Wall clock time and date at job start Tue Mar 31 2020 13:14:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46495 * 109.47401 * 2 1
4 4 C 1.46507 * 119.99914 * 90.00180 * 3 2 1
5 5 C 1.52998 * 109.46925 * 270.00407 * 4 3 2
6 6 H 1.09000 * 110.42297 * 57.69049 * 5 4 3
7 7 C 1.54481 * 110.36918 * 179.97438 * 5 4 3
8 8 C 1.54508 * 104.06349 * 142.80816 * 7 5 4
9 9 C 1.54484 * 104.06338 * 359.97438 * 8 7 5
10 10 O 1.44423 * 110.37200 * 295.37503 * 5 4 3
11 11 C 1.34776 * 120.00462 * 270.00269 * 3 2 1
12 12 O 1.21583 * 120.00376 * 179.97438 * 11 3 2
13 13 N 1.34778 * 119.99585 * 359.97438 * 11 3 2
14 14 C 1.39238 * 119.99738 * 175.34563 * 13 11 3
15 15 C 1.39482 * 119.83646 * 215.22416 * 14 13 11
16 16 C 1.36378 * 120.17261 * 179.76334 * 15 14 13
17 17 C 1.40874 * 119.82366 * 0.48831 * 16 15 14
18 18 C 1.41158 * 120.15882 * 179.78582 * 17 16 15
19 19 H 1.07997 * 120.00177 * 328.76405 * 18 17 16
20 20 C 1.39895 * 119.99588 * 148.77101 * 18 17 16
21 21 N 1.30881 * 119.99719 * 167.79054 * 20 18 17
22 22 Si 1.86799 * 119.99981 * 347.78571 * 20 18 17
23 23 H 1.48494 * 109.47113 * 92.61007 * 22 20 18
24 24 H 1.48504 * 109.46961 * 212.60823 * 22 20 18
25 25 H 1.48496 * 109.47453 * 332.60583 * 22 20 18
26 26 C 1.40860 * 119.67313 * 359.76496 * 17 16 15
27 27 C 1.36372 * 119.83188 * 0.02562 * 26 17 16
28 28 H 1.09003 * 109.47633 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.46854 * 299.99833 * 1 2 3
30 30 H 1.09000 * 109.47545 * 59.99694 * 1 2 3
31 31 H 1.09001 * 109.46854 * 240.00167 * 2 1 3
32 32 H 1.09002 * 109.47048 * 120.00466 * 2 1 3
33 33 H 1.08999 * 109.47003 * 149.99696 * 4 3 2
34 34 H 1.09004 * 109.46829 * 30.00007 * 4 3 2
35 35 H 1.08996 * 110.51354 * 24.16289 * 7 5 4
36 36 H 1.08996 * 110.62734 * 261.51135 * 7 5 4
37 37 H 1.08999 * 110.51145 * 118.64323 * 8 7 5
38 38 H 1.09005 * 110.51222 * 241.35643 * 8 7 5
39 39 H 1.09001 * 110.36872 * 94.85040 * 9 8 7
40 40 H 1.08999 * 110.36915 * 217.18984 * 9 8 7
41 41 H 0.97000 * 120.00078 * 355.34626 * 13 11 3
42 42 H 1.08003 * 119.91414 * 359.97438 * 15 14 13
43 43 H 1.07997 * 120.08583 * 180.27511 * 16 15 14
44 44 H 0.97000 * 120.00119 * 180.02562 * 21 20 18
45 45 H 1.08001 * 120.08792 * 180.02562 * 26 17 16
46 46 H 1.08001 * 119.91863 * 180.02562 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3811 0.0000
4 6 2.2626 2.0717 1.2688
5 6 0.9876 2.7929 1.7105
6 1 0.1641 2.0853 1.8062
7 6 1.2220 3.5286 3.0485
8 6 0.4121 4.8365 2.9048
9 6 -0.2154 4.7367 1.4967
10 8 0.6482 3.8353 0.7703
11 6 2.2430 2.0166 -1.1671
12 8 2.6479 3.1630 -1.1671
13 7 2.0188 1.3811 -2.3344
14 6 2.1574 2.0669 -3.5382
15 6 1.3076 1.7749 -4.6050
16 6 1.4342 2.4458 -5.7856
17 6 2.4332 3.4286 -5.9293
18 6 2.5734 4.1241 -7.1496
19 1 2.3275 3.6357 -8.0809
20 6 3.0311 5.4461 -7.1526
21 7 3.3889 6.0122 -8.2771
22 14 3.1314 6.4033 -5.5517
23 1 4.4898 6.2547 -4.9704
24 1 2.8604 7.8394 -5.8158
25 1 2.1238 5.8771 -4.5962
26 6 3.2910 3.7142 -4.8492
27 6 3.1495 3.0380 -3.6734
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 1.8932 -0.5138 -0.8900
32 1 1.8933 -0.5139 0.8900
33 1 3.0646 2.7983 1.1385
34 1 2.5507 1.3450 2.0284
35 1 2.2811 3.7481 3.1833
36 1 0.8465 2.9366 3.8831
37 1 -0.3654 4.8899 3.6669
38 1 1.0708 5.7026 2.9685
39 1 -1.2236 4.3271 1.5588
40 1 -0.2314 5.7159 1.0182
41 1 1.7608 0.4460 -2.3358
42 1 0.5452 1.0180 -4.4948
43 1 0.7726 2.2217 -6.6093
44 1 3.7066 6.9287 -8.2792
45 1 4.0589 4.4667 -4.9519
46 1 3.8062 3.2561 -2.8441
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000101741215.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:14:13
Heat of formation + Delta-G solvation = -41.895448 kcal
Electronic energy + Delta-G solvation = -27367.511242 eV
Core-core repulsion = 23643.348888 eV
Total energy + Delta-G solvation = -3724.162354 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-40.34242 -39.22358 -37.70168 -35.79412 -34.44699 -32.99811 -32.20675 -31.39545
-29.98616 -29.80220 -29.03340 -25.86695 -24.43629 -23.35142 -22.17682 -21.69442
-21.12142 -20.74334 -19.19592 -18.26879 -17.30334 -16.78319 -16.42626 -16.05602
-15.44498 -15.42230 -14.84389 -14.68426 -13.96016 -13.95493 -13.78429 -13.68782
-13.55626 -13.05679 -12.70078 -12.50595 -12.43320 -12.26350 -12.16167 -11.95452
-11.81405 -11.75459 -11.61488 -11.30651 -11.08292 -10.79860 -10.75126 -10.68024
-10.44713 -10.04461 -9.71602 -9.66068 -9.40292 -8.99798 -8.85396 -8.56326
-7.66409 -7.01896 -6.80759 -4.32469 2.59180 2.80975 2.88444 3.25980
3.35315 3.49900 3.70730 3.88470 4.13742 4.28129 4.43780 4.56085
4.65374 4.69051 4.76600 4.93794 4.97157 5.11481 5.14686 5.23417
5.37622 5.42107 5.52584 5.53387 5.54195 5.62442 5.66354 5.73357
5.86084 5.93266 6.00565 6.06365 6.26837 6.47487 6.56359 6.82040
6.88255 6.92564 7.02913 7.07646 7.29757 7.54524 7.70581 7.79208
7.99336 8.20735 8.43812 8.46278 8.74366 8.91922 9.15326 10.21530
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.015717 B = 0.003834 C = 0.003309
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1781.049785 B = 7302.141966 C = 8459.015670
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.107 3.893
3 N -0.632 5.632
4 C 0.142 3.858
5 C 0.054 3.946
6 H 0.066 0.934
7 C -0.149 4.149
8 C -0.153 4.153
9 C 0.041 3.959
10 O -0.340 6.340
11 C 0.702 3.298
12 O -0.559 6.559
13 N -0.671 5.671
14 C 0.020 3.980
15 C -0.099 4.099
16 C -0.195 4.195
17 C 0.086 3.914
18 C -0.445 4.445
19 H 0.090 0.910
20 C 0.083 3.917
21 N -0.819 5.819
22 Si 0.912 3.088
23 H -0.271 1.271
24 H -0.295 1.295
25 H -0.241 1.241
26 C -0.226 4.226
27 C -0.064 4.064
28 H 0.063 0.937
29 H 0.057 0.943
30 H 0.061 0.939
31 H 0.073 0.927
32 H 0.077 0.923
33 H 0.091 0.909
34 H 0.085 0.915
35 H 0.077 0.923
36 H 0.074 0.926
37 H 0.072 0.928
38 H 0.074 0.926
39 H 0.053 0.947
40 H 0.089 0.911
41 H 0.390 0.610
42 H 0.094 0.906
43 H 0.103 0.897
44 H 0.284 0.716
45 H 0.101 0.899
46 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.663 -9.629 22.713 25.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.016 4.016
3 N -0.370 5.370
4 C 0.018 3.982
5 C -0.005 4.005
6 H 0.083 0.917
7 C -0.187 4.187
8 C -0.191 4.191
9 C -0.037 4.037
10 O -0.258 6.258
11 C 0.404 3.596
12 O -0.433 6.433
13 N -0.318 5.318
14 C -0.073 4.073
15 C -0.120 4.120
16 C -0.215 4.215
17 C 0.082 3.918
18 C -0.475 4.475
19 H 0.108 0.892
20 C -0.135 4.135
21 N -0.444 5.444
22 Si 0.739 3.261
23 H -0.198 1.198
24 H -0.223 1.223
25 H -0.164 1.164
26 C -0.246 4.246
27 C -0.084 4.084
28 H 0.082 0.918
29 H 0.076 0.924
30 H 0.080 0.920
31 H 0.091 0.909
32 H 0.095 0.905
33 H 0.110 0.890
34 H 0.103 0.897
35 H 0.096 0.904
36 H 0.093 0.907
37 H 0.091 0.909
38 H 0.093 0.907
39 H 0.071 0.929
40 H 0.108 0.892
41 H 0.225 0.775
42 H 0.112 0.888
43 H 0.121 0.879
44 H 0.094 0.906
45 H 0.119 0.881
46 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -5.201 -8.559 22.293 24.440
hybrid contribution -0.312 0.032 0.883 0.937
sum -5.513 -8.527 23.176 25.303
Atomic orbital electron populations
1.22312 0.96107 1.01881 1.02990 1.21465 0.94475 0.83034 1.02666
1.47077 1.71259 1.13761 1.04924 1.21351 0.96471 0.96115 0.84254
1.23567 0.97668 0.91099 0.88205 0.91654 1.22940 1.01628 0.96503
0.97651 1.22921 0.99847 0.98422 0.97914 1.23383 0.93689 0.95226
0.91369 1.89457 1.66564 1.36095 1.33703 1.15851 0.79292 0.84380
0.80109 1.90921 1.50959 1.16131 1.85320 1.42214 1.72855 1.13055
1.03720 1.16936 1.01865 1.03406 0.85094 1.20157 0.97364 1.00462
0.93970 1.20580 1.01087 1.02955 0.96883 1.17787 0.89644 0.91859
0.92467 1.19432 1.37111 0.96993 0.93920 0.89232 1.26125 0.90863
0.98383 0.98085 1.69681 1.31609 1.14627 1.28479 0.86331 0.80786
0.76754 0.82216 1.19790 1.22283 1.16403 1.20730 1.03115 1.05413
0.95350 1.20489 0.95768 0.95551 0.96564 0.91760 0.92367 0.91965
0.90881 0.90466 0.89022 0.89720 0.90448 0.90746 0.90896 0.90678
0.92916 0.89250 0.77517 0.88774 0.87875 0.90621 0.88118 0.86924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.50 10.24 37.16 0.38 -1.12 16
2 C 0.11 0.96 5.98 -4.05 -0.02 0.94 16
3 N -0.63 -8.29 2.46 -179.42 -0.44 -8.73 16
4 C 0.14 1.62 5.11 -4.04 -0.02 1.60 16
5 C 0.05 0.61 3.54 -25.95 -0.09 0.52 16
6 H 0.07 0.67 6.23 -51.93 -0.32 0.34 16
7 C -0.15 -1.27 6.63 -25.16 -0.17 -1.44 16
8 C -0.15 -1.37 7.09 -25.16 -0.18 -1.55 16
9 C 0.04 0.48 7.63 37.94 0.29 0.77 16
10 O -0.34 -5.36 10.22 -41.07 -0.42 -5.78 16
11 C 0.70 12.84 7.76 -86.92 -0.67 12.17 16
12 O -0.56 -12.74 12.61 -0.55 -0.01 -12.75 16
13 N -0.67 -11.96 5.18 -14.10 -0.07 -12.03 16
14 C 0.02 0.44 6.30 -83.57 -0.53 -0.09 16
15 C -0.10 -2.12 9.90 -39.79 -0.39 -2.51 16
16 C -0.20 -4.64 9.74 -39.26 -0.38 -5.02 16
17 C 0.09 2.27 5.13 -106.80 -0.55 1.72 16
18 C -0.45 -12.54 9.59 -37.85 -0.36 -12.90 16
19 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16
20 C 0.08 2.29 5.47 -17.34 -0.09 2.20 16
21 N -0.82 -22.85 13.93 55.55 0.77 -22.08 16
22 Si 0.91 22.82 24.39 -169.99 -4.15 18.67 16
23 H -0.27 -6.67 6.67 56.52 0.38 -6.30 16
24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
25 H -0.24 -6.37 6.66 56.52 0.38 -6.00 16
26 C -0.23 -5.93 6.93 -39.26 -0.27 -6.20 16
27 C -0.06 -1.57 8.61 -39.79 -0.34 -1.91 16
28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
29 H 0.06 0.50 6.23 -51.93 -0.32 0.18 16
30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
31 H 0.07 0.62 6.30 -51.93 -0.33 0.29 16
32 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16
33 H 0.09 1.26 7.42 -51.93 -0.39 0.88 16
34 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16
35 H 0.08 0.64 7.87 -51.93 -0.41 0.24 16
36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16
39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16
41 H 0.39 5.49 6.51 -40.82 -0.27 5.22 16
42 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16
43 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16
44 H 0.28 7.22 8.30 -40.82 -0.34 6.88 16
45 H 0.10 2.66 4.40 -52.49 -0.23 2.43 16
46 H 0.11 2.80 6.22 -52.49 -0.33 2.47 16
LS Contribution 361.32 15.07 5.45 5.45
Total: -1.00 -33.97 361.32 -9.10 -43.07
By element:
Atomic # 1 Polarization: 13.84 SS G_CDS: -6.82 Total: 7.01 kcal
Atomic # 6 Polarization: -9.42 SS G_CDS: -3.41 Total: -12.83 kcal
Atomic # 7 Polarization: -43.10 SS G_CDS: 0.26 Total: -42.84 kcal
Atomic # 8 Polarization: -18.10 SS G_CDS: -0.43 Total: -18.53 kcal
Atomic # 14 Polarization: 22.82 SS G_CDS: -4.15 Total: 18.67 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -33.97 -9.10 -43.07 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000101741215.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.178 kcal
(2) G-P(sol) polarization free energy of solvation -33.971 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.793 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.895 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds