Wall clock time and date at job start Tue Mar 31 2020 13:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47475 * 2 1 4 4 C 1.46504 * 119.99829 * 274.81022 * 3 2 1 5 5 C 1.50700 * 109.46714 * 263.69607 * 4 3 2 6 6 H 1.08003 * 120.00668 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00202 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00685 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99765 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47386 * 89.99452 * 9 7 5 11 11 H 1.48497 * 109.47385 * 209.99700 * 9 7 5 12 12 H 1.48502 * 109.47085 * 329.99761 * 9 7 5 13 13 C 1.34775 * 120.00245 * 94.79982 * 3 2 1 14 14 O 1.21360 * 119.99828 * 355.40921 * 13 3 2 15 15 C 1.49356 * 119.99818 * 175.40070 * 13 3 2 16 16 O 1.21369 * 120.00238 * 0.16941 * 15 13 3 17 17 N 1.34785 * 119.99643 * 180.16881 * 15 13 3 18 18 C 1.39721 * 119.99695 * 174.68650 * 17 15 13 19 19 C 1.38928 * 120.07888 * 128.12386 * 18 17 15 20 20 C 1.50703 * 120.03386 * 359.97247 * 19 18 17 21 21 C 1.38093 * 119.92560 * 179.67488 * 19 18 17 22 22 C 1.38294 * 120.07228 * 0.61940 * 21 19 18 23 23 C 1.50707 * 119.92045 * 179.70116 * 22 21 19 24 24 C 1.38291 * 120.15502 * 359.67390 * 22 21 19 25 25 C 1.38096 * 120.07363 * 0.02562 * 24 22 21 26 26 C 1.50700 * 120.03639 * 180.02562 * 25 24 22 27 27 H 1.09001 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46913 * 300.00364 * 1 2 3 29 29 H 1.08998 * 109.46733 * 60.00548 * 1 2 3 30 30 H 1.09003 * 109.47567 * 239.99582 * 2 1 3 31 31 H 1.09006 * 109.47121 * 119.99988 * 2 1 3 32 32 H 1.08996 * 109.47551 * 23.69468 * 4 3 2 33 33 H 1.08998 * 109.47514 * 143.70196 * 4 3 2 34 34 H 0.96988 * 120.00447 * 180.02562 * 8 7 5 35 35 H 0.96994 * 119.99900 * 354.95381 * 17 15 13 36 36 H 1.09000 * 109.47214 * 94.82741 * 20 19 18 37 37 H 1.09006 * 109.46653 * 214.82033 * 20 19 18 38 38 H 1.08998 * 109.47165 * 334.82333 * 20 19 18 39 39 H 1.08001 * 119.96645 * 180.33802 * 21 19 18 40 40 H 1.08996 * 109.47402 * 269.97149 * 23 22 21 41 41 H 1.08995 * 109.47402 * 29.97708 * 23 22 21 42 42 H 1.09001 * 109.46766 * 149.97729 * 23 22 21 43 43 H 1.08003 * 119.96170 * 180.02562 * 24 22 21 44 44 H 1.09002 * 109.47230 * 277.81464 * 26 25 24 45 45 H 1.09000 * 109.47440 * 37.80613 * 26 25 24 46 46 H 1.09002 * 109.47303 * 157.81048 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1623 2.1072 -1.2643 5 6 3.5896 2.0121 -1.7384 6 1 4.3168 1.4652 -1.1565 7 6 3.9671 2.6224 -2.9157 8 7 5.2128 2.5399 -3.3293 9 14 2.7094 3.5678 -3.9227 10 1 2.6888 4.9862 -3.4837 11 1 3.0743 3.4998 -5.3606 12 1 1.3652 2.9687 -3.7244 13 6 2.3352 1.9839 1.1631 14 8 2.1376 1.4133 2.2157 15 6 2.9295 3.3541 1.1563 16 8 3.1244 3.9260 0.1037 17 7 3.2494 3.9556 2.3194 18 6 3.9064 5.1887 2.3105 19 6 3.4011 6.2522 3.0479 20 6 2.1426 6.0776 3.8584 21 6 4.0567 7.4675 3.0422 22 6 5.2080 7.6304 2.2934 23 6 5.9170 8.9603 2.2844 24 6 5.7104 6.5757 1.5535 25 6 5.0632 5.3558 1.5595 26 6 5.6118 4.2069 0.7533 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.5012 1.6693 -2.0121 33 1 1.8984 3.1540 -1.1143 34 1 5.4784 2.9696 -4.1573 35 1 3.0270 3.5306 3.1624 36 1 2.4043 5.8249 4.8859 37 1 1.5714 7.0060 3.8468 38 1 1.5420 5.2760 3.4287 39 1 3.6675 8.2931 3.6195 40 1 5.5227 9.5768 1.4767 41 1 5.7566 9.4641 3.2375 42 1 6.9846 8.8017 2.1324 43 1 6.6099 6.7063 0.9701 44 1 5.2894 4.3038 -0.2834 45 1 6.7008 4.2191 0.7975 46 1 5.2421 3.2666 1.1624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124001420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:15 Heat of formation + Delta-G solvation = -53.475051 kcal Electronic energy + Delta-G solvation = -28003.330945 eV Core-core repulsion = 24278.666461 eV Total energy + Delta-G solvation = -3724.664483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22530 -40.76521 -39.20138 -37.48157 -35.99838 -34.63743 -34.49725 -33.04330 -32.20061 -29.62877 -28.87345 -27.83822 -27.63398 -25.71556 -24.60709 -23.30703 -21.95828 -21.27385 -20.73024 -19.11622 -18.92522 -18.35257 -17.55112 -17.35629 -16.65110 -16.38737 -15.94881 -15.47546 -15.32531 -15.05621 -14.90745 -14.73135 -14.69432 -14.38020 -14.04901 -13.97905 -13.87944 -13.83783 -13.55126 -13.52635 -13.23906 -13.20563 -12.71227 -12.63542 -12.60307 -12.22618 -12.20306 -12.09535 -12.06369 -12.00309 -11.88786 -11.63532 -10.94343 -10.74096 -10.25401 -9.64765 -9.50131 -9.07688 -8.22942 -6.22712 0.14261 0.41356 0.59894 1.33606 1.40281 1.42829 1.47234 2.24165 2.37628 2.57182 2.72501 3.14654 3.40341 3.81395 3.83234 3.95052 4.12462 4.31568 4.32321 4.41126 4.46072 4.47471 4.50864 4.67079 4.68326 4.71378 4.76340 4.80892 4.88625 4.89853 4.90272 4.99424 5.02206 5.12514 5.24311 5.28336 5.32557 5.41271 5.46429 5.50807 5.52630 5.62092 5.67802 6.05369 6.10265 6.15968 6.39719 6.72250 6.79698 7.10110 7.37761 8.93477 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011728 B = 0.005403 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.915294 B = 5181.447635 C = 6752.279545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.102 3.898 3 N -0.562 5.562 4 C 0.210 3.790 5 C -0.499 4.499 6 H 0.028 0.972 7 C 0.028 3.972 8 N -0.943 5.943 9 Si 0.931 3.069 10 H -0.282 1.282 11 H -0.284 1.284 12 H -0.240 1.240 13 C 0.506 3.494 14 O -0.557 6.557 15 C 0.489 3.511 16 O -0.476 6.476 17 N -0.645 5.645 18 C 0.109 3.891 19 C -0.090 4.090 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.085 4.085 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.084 4.084 26 C -0.092 4.092 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.263 0.737 35 H 0.422 0.578 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.158 0.842 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.127 0.873 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 8.739 13.732 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 N -0.292 5.292 4 C 0.089 3.911 5 C -0.538 4.538 6 H 0.046 0.954 7 C -0.170 4.170 8 N -0.584 5.584 9 Si 0.755 3.245 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.163 1.163 13 C 0.288 3.712 14 O -0.438 6.438 15 C 0.271 3.729 16 O -0.347 6.347 17 N -0.295 5.295 18 C 0.016 3.984 19 C -0.092 4.092 20 C -0.167 4.167 21 C -0.134 4.134 22 C -0.085 4.085 23 C -0.165 4.165 24 C -0.149 4.149 25 C -0.086 4.086 26 C -0.149 4.149 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.261 0.739 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.175 0.825 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.145 0.855 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.936 8.808 13.302 17.022 hybrid contribution 0.206 -0.260 -0.737 0.808 sum -5.730 8.548 12.565 16.242 Atomic orbital electron populations 1.22037 0.93505 1.03725 1.01865 1.21730 0.96063 0.80690 1.03506 1.48006 1.59762 1.14730 1.06711 1.20008 0.96348 0.93549 0.81190 1.21113 0.94064 1.32310 1.06267 0.95415 1.25455 0.96661 0.96426 0.98488 1.70023 1.18572 1.46236 1.23521 0.85977 0.81153 0.79579 0.77762 1.20767 1.20937 1.16305 1.19967 0.79740 0.87035 0.84452 1.90635 1.55787 1.66691 1.30721 1.20307 0.80601 0.87447 0.84506 1.90907 1.48675 1.64695 1.30374 1.42908 1.58023 1.19703 1.08891 1.17490 0.92834 0.85991 1.02073 1.20140 0.97903 0.91860 0.99307 1.20789 0.93039 1.03516 0.99383 1.21058 0.95210 0.96736 1.00436 1.20252 0.96000 0.96442 0.95849 1.20817 0.99967 0.92001 1.03703 1.20931 1.01146 0.91847 1.00931 1.20008 0.94152 0.96518 0.97918 1.20610 0.99902 0.95159 0.99227 0.88726 0.93102 0.92437 0.89704 0.90157 0.93782 0.93007 0.92813 0.73941 0.89037 0.89327 0.92723 0.82452 0.90621 0.89428 0.91066 0.85463 0.92486 0.91628 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 10.24 71.98 0.74 -3.33 16 2 C 0.10 3.42 6.12 86.38 0.53 3.95 16 3 N -0.56 -23.37 2.47 -827.85 -2.05 -25.42 16 4 C 0.21 9.83 3.85 85.63 0.33 10.16 16 5 C -0.50 -27.97 8.41 25.60 0.22 -27.76 16 6 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 7 C 0.03 1.59 5.47 84.65 0.46 2.05 16 8 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 9 Si 0.93 44.48 27.47 68.60 1.88 46.36 16 10 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 13 C 0.51 21.05 7.67 87.24 0.67 21.72 16 14 O -0.56 -22.67 16.03 -3.28 -0.05 -22.72 16 15 C 0.49 20.39 5.80 87.24 0.51 20.90 16 16 O -0.48 -22.97 9.25 -3.31 -0.03 -23.00 16 17 N -0.64 -22.12 3.87 -304.83 -1.18 -23.29 16 18 C 0.11 3.63 5.84 38.21 0.22 3.85 16 19 C -0.09 -2.34 5.90 -19.73 -0.12 -2.46 16 20 C -0.11 -2.14 9.73 71.24 0.69 -1.44 16 21 C -0.12 -2.59 9.37 22.25 0.21 -2.38 16 22 C -0.09 -2.05 5.88 -19.84 -0.12 -2.17 16 23 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 24 C -0.13 -3.98 9.38 22.25 0.21 -3.77 16 25 C -0.08 -3.06 5.48 -19.73 -0.11 -3.17 16 26 C -0.09 -3.93 8.22 71.24 0.59 -3.34 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 31 H 0.08 2.67 7.35 -2.38 -0.02 2.65 16 32 H 0.04 1.94 7.08 -2.39 -0.02 1.92 16 33 H 0.05 2.54 5.21 -2.39 -0.01 2.52 16 34 H 0.26 15.40 8.31 -92.72 -0.77 14.63 16 35 H 0.42 12.48 8.08 -92.71 -0.75 11.73 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.36 8.12 -2.38 -0.02 1.34 16 38 H 0.05 1.20 7.25 -2.39 -0.02 1.18 16 39 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.04 8.08 -2.39 -0.02 1.02 16 42 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 43 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 44 H 0.06 2.95 7.09 -2.39 -0.02 2.93 16 45 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 46 H 0.04 1.67 6.14 -2.39 -0.01 1.66 16 Total: -1.00 -71.49 373.08 4.80 -66.69 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.19 Total: 27.72 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 5.74 Total: 11.75 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -2.93 Total: -106.80 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -0.08 Total: -45.72 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -71.49 4.80 -66.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124001420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.212 kcal (2) G-P(sol) polarization free energy of solvation -71.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds