Wall clock time and date at job start Tue Mar 31 2020 13:14:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46495 * 109.47401 * 2 1
4 4 C 1.46507 * 119.99914 * 90.00180 * 3 2 1
5 5 C 1.52998 * 109.46925 * 270.00407 * 4 3 2
6 6 H 1.09000 * 110.42297 * 57.69049 * 5 4 3
7 7 C 1.54481 * 110.36918 * 179.97438 * 5 4 3
8 8 C 1.54508 * 104.06349 * 142.80816 * 7 5 4
9 9 C 1.54484 * 104.06338 * 359.97438 * 8 7 5
10 10 O 1.44423 * 110.37200 * 295.37503 * 5 4 3
11 11 C 1.34776 * 120.00462 * 270.00269 * 3 2 1
12 12 O 1.21583 * 120.00376 * 179.97438 * 11 3 2
13 13 N 1.34778 * 119.99585 * 359.97438 * 11 3 2
14 14 C 1.39238 * 119.99738 * 175.34563 * 13 11 3
15 15 C 1.39482 * 119.83646 * 215.22416 * 14 13 11
16 16 C 1.36378 * 120.17261 * 179.76334 * 15 14 13
17 17 C 1.40874 * 119.82366 * 0.48831 * 16 15 14
18 18 C 1.41158 * 120.15882 * 179.78582 * 17 16 15
19 19 H 1.07997 * 120.00177 * 328.76405 * 18 17 16
20 20 C 1.39895 * 119.99588 * 148.77101 * 18 17 16
21 21 N 1.30881 * 119.99719 * 167.79054 * 20 18 17
22 22 Si 1.86799 * 119.99981 * 347.78571 * 20 18 17
23 23 H 1.48494 * 109.47113 * 92.61007 * 22 20 18
24 24 H 1.48504 * 109.46961 * 212.60823 * 22 20 18
25 25 H 1.48496 * 109.47453 * 332.60583 * 22 20 18
26 26 C 1.40860 * 119.67313 * 359.76496 * 17 16 15
27 27 C 1.36372 * 119.83188 * 0.02562 * 26 17 16
28 28 H 1.09003 * 109.47633 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.46854 * 299.99833 * 1 2 3
30 30 H 1.09000 * 109.47545 * 59.99694 * 1 2 3
31 31 H 1.09001 * 109.46854 * 240.00167 * 2 1 3
32 32 H 1.09002 * 109.47048 * 120.00466 * 2 1 3
33 33 H 1.08999 * 109.47003 * 149.99696 * 4 3 2
34 34 H 1.09004 * 109.46829 * 30.00007 * 4 3 2
35 35 H 1.08996 * 110.51354 * 24.16289 * 7 5 4
36 36 H 1.08996 * 110.62734 * 261.51135 * 7 5 4
37 37 H 1.08999 * 110.51145 * 118.64323 * 8 7 5
38 38 H 1.09005 * 110.51222 * 241.35643 * 8 7 5
39 39 H 1.09001 * 110.36872 * 94.85040 * 9 8 7
40 40 H 1.08999 * 110.36915 * 217.18984 * 9 8 7
41 41 H 0.97000 * 120.00078 * 355.34626 * 13 11 3
42 42 H 1.08003 * 119.91414 * 359.97438 * 15 14 13
43 43 H 1.07997 * 120.08583 * 180.27511 * 16 15 14
44 44 H 0.97000 * 120.00119 * 180.02562 * 21 20 18
45 45 H 1.08001 * 120.08792 * 180.02562 * 26 17 16
46 46 H 1.08001 * 119.91863 * 180.02562 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3811 0.0000
4 6 2.2626 2.0717 1.2688
5 6 0.9876 2.7929 1.7105
6 1 0.1641 2.0853 1.8062
7 6 1.2220 3.5286 3.0485
8 6 0.4121 4.8365 2.9048
9 6 -0.2154 4.7367 1.4967
10 8 0.6482 3.8353 0.7703
11 6 2.2430 2.0166 -1.1671
12 8 2.6479 3.1630 -1.1671
13 7 2.0188 1.3811 -2.3344
14 6 2.1574 2.0669 -3.5382
15 6 1.3076 1.7749 -4.6050
16 6 1.4342 2.4458 -5.7856
17 6 2.4332 3.4286 -5.9293
18 6 2.5734 4.1241 -7.1496
19 1 2.3275 3.6357 -8.0809
20 6 3.0311 5.4461 -7.1526
21 7 3.3889 6.0122 -8.2771
22 14 3.1314 6.4033 -5.5517
23 1 4.4898 6.2547 -4.9704
24 1 2.8604 7.8394 -5.8158
25 1 2.1238 5.8771 -4.5962
26 6 3.2910 3.7142 -4.8492
27 6 3.1495 3.0380 -3.6734
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 1.8932 -0.5138 -0.8900
32 1 1.8933 -0.5139 0.8900
33 1 3.0646 2.7983 1.1385
34 1 2.5507 1.3450 2.0284
35 1 2.2811 3.7481 3.1833
36 1 0.8465 2.9366 3.8831
37 1 -0.3654 4.8899 3.6669
38 1 1.0708 5.7026 2.9685
39 1 -1.2236 4.3271 1.5588
40 1 -0.2314 5.7159 1.0182
41 1 1.7608 0.4460 -2.3358
42 1 0.5452 1.0180 -4.4948
43 1 0.7726 2.2217 -6.6093
44 1 3.7066 6.9287 -8.2792
45 1 4.0589 4.4667 -4.9519
46 1 3.8062 3.2561 -2.8441
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000101741215.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:14:12
Heat of formation + Delta-G solvation = -64.040861 kcal
Electronic energy + Delta-G solvation = -27368.471540 eV
Core-core repulsion = 23643.348888 eV
Total energy + Delta-G solvation = -3725.122651 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.65921 -40.29655 -39.39160 -37.01322 -36.17913 -34.87650 -33.07413 -32.28115
-31.71232 -31.44974 -30.32325 -27.16414 -25.90209 -24.32050 -23.59442 -23.17778
-22.42135 -21.86234 -20.61932 -19.66014 -19.23995 -18.23462 -17.45024 -17.11661
-17.04973 -16.37849 -16.17770 -16.01491 -15.60934 -15.50112 -15.12930 -14.73678
-14.55315 -14.50617 -14.35532 -14.10516 -13.94599 -13.68844 -13.45523 -13.04737
-12.74167 -12.72157 -12.68631 -12.53781 -12.34875 -12.32932 -12.12963 -12.02969
-11.80713 -11.69611 -11.48233 -11.09130 -10.95932 -10.65738 -10.60448 -9.66250
-9.58419 -8.89910 -8.84876 -6.42010 0.68772 0.86816 1.22675 1.33193
1.44835 1.70173 2.09462 2.25248 2.67088 2.95672 3.15778 3.51566
3.68204 3.80685 3.99196 4.05750 4.14085 4.21424 4.23895 4.35574
4.37965 4.41300 4.56131 4.61698 4.64254 4.66970 4.81346 4.83200
4.91752 4.93197 4.97191 4.98195 5.00145 5.11575 5.14787 5.20360
5.34478 5.38877 5.50103 5.62829 5.75324 5.90463 5.95247 6.04386
6.10584 6.25059 6.41046 6.72829 6.85968 7.08218 7.73591 8.19856
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.015717 B = 0.003834 C = 0.003309
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1781.049785 B = 7302.141966 C = 8459.015670
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.099 3.901
3 N -0.621 5.621
4 C 0.136 3.864
5 C 0.049 3.951
6 H 0.080 0.920
7 C -0.142 4.142
8 C -0.148 4.148
9 C 0.031 3.969
10 O -0.392 6.392
11 C 0.695 3.305
12 O -0.610 6.610
13 N -0.663 5.663
14 C 0.047 3.953
15 C -0.093 4.093
16 C -0.194 4.194
17 C 0.062 3.938
18 C -0.476 4.476
19 H 0.067 0.933
20 C 0.054 3.946
21 N -0.854 5.854
22 Si 0.959 3.041
23 H -0.270 1.270
24 H -0.276 1.276
25 H -0.267 1.267
26 C -0.237 4.237
27 C -0.084 4.084
28 H 0.091 0.909
29 H 0.059 0.941
30 H 0.033 0.967
31 H 0.080 0.920
32 H 0.116 0.884
33 H 0.060 0.940
34 H 0.133 0.867
35 H 0.076 0.924
36 H 0.106 0.894
37 H 0.098 0.902
38 H 0.068 0.932
39 H 0.064 0.936
40 H 0.074 0.926
41 H 0.412 0.588
42 H 0.142 0.858
43 H 0.118 0.882
44 H 0.292 0.708
45 H 0.089 0.911
46 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.089 -12.511 26.456 30.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.023 4.023
3 N -0.358 5.358
4 C 0.013 3.987
5 C -0.009 4.009
6 H 0.098 0.902
7 C -0.180 4.180
8 C -0.186 4.186
9 C -0.045 4.045
10 O -0.311 6.311
11 C 0.397 3.603
12 O -0.489 6.489
13 N -0.313 5.313
14 C -0.048 4.048
15 C -0.113 4.113
16 C -0.214 4.214
17 C 0.059 3.941
18 C -0.506 4.506
19 H 0.085 0.915
20 C -0.159 4.159
21 N -0.482 5.482
22 Si 0.785 3.215
23 H -0.197 1.197
24 H -0.203 1.203
25 H -0.191 1.191
26 C -0.257 4.257
27 C -0.105 4.105
28 H 0.110 0.890
29 H 0.078 0.922
30 H 0.053 0.947
31 H 0.098 0.902
32 H 0.134 0.866
33 H 0.078 0.922
34 H 0.151 0.849
35 H 0.095 0.905
36 H 0.125 0.875
37 H 0.117 0.883
38 H 0.087 0.913
39 H 0.083 0.917
40 H 0.092 0.908
41 H 0.251 0.749
42 H 0.160 0.840
43 H 0.136 0.864
44 H 0.102 0.898
45 H 0.107 0.893
46 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -6.646 -11.503 26.089 29.276
hybrid contribution 0.043 0.685 -0.033 0.687
sum -6.603 -10.818 26.056 28.975
Atomic orbital electron populations
1.22263 0.95552 1.03255 1.01677 1.21849 0.94839 0.80596 1.04974
1.47140 1.69801 1.15170 1.03660 1.21634 0.95889 0.96763 0.84385
1.23766 0.97760 0.90718 0.88686 0.90214 1.22943 1.01714 0.96178
0.97158 1.22909 1.00383 0.98626 0.96669 1.23529 0.94145 0.94200
0.92671 1.89411 1.67486 1.37849 1.36404 1.16136 0.78838 0.83987
0.81334 1.90898 1.53078 1.18641 1.86258 1.42051 1.72827 1.13984
1.02478 1.17113 0.99664 1.01351 0.86633 1.20520 0.97681 1.00699
0.92418 1.20870 1.00246 1.01900 0.98360 1.17922 0.90930 0.93154
0.92085 1.19426 1.39618 0.97817 0.93782 0.91485 1.26540 0.90860
0.98745 0.99794 1.69689 1.33621 1.15515 1.29344 0.85613 0.79851
0.76739 0.79251 1.19658 1.20305 1.19134 1.20747 1.03156 1.05720
0.96050 1.20569 0.97104 0.96927 0.95860 0.89004 0.92243 0.94733
0.90195 0.86599 0.92163 0.84950 0.90547 0.87537 0.88341 0.91324
0.91736 0.90798 0.74921 0.84025 0.86352 0.89776 0.89283 0.87629
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.20 10.24 71.98 0.74 -1.46 16
2 C 0.10 1.33 5.98 86.38 0.52 1.84 16
3 N -0.62 -14.60 2.46 -839.83 -2.07 -16.67 16
4 C 0.14 2.75 5.11 86.38 0.44 3.19 16
5 C 0.05 0.99 3.54 31.10 0.11 1.10 16
6 H 0.08 1.34 6.23 -2.39 -0.01 1.33 16
7 C -0.14 -1.98 6.63 31.61 0.21 -1.77 16
8 C -0.15 -2.36 7.09 31.61 0.22 -2.13 16
9 C 0.03 0.72 7.63 72.49 0.55 1.28 16
10 O -0.39 -12.24 10.22 -143.39 -1.46 -13.71 16
11 C 0.69 24.56 7.76 179.05 1.39 25.95 16
12 O -0.61 -28.19 12.61 1.61 0.02 -28.17 16
13 N -0.66 -22.15 5.18 -316.78 -1.64 -23.80 16
14 C 0.05 2.00 6.30 38.57 0.24 2.24 16
15 C -0.09 -3.74 9.90 22.14 0.22 -3.52 16
16 C -0.19 -9.08 9.74 22.48 0.22 -8.86 16
17 C 0.06 3.36 5.13 -21.28 -0.11 3.25 16
18 C -0.48 -27.97 9.59 23.39 0.22 -27.74 16
19 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16
20 C 0.05 3.12 5.47 85.24 0.47 3.58 16
21 N -0.85 -49.42 13.93 21.82 0.30 -49.12 16
22 Si 0.96 48.97 24.39 68.60 1.67 50.64 16
23 H -0.27 -13.53 6.67 99.48 0.66 -12.87 16
24 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16
25 H -0.27 -14.58 6.66 99.48 0.66 -13.92 16
26 C -0.24 -12.76 6.93 22.48 0.16 -12.60 16
27 C -0.08 -4.20 8.61 22.13 0.19 -4.01 16
28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16
29 H 0.06 0.77 6.23 -2.39 -0.01 0.76 16
30 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16
31 H 0.08 0.98 6.30 -2.39 -0.02 0.97 16
32 H 0.12 0.76 7.89 -2.39 -0.02 0.74 16
33 H 0.06 1.62 7.42 -2.39 -0.02 1.61 16
34 H 0.13 1.36 7.89 -2.38 -0.02 1.34 16
35 H 0.08 1.09 7.87 -2.39 -0.02 1.07 16
36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16
37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16
38 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16
39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
41 H 0.41 10.09 6.51 -92.71 -0.60 9.49 16
42 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16
43 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16
44 H 0.29 15.32 8.30 -92.71 -0.77 14.55 16
45 H 0.09 4.91 4.40 -2.91 -0.01 4.90 16
46 H 0.11 5.40 6.22 -2.91 -0.02 5.38 16
Total: -1.00 -79.48 361.32 2.92 -76.56
By element:
Atomic # 1 Polarization: 23.63 SS G_CDS: 0.30 Total: 23.93 kcal
Atomic # 6 Polarization: -25.46 SS G_CDS: 5.79 Total: -19.67 kcal
Atomic # 7 Polarization: -86.18 SS G_CDS: -3.40 Total: -89.58 kcal
Atomic # 8 Polarization: -40.43 SS G_CDS: -1.44 Total: -41.88 kcal
Atomic # 14 Polarization: 48.97 SS G_CDS: 1.67 Total: 50.64 kcal
Total: -79.48 2.92 -76.56 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000101741215.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.520 kcal
(2) G-P(sol) polarization free energy of solvation -79.479 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.960 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.041 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds