Wall clock time and date at job start Tue Mar 31 2020 13:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47430 * 2 1 4 4 C 1.46497 * 119.99865 * 270.00130 * 3 2 1 5 5 C 1.50707 * 109.47078 * 270.00054 * 4 3 2 6 6 H 1.07996 * 119.99818 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99618 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00641 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99538 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47546 * 59.99746 * 9 7 5 11 11 H 1.48501 * 109.47260 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47055 * 299.99480 * 9 7 5 13 13 C 1.34770 * 119.99886 * 90.00031 * 3 2 1 14 14 O 1.21594 * 119.99838 * 179.97438 * 13 3 2 15 15 N 1.34781 * 120.00408 * 0.02562 * 13 3 2 16 16 C 1.40166 * 119.99910 * 185.62797 * 15 13 3 17 17 C 1.38701 * 120.09232 * 24.76480 * 16 15 13 18 18 C 1.38202 * 119.98581 * 180.02562 * 17 16 15 19 19 C 1.38266 * 120.16292 * 0.02562 * 18 17 16 20 20 C 1.38251 * 120.17588 * 359.68041 * 19 18 17 21 21 C 1.38540 * 120.01135 * 0.59408 * 20 19 18 22 22 O 1.35990 * 120.08090 * 179.70227 * 21 20 19 23 23 C 1.42901 * 116.99696 * 359.72795 * 22 21 20 24 24 C 1.53003 * 109.46767 * 180.02562 * 23 22 21 25 25 C 1.52995 * 117.49650 * 185.00282 * 24 23 22 26 26 C 1.52997 * 117.50241 * 116.37777 * 24 23 22 27 27 H 1.08989 * 109.47727 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47117 * 300.00433 * 1 2 3 29 29 H 1.09008 * 109.47254 * 59.99707 * 1 2 3 30 30 H 1.09004 * 109.47020 * 240.00104 * 2 1 3 31 31 H 1.08998 * 109.47367 * 120.00143 * 2 1 3 32 32 H 1.08999 * 109.47260 * 29.99477 * 4 3 2 33 33 H 1.08993 * 109.47414 * 150.00095 * 4 3 2 34 34 H 0.96999 * 120.00545 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99324 * 5.62805 * 15 13 3 36 36 H 1.08004 * 120.00740 * 0.04586 * 17 16 15 37 37 H 1.08001 * 119.91835 * 179.97438 * 18 17 16 38 38 H 1.08006 * 119.91288 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.99563 * 180.29993 * 20 19 18 40 40 H 1.08994 * 109.47277 * 60.00255 * 23 22 21 41 41 H 1.08997 * 109.47036 * 299.99751 * 23 22 21 42 42 H 1.09000 * 115.56018 * 330.68203 * 24 23 22 43 43 H 1.09005 * 117.49961 * 145.01923 * 25 24 23 44 44 H 1.08995 * 117.50223 * 359.97438 * 25 24 23 45 45 H 1.09004 * 117.49240 * 359.97438 * 26 24 23 46 46 H 1.08996 * 117.51911 * 214.96811 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 3.3494 3.1265 -3.6177 9 14 5.9134 2.0961 -3.4172 10 1 6.1401 0.6394 -3.5955 11 1 6.1613 2.7972 -4.7025 12 1 6.8413 2.6184 -2.3821 13 6 2.2430 2.0165 1.1672 14 8 2.6488 3.1627 1.1671 15 7 2.0189 1.3810 2.3344 16 6 2.1386 2.0767 3.5453 17 6 1.9751 3.4537 3.5754 18 6 2.0941 4.1375 4.7705 19 6 2.3767 3.4524 5.9378 20 6 2.5350 2.0791 5.9166 21 6 2.4228 1.3870 4.7217 22 8 2.5843 0.0370 4.6982 23 6 2.8739 -0.6035 5.9424 24 6 3.0211 -2.1098 5.7184 25 6 3.2179 -2.9916 6.9531 26 6 4.3882 -2.7359 6.0013 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6755 3.5169 -4.4436 35 1 1.7747 0.4423 2.3364 36 1 1.7544 3.9915 2.6651 37 1 1.9670 5.2098 4.7926 38 1 2.4692 3.9908 6.8694 39 1 2.7508 1.5463 6.8309 40 1 2.0610 -0.4179 6.6444 41 1 3.8032 -0.2044 6.3487 42 1 2.4400 -2.5216 4.8933 43 1 2.7663 -3.9836 6.9403 44 1 3.2429 -2.4986 7.9249 45 1 5.1828 -2.0744 6.3466 46 1 4.7067 -3.5596 5.3626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078615303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:10 Heat of formation + Delta-G solvation = -5.271978 kcal Electronic energy + Delta-G solvation = -26766.978939 eV Core-core repulsion = 23044.404698 eV Total energy + Delta-G solvation = -3722.574241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.60013 -39.36928 -37.92862 -36.66383 -35.39524 -34.32434 -32.66710 -30.19122 -29.97774 -29.50622 -27.57498 -26.71592 -23.46643 -23.03578 -22.75806 -22.42638 -21.78844 -20.75387 -19.17667 -18.40580 -17.54947 -16.82774 -16.37324 -16.29863 -15.77632 -15.22216 -15.13770 -14.66803 -14.51848 -14.29603 -14.08799 -13.66586 -13.60414 -13.25222 -12.98161 -12.76033 -12.40083 -12.03711 -11.91560 -11.77829 -11.71681 -11.52466 -11.38438 -11.17482 -11.11819 -10.91890 -10.81439 -10.74099 -10.49665 -10.27539 -10.16184 -10.06066 -9.60399 -9.15466 -8.39905 -8.39526 -7.79113 -7.37872 -6.00921 -4.05324 1.52239 1.56545 2.92054 3.25801 3.34721 3.38873 3.43432 3.48789 3.72776 4.15290 4.38092 4.41047 4.50741 4.53713 4.63672 4.85588 4.93423 5.00471 5.15974 5.22903 5.27168 5.29805 5.32763 5.36609 5.53819 5.57707 5.61338 5.67712 5.73931 5.74972 5.83249 6.00022 6.06010 6.22087 6.27446 6.40468 6.49069 6.69268 6.84373 6.86724 7.08050 7.39132 7.51142 7.56021 7.72830 7.97506 8.26853 8.63400 8.95383 9.28265 9.60005 11.06870 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.003529 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.652117 B = 7931.852418 C = 8768.618876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.606 5.606 4 C 0.261 3.739 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.699 3.301 14 O -0.569 6.569 15 N -0.685 5.685 16 C 0.162 3.838 17 C -0.100 4.100 18 C -0.131 4.131 19 C -0.116 4.116 20 C -0.189 4.189 21 C 0.085 3.915 22 O -0.315 6.315 23 C 0.095 3.905 24 C -0.156 4.156 25 C -0.171 4.171 26 C -0.176 4.176 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.405 0.595 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -9.859 21.057 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.340 5.340 4 C 0.142 3.858 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.401 3.599 14 O -0.446 6.446 15 N -0.334 5.334 16 C 0.065 3.935 17 C -0.121 4.121 18 C -0.150 4.150 19 C -0.135 4.135 20 C -0.208 4.208 21 C 0.037 3.963 22 O -0.229 6.229 23 C 0.020 3.980 24 C -0.174 4.174 25 C -0.208 4.208 26 C -0.213 4.213 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.175 0.825 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.135 0.865 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.649 -9.081 20.549 22.942 hybrid contribution 1.003 -0.683 -0.124 1.219 sum -3.646 -9.764 20.425 22.930 Atomic orbital electron populations 1.22234 0.96643 1.01444 1.02514 1.21371 0.93612 0.84343 1.02441 1.47618 1.66838 1.13335 1.06223 1.19220 0.96165 0.93492 0.76928 1.21437 0.97036 1.31856 1.06221 0.92553 1.24911 0.97791 0.94933 0.96377 1.69917 1.35695 1.33475 1.14383 0.86569 0.84919 0.78207 0.77780 1.20299 1.21191 1.20209 1.15920 0.78989 0.84929 0.80081 1.90843 1.51470 1.16804 1.85494 1.42848 1.72969 1.14193 1.03373 1.16981 1.02124 0.91479 0.82964 1.21478 0.98834 0.91926 0.99852 1.20985 1.02043 0.99978 0.91990 1.20807 1.01114 0.93316 0.98274 1.20903 1.08387 0.95506 0.96039 1.18589 1.01714 0.82422 0.93539 1.85980 1.86466 1.17323 1.33165 1.22217 1.00282 0.90486 0.85016 1.22105 1.01568 0.92457 1.01271 1.22982 1.02775 1.00742 0.94297 1.23102 0.91618 1.03554 1.02978 0.92137 0.93060 0.91818 0.89555 0.92408 0.94780 0.93700 0.92689 0.75794 0.82506 0.85820 0.86225 0.85774 0.91773 0.92029 0.86524 0.88213 0.88603 0.88527 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.15 0.38 -1.97 16 2 C 0.11 1.76 5.94 -4.04 -0.02 1.74 16 3 N -0.61 -13.12 2.46 -180.80 -0.44 -13.57 16 4 C 0.26 6.87 5.16 -5.19 -0.03 6.84 16 5 C -0.53 -15.12 9.39 -34.44 -0.32 -15.45 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 13 C 0.70 15.41 8.08 -86.92 -0.70 14.70 16 14 O -0.57 -14.66 13.09 5.28 0.07 -14.59 16 15 N -0.69 -12.25 5.17 -14.11 -0.07 -12.33 16 16 C 0.16 2.77 6.45 -83.48 -0.54 2.24 16 17 C -0.10 -1.72 8.72 -39.42 -0.34 -2.07 16 18 C -0.13 -1.83 10.04 -39.58 -0.40 -2.23 16 19 C -0.12 -1.41 10.04 -39.57 -0.40 -1.80 16 20 C -0.19 -2.33 9.04 -39.47 -0.36 -2.69 16 21 C 0.08 1.24 6.70 -39.08 -0.26 0.98 16 22 O -0.32 -4.19 9.55 -19.71 -0.19 -4.37 16 23 C 0.10 0.92 5.02 37.16 0.19 1.10 16 24 C -0.16 -1.33 6.06 -90.62 -0.55 -1.87 16 25 C -0.17 -1.10 10.25 -26.73 -0.27 -1.38 16 26 C -0.18 -1.34 10.18 -26.73 -0.27 -1.61 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 31 H 0.06 0.83 6.29 -51.93 -0.33 0.50 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.41 6.28 6.04 -40.82 -0.25 6.04 16 36 H 0.16 3.08 5.79 -52.48 -0.30 2.77 16 37 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.12 1.18 6.30 -52.48 -0.33 0.85 16 40 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 41 H 0.06 0.56 7.41 -51.93 -0.38 0.18 16 42 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -33.40 381.46 -10.15 -43.54 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.98 Total: 6.18 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -4.00 Total: -1.78 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.22 Total: -51.90 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.12 Total: -18.97 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.40 -10.15 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078615303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.272 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds