0.266 0.734 37 H 0.052 0.948 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.141 0.859 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.137 0.863 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 7.142 -21.002 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.029 4.029 3 H 0.151 0.849 4 C 0.287 3.713 5 O -0.453 6.453 6 N -0.343 5.343 7 C -0.063 4.063 8 C 0.141 3.859 9 C -0.576 4.576 10 H 0.069 0.931 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.789 3.211 14 H -0.192 1.192 15 H -0.209 1.209 16 H -0.194 1.194 17 N -0.265 5.265 18 C -0.102 4.102 19 C -0.009 4.009 20 O -0.256 6.256 21 C 0.044 3.956 22 C -0.157 4.157 23 C -0.122 4.122 24 C -0.156 4.156 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.013 4.013 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.013 0.987 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.131 0.869 39 H 0.073 0.927 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.176 0.824 43 H 0.155 0.845 44 H 0.120 0.880 45 H 0.081 0.919 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.459 6.455 -20.971 21.990 hybrid contribution -1.102 -0.683 1.425 1.926 sum -2.561 5.771 -19.546 20.541 Atomic orbital electron populations 1.22342 0.93540 1.02462 1.04673 1.21632 0.95363 0.98547 0.87389 0.84896 1.21127 0.78542 0.86557 0.85035 1.90618 1.47720 1.20770 1.86168 1.48128 1.61756 1.16782 1.07645 1.21969 0.99325 0.81325 1.03715 1.18708 0.93837 0.91541 0.81792 1.21705 0.96090 1.30217 1.09553 0.93050 1.25823 0.98391 0.97263 0.97588 1.70056 1.22612 1.42428 1.21772 0.85413 0.79071 0.78092 0.78503 1.19207 1.20873 1.19369 1.60617 1.58783 1.03978 1.03145 1.22361 1.00898 0.97317 0.89631 1.22886 0.96705 0.84422 0.96884 1.86259 1.66760 1.13356 1.59194 1.18660 0.96466 0.89879 0.90583 1.21452 0.96544 0.96048 1.01660 1.21341 0.99515 0.97377 0.93935 1.21447 0.98492 0.99884 0.95765 1.21036 0.97462 0.94660 0.99000 1.20297 1.00062 0.96902 0.94103 1.20971 0.92911 0.88612 0.98762 0.94195 0.89950 0.88923 0.92319 0.91217 0.88342 0.98711 0.96043 0.92478 0.92955 0.86901 0.92741 0.84158 0.83128 0.82422 0.84545 0.88040 0.91896 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.36 71.98 0.60 -3.52 16 2 C 0.08 2.31 1.90 44.17 0.08 2.39 16 3 H 0.13 2.80 6.03 -2.39 -0.01 2.79 16 4 C 0.50 20.78 6.68 87.66 0.59 21.37 16 5 O -0.57 -29.73 14.14 -3.04 -0.04 -29.77 16 6 N -0.61 -25.78 2.86 -851.14 -2.43 -28.21 16 7 C 0.08 2.27 9.40 127.77 1.20 3.48 16 8 C 0.26 14.32 5.20 85.63 0.45 14.77 16 9 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 10 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 11 C 0.01 0.47 5.46 84.66 0.46 0.94 16 12 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 13 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 N -0.54 -15.64 4.06 -884.17 -3.59 -19.23 16 18 C 0.02 0.49 4.92 85.93 0.42 0.91 16 19 C 0.07 1.24 6.63 71.44 0.47 1.72 16 20 O -0.34 -8.52 10.04 -94.87 -0.95 -9.47 16 21 C 0.09 2.51 5.64 22.39 0.13 2.63 16 22 C -0.14 -3.31 10.01 22.39 0.22 -3.09 16 23 C -0.10 -2.36 10.03 22.27 0.22 -2.14 16 24 C -0.14 -3.86 10.05 22.32 0.22 -3.63 16 25 C -0.10 -3.58 9.70 22.24 0.22 -3.37 16 26 C -0.11 -3.74 5.46 -19.64 -0.11 -3.85 16 27 C 0.11 3.77 3.25 85.89 0.28 4.05 16 28 H 0.04 1.17 6.75 -2.39 -0.02 1.16 16 29 H 0.08 1.81 6.56 -2.39 -0.02 1.79 16 30 H 0.09 1.66 7.11 -2.39 -0.02 1.64 16 31 H 0.06 1.60 7.51 -2.39 -0.02 1.58 16 32 H 0.07 1.98 7.89 -2.39 -0.02 1.96 16 33 H 0.10 1.95 6.02 -2.39 -0.01 1.94 16 34 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 35 H 0.02 1.19 7.89 -2.39 -0.02 1.17 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.05 0.93 7.05 -2.38 -0.02 0.91 16 38 H 0.11 1.55 7.67 -2.38 -0.02 1.53 16 39 H 0.05 1.17 7.91 -2.39 -0.02 1.15 16 40 H 0.14 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 43 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.10 4.09 7.99 -2.91 -0.02 4.07 16 45 H 0.06 2.51 5.19 -2.39 -0.01 2.50 16 46 H 0.05 1.55 7.69 -2.39 -0.02 1.54 16 Total: -1.00 -78.60 362.44 1.97 -76.62 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.98 Total: 17.39 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 5.70 Total: 1.72 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -5.74 Total: -103.93 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -1.00 Total: -39.24 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -78.60 1.97 -76.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076849377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.692 kcal (2) G-P(sol) polarization free energy of solvation -78.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds