Wall clock time and date at job start Tue Mar 31 2020 13:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47475 * 2 1 4 4 C 1.46504 * 119.99829 * 274.81022 * 3 2 1 5 5 C 1.50700 * 109.46714 * 263.69607 * 4 3 2 6 6 H 1.08003 * 120.00668 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00202 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00685 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99765 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47386 * 89.99452 * 9 7 5 11 11 H 1.48497 * 109.47385 * 209.99700 * 9 7 5 12 12 H 1.48502 * 109.47085 * 329.99761 * 9 7 5 13 13 C 1.34775 * 120.00245 * 94.79982 * 3 2 1 14 14 O 1.21360 * 119.99828 * 355.40921 * 13 3 2 15 15 C 1.49356 * 119.99818 * 175.40070 * 13 3 2 16 16 O 1.21369 * 120.00238 * 0.16941 * 15 13 3 17 17 N 1.34785 * 119.99643 * 180.16881 * 15 13 3 18 18 C 1.39721 * 119.99695 * 174.68650 * 17 15 13 19 19 C 1.38928 * 120.07888 * 128.12386 * 18 17 15 20 20 C 1.50703 * 120.03386 * 359.97247 * 19 18 17 21 21 C 1.38093 * 119.92560 * 179.67488 * 19 18 17 22 22 C 1.38294 * 120.07228 * 0.61940 * 21 19 18 23 23 C 1.50707 * 119.92045 * 179.70116 * 22 21 19 24 24 C 1.38291 * 120.15502 * 359.67390 * 22 21 19 25 25 C 1.38096 * 120.07363 * 0.02562 * 24 22 21 26 26 C 1.50700 * 120.03639 * 180.02562 * 25 24 22 27 27 H 1.09001 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46913 * 300.00364 * 1 2 3 29 29 H 1.08998 * 109.46733 * 60.00548 * 1 2 3 30 30 H 1.09003 * 109.47567 * 239.99582 * 2 1 3 31 31 H 1.09006 * 109.47121 * 119.99988 * 2 1 3 32 32 H 1.08996 * 109.47551 * 23.69468 * 4 3 2 33 33 H 1.08998 * 109.47514 * 143.70196 * 4 3 2 34 34 H 0.96988 * 120.00447 * 180.02562 * 8 7 5 35 35 H 0.96994 * 119.99900 * 354.95381 * 17 15 13 36 36 H 1.09000 * 109.47214 * 94.82741 * 20 19 18 37 37 H 1.09006 * 109.46653 * 214.82033 * 20 19 18 38 38 H 1.08998 * 109.47165 * 334.82333 * 20 19 18 39 39 H 1.08001 * 119.96645 * 180.33802 * 21 19 18 40 40 H 1.08996 * 109.47402 * 269.97149 * 23 22 21 41 41 H 1.08995 * 109.47402 * 29.97708 * 23 22 21 42 42 H 1.09001 * 109.46766 * 149.97729 * 23 22 21 43 43 H 1.08003 * 119.96170 * 180.02562 * 24 22 21 44 44 H 1.09002 * 109.47230 * 277.81464 * 26 25 24 45 45 H 1.09000 * 109.47440 * 37.80613 * 26 25 24 46 46 H 1.09002 * 109.47303 * 157.81048 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1623 2.1072 -1.2643 5 6 3.5896 2.0121 -1.7384 6 1 4.3168 1.4652 -1.1565 7 6 3.9671 2.6224 -2.9157 8 7 5.2128 2.5399 -3.3293 9 14 2.7094 3.5678 -3.9227 10 1 2.6888 4.9862 -3.4837 11 1 3.0743 3.4998 -5.3606 12 1 1.3652 2.9687 -3.7244 13 6 2.3352 1.9839 1.1631 14 8 2.1376 1.4133 2.2157 15 6 2.9295 3.3541 1.1563 16 8 3.1244 3.9260 0.1037 17 7 3.2494 3.9556 2.3194 18 6 3.9064 5.1887 2.3105 19 6 3.4011 6.2522 3.0479 20 6 2.1426 6.0776 3.8584 21 6 4.0567 7.4675 3.0422 22 6 5.2080 7.6304 2.2934 23 6 5.9170 8.9603 2.2844 24 6 5.7104 6.5757 1.5535 25 6 5.0632 5.3558 1.5595 26 6 5.6118 4.2069 0.7533 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.5012 1.6693 -2.0121 33 1 1.8984 3.1540 -1.1143 34 1 5.4784 2.9696 -4.1573 35 1 3.0270 3.5306 3.1624 36 1 2.4043 5.8249 4.8859 37 1 1.5714 7.0060 3.8468 38 1 1.5420 5.2760 3.4287 39 1 3.6675 8.2931 3.6195 40 1 5.5227 9.5768 1.4767 41 1 5.7566 9.4641 3.2375 42 1 6.9846 8.8017 2.1324 43 1 6.6099 6.7063 0.9701 44 1 5.2894 4.3038 -0.2834 45 1 6.7008 4.2191 0.7975 46 1 5.2421 3.2666 1.1624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124001420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:16 Heat of formation + Delta-G solvation = -35.230963 kcal Electronic energy + Delta-G solvation = -28002.539822 eV Core-core repulsion = 24278.666461 eV Total energy + Delta-G solvation = -3723.873360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.76121 -39.37596 -37.72184 -35.87330 -34.63845 -33.29473 -32.58316 -31.85461 -30.68446 -27.77573 -27.72676 -26.57357 -26.46836 -24.35882 -22.71733 -21.86105 -20.76154 -20.05965 -19.24098 -17.44997 -17.03495 -16.81848 -16.05809 -15.93958 -14.96931 -14.88149 -14.35685 -14.09015 -13.94391 -13.91485 -13.48469 -13.39000 -13.19630 -13.14078 -12.77989 -12.68352 -12.52333 -12.48966 -12.24858 -12.10162 -11.92858 -11.75904 -11.46174 -11.06061 -11.02514 -10.93896 -10.79609 -10.72661 -10.66613 -10.38234 -10.18493 -9.59152 -9.51649 -8.72861 -8.47606 -8.32675 -7.96852 -7.82666 -6.06158 -4.02771 1.39173 1.58125 2.13340 2.91664 3.31772 3.36287 3.40583 3.77583 3.94625 4.08282 4.43173 4.84982 4.91339 4.96764 5.03938 5.28087 5.33961 5.37370 5.44314 5.55735 5.59470 5.60992 5.63299 5.69128 5.70579 5.81106 5.87504 6.00995 6.03804 6.08443 6.18838 6.27727 6.36258 6.45278 6.46756 6.54047 6.66224 6.72798 6.84986 6.93094 7.01517 7.12389 7.30316 7.54768 7.59012 7.90495 8.29981 8.49730 8.66101 8.94010 9.54782 11.06761 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011728 B = 0.005403 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.915294 B = 5181.447635 C = 6752.279545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.555 5.555 4 C 0.198 3.802 5 C -0.511 4.511 6 H 0.072 0.928 7 C 0.082 3.918 8 N -0.897 5.897 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.510 3.490 14 O -0.557 6.557 15 C 0.491 3.509 16 O -0.438 6.438 17 N -0.662 5.662 18 C 0.137 3.863 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.091 4.091 23 C -0.110 4.110 24 C -0.115 4.115 25 C -0.057 4.057 26 C -0.110 4.110 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.263 0.737 35 H 0.412 0.588 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.056 0.944 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 6.829 12.079 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.285 5.285 4 C 0.077 3.923 5 C -0.549 4.549 6 H 0.090 0.910 7 C -0.121 4.121 8 N -0.535 5.535 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.193 1.193 13 C 0.292 3.708 14 O -0.438 6.438 15 C 0.273 3.727 16 O -0.306 6.306 17 N -0.313 5.313 18 C 0.044 3.956 19 C -0.095 4.095 20 C -0.169 4.169 21 C -0.140 4.140 22 C -0.091 4.091 23 C -0.167 4.167 24 C -0.134 4.134 25 C -0.059 4.059 26 C -0.166 4.166 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.250 0.750 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.122 0.878 45 H 0.075 0.925 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.765 6.925 11.595 14.020 hybrid contribution -0.560 0.316 -0.381 0.747 sum -4.325 7.241 11.214 14.031 Atomic orbital electron populations 1.22115 0.96255 1.01735 1.02144 1.21461 0.93830 0.82585 1.03406 1.47948 1.59487 1.13509 1.07585 1.20326 0.98844 0.93229 0.79871 1.21052 0.92935 1.33804 1.07147 0.90955 1.24685 0.94913 0.95361 0.97095 1.69879 1.16384 1.44498 1.22777 0.86935 0.82225 0.81557 0.79420 1.19862 1.21429 1.19321 1.19827 0.79851 0.86746 0.84379 1.90653 1.55721 1.66541 1.30923 1.20243 0.80882 0.87565 0.84042 1.90924 1.46668 1.63932 1.29059 1.43080 1.59174 1.19561 1.09520 1.17237 0.92571 0.85383 1.00433 1.19769 0.97065 0.92404 1.00276 1.20718 0.94520 1.02778 0.98914 1.20589 0.95940 0.96363 1.01092 1.19825 0.96035 0.95779 0.97498 1.20740 0.99946 0.93898 1.02066 1.20760 1.00720 0.91876 1.00015 1.20061 0.92642 0.96403 0.96750 1.20929 0.99452 0.94629 1.01622 0.91851 0.92638 0.92445 0.89748 0.90253 0.95323 0.92500 0.92724 0.75018 0.91263 0.91454 0.91505 0.86180 0.91384 0.91876 0.91690 0.85882 0.87805 0.92476 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.11 1.88 6.12 -4.04 -0.02 1.86 16 3 N -0.56 -11.43 2.47 -175.60 -0.43 -11.86 16 4 C 0.20 4.57 3.85 -5.19 -0.02 4.55 16 5 C -0.51 -13.73 8.41 -34.44 -0.29 -14.02 16 6 H 0.07 2.15 8.06 -52.48 -0.42 1.73 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 9 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.51 10.41 7.67 -11.63 -0.09 10.32 16 14 O -0.56 -11.34 16.03 5.49 0.09 -11.25 16 15 C 0.49 9.87 5.80 -11.63 -0.07 9.80 16 16 O -0.44 -10.08 9.25 5.48 0.05 -10.03 16 17 N -0.66 -11.14 3.87 -10.30 -0.04 -11.18 16 18 C 0.14 2.28 5.84 -83.75 -0.49 1.79 16 19 C -0.09 -1.31 5.90 -104.42 -0.62 -1.92 16 20 C -0.11 -1.26 9.73 36.01 0.35 -0.91 16 21 C -0.12 -1.56 9.37 -39.61 -0.37 -1.93 16 22 C -0.09 -1.20 5.88 -104.58 -0.62 -1.82 16 23 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 24 C -0.12 -1.76 9.38 -39.61 -0.37 -2.13 16 25 C -0.06 -0.99 5.48 -104.42 -0.57 -1.56 16 26 C -0.11 -2.16 8.22 36.01 0.30 -1.86 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 31 H 0.08 1.34 7.35 -51.93 -0.38 0.95 16 32 H 0.03 0.65 7.08 -51.93 -0.37 0.28 16 33 H 0.06 1.38 5.21 -51.93 -0.27 1.11 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.41 6.09 8.08 -40.82 -0.33 5.76 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 38 H 0.07 0.80 7.25 -51.93 -0.38 0.43 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 42 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 43 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 44 H 0.10 2.44 7.09 -51.93 -0.37 2.07 16 45 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 46 H 0.06 1.18 6.14 -51.93 -0.32 0.86 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -31.08 373.08 -7.91 -38.99 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.07 Total: 7.16 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.24 Total: 1.65 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.30 Total: -48.77 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.14 Total: -21.28 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.08 -7.91 -38.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124001420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.763 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds