Wall clock time and date at job start Tue Mar 31 2020 13:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46909 * 109.46741 * 2 1 4 4 C 1.46901 * 110.99670 * 165.13458 * 3 2 1 5 5 C 1.50706 * 109.47323 * 293.95205 * 4 3 2 6 6 H 1.07996 * 119.99494 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00242 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00447 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00092 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47671 * 89.99422 * 9 7 5 11 11 H 1.48505 * 109.47285 * 209.99953 * 9 7 5 12 12 H 1.48507 * 109.46753 * 329.99476 * 9 7 5 13 13 C 1.46890 * 111.00015 * 289.08372 * 3 2 1 14 14 H 1.09000 * 110.43384 * 49.41470 * 13 3 2 15 15 C 1.54626 * 110.49308 * 286.72741 * 13 3 2 16 16 C 1.54473 * 101.76772 * 266.12133 * 15 13 3 17 17 N 1.46764 * 105.47363 * 334.57933 * 16 15 13 18 18 C 1.40121 * 124.35438 * 196.99540 * 17 16 15 19 19 C 1.38723 * 120.08913 * 270.00460 * 18 17 16 20 20 C 1.38201 * 119.98508 * 179.97438 * 19 18 17 21 21 C 1.38274 * 120.16307 * 0.02595 * 20 19 18 22 22 C 1.38245 * 120.18220 * 359.96938 * 21 20 19 23 23 C 1.38557 * 120.00876 * 359.73028 * 22 21 20 24 24 O 1.35982 * 120.08280 * 180.30051 * 23 22 21 25 25 C 1.42904 * 116.99631 * 0.26891 * 24 23 22 26 26 C 1.34426 * 111.29784 * 17.01774 * 17 16 15 27 27 O 1.21293 * 124.93955 * 179.62831 * 26 17 16 28 28 H 1.08997 * 109.46708 * 185.59557 * 1 2 3 29 29 H 1.08999 * 109.46624 * 65.59918 * 1 2 3 30 30 H 1.08995 * 109.46912 * 305.59866 * 1 2 3 31 31 H 1.09003 * 109.47088 * 119.99189 * 2 1 3 32 32 H 1.08996 * 109.47586 * 240.00210 * 2 1 3 33 33 H 1.09000 * 109.47473 * 53.95366 * 4 3 2 34 34 H 1.09005 * 109.47142 * 173.95434 * 4 3 2 35 35 H 0.97000 * 120.00871 * 180.02562 * 8 7 5 36 36 H 1.09007 * 110.96769 * 24.24081 * 15 13 3 37 37 H 1.08998 * 110.97184 * 147.99470 * 15 13 3 38 38 H 1.08999 * 110.24990 * 215.58126 * 16 15 13 39 39 H 1.09001 * 110.24883 * 93.58000 * 16 15 13 40 40 H 1.07999 * 120.01004 * 0.02562 * 19 18 17 41 41 H 1.07995 * 119.91759 * 179.97438 * 20 19 18 42 42 H 1.08001 * 119.91150 * 180.02562 * 21 20 19 43 43 H 1.07993 * 119.99738 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.46977 * 180.02562 * 25 24 23 45 45 H 1.08999 * 109.47518 * 300.00568 * 25 24 23 46 46 H 1.09012 * 109.46747 * 60.00668 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4448 1.4396 0.3519 5 6 3.6271 0.9950 1.7802 6 1 2.7699 0.7009 2.3677 7 6 4.8881 0.9626 2.3367 8 7 5.0471 0.5751 3.5833 9 14 6.3708 1.4706 1.3203 10 1 6.6069 2.9276 1.4831 11 1 7.5671 0.7207 1.7808 12 1 6.1171 1.1671 -0.1111 13 6 1.7723 2.0308 -1.2960 14 1 0.7370 1.8835 -1.6032 15 6 2.7414 1.4813 -2.3683 16 6 3.8926 2.5096 -2.3092 17 7 3.2871 3.7466 -1.8021 18 6 3.8733 5.0149 -1.9076 19 6 4.7112 5.4794 -0.9043 20 6 5.2887 6.7304 -1.0108 21 6 5.0330 7.5219 -2.1154 22 6 4.1991 7.0658 -3.1192 23 6 3.6212 5.8102 -3.0230 24 8 2.8056 5.3576 -4.0124 25 6 2.5925 6.2273 -5.1262 26 6 2.0980 3.5064 -1.2230 27 8 1.3890 4.3501 -0.7164 28 1 -0.3633 -1.0228 0.1002 29 1 -0.3632 0.4246 -0.9359 30 1 -0.3633 0.5982 0.8356 31 1 1.8934 -0.5137 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 4.0077 0.7800 -0.3086 34 1 3.8078 2.4614 0.2403 35 1 5.9342 0.5526 3.9750 36 1 3.0941 0.4850 -2.1014 37 1 2.2725 1.4767 -3.3522 38 1 4.3048 2.6721 -3.3051 39 1 4.6719 2.1649 -1.6294 40 1 4.9130 4.8631 -0.0406 41 1 5.9405 7.0911 -0.2289 42 1 5.4868 8.4988 -2.1946 43 1 4.0018 7.6863 -3.9808 44 1 1.9243 5.7461 -5.8402 45 1 2.1439 7.1583 -4.7796 46 1 3.5468 6.4410 -5.6080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151629391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:58 Heat of formation + Delta-G solvation = -39.851726 kcal Electronic energy + Delta-G solvation = -28325.182788 eV Core-core repulsion = 24601.109056 eV Total energy + Delta-G solvation = -3724.073732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32927 -40.85991 -38.64910 -38.32736 -36.94723 -34.81004 -33.36410 -31.70007 -31.24875 -30.19286 -29.32983 -28.11249 -27.21706 -24.48197 -23.78204 -23.51367 -23.19075 -21.42171 -20.41501 -19.33666 -19.16463 -18.26911 -17.65159 -17.22241 -16.91774 -16.66924 -16.13136 -16.07092 -15.55681 -15.49035 -15.34925 -15.23072 -14.80934 -14.57039 -14.41752 -14.32767 -14.00016 -13.77250 -13.59132 -13.15299 -13.05351 -13.00615 -12.71813 -12.66762 -12.43570 -12.21563 -12.12888 -12.07594 -12.05187 -11.86699 -11.62397 -11.42489 -11.00510 -10.80392 -9.98922 -9.98472 -9.25751 -9.00558 -8.30442 -6.33217 0.11127 0.32915 1.27768 1.29743 1.38012 1.42185 1.89721 2.28261 2.29618 2.60160 3.02331 3.17612 3.36198 3.59323 3.79567 3.88512 3.91565 4.04902 4.16286 4.25420 4.32410 4.36334 4.38063 4.41512 4.44657 4.49017 4.55021 4.67079 4.70122 4.70943 4.76526 4.88871 4.91701 5.01366 5.07725 5.17743 5.26892 5.28630 5.41438 5.44031 5.51795 5.58515 5.76262 5.90972 5.98882 6.31178 6.37219 6.58114 6.72812 7.14339 7.29292 8.86277 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012441 B = 0.005631 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.118918 B = 4971.549069 C = 6462.591114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 N -0.531 5.531 4 C 0.177 3.823 5 C -0.516 4.516 6 H 0.037 0.963 7 C 0.013 3.987 8 N -0.946 5.946 9 Si 0.932 3.068 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.237 1.237 13 C 0.055 3.945 14 H 0.126 0.874 15 C -0.151 4.151 16 C 0.100 3.900 17 N -0.566 5.566 18 C 0.078 3.922 19 C -0.100 4.100 20 C -0.152 4.152 21 C -0.065 4.065 22 C -0.199 4.199 23 C 0.125 3.875 24 O -0.330 6.330 25 C 0.017 3.983 26 C 0.530 3.470 27 O -0.566 6.566 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.009 0.991 34 H 0.013 0.987 35 H 0.266 0.734 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.147 0.853 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.116 0.884 45 H 0.063 0.937 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 9.792 -22.934 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 N -0.257 5.257 4 C 0.050 3.950 5 C -0.555 4.555 6 H 0.055 0.945 7 C -0.185 4.185 8 N -0.586 5.586 9 Si 0.756 3.244 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.160 1.160 13 C -0.057 4.057 14 H 0.144 0.856 15 C -0.190 4.190 16 C -0.021 4.021 17 N -0.296 5.296 18 C -0.012 4.012 19 C -0.120 4.120 20 C -0.171 4.171 21 C -0.083 4.083 22 C -0.218 4.218 23 C 0.078 3.922 24 O -0.244 6.244 25 C -0.077 4.077 26 C 0.319 3.681 27 O -0.443 6.443 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.165 0.835 42 H 0.187 0.813 43 H 0.184 0.816 44 H 0.134 0.866 45 H 0.081 0.919 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.637 10.311 -22.212 24.497 hybrid contribution 1.210 -0.198 0.171 1.238 sum 0.573 10.112 -22.041 24.257 Atomic orbital electron populations 1.21742 0.93853 1.02137 1.01769 1.22056 0.96438 0.87361 1.01161 1.61902 1.19209 1.18786 1.25766 1.20022 0.85289 0.95079 0.94620 1.21267 0.93432 1.43582 0.97173 0.94518 1.25758 1.01921 0.94898 0.95911 1.70040 1.23934 1.49664 1.15002 0.85950 0.78841 0.78748 0.80899 1.19873 1.20383 1.16013 1.22499 1.02367 0.90166 0.90623 0.85591 1.23235 0.95564 0.99197 1.01024 1.22405 0.96654 0.82660 1.00391 1.45476 1.19578 1.06141 1.58385 1.17069 1.01844 0.86827 0.95449 1.21354 0.96041 0.97668 0.96902 1.21264 1.02129 0.93194 1.00486 1.21446 0.95053 1.00336 0.91472 1.21554 1.02204 0.94745 1.03292 1.19367 0.91435 0.93203 0.88206 1.86120 1.62599 1.45658 1.30002 1.23399 1.03086 0.94885 0.86294 1.21296 0.80123 0.91453 0.75205 1.90605 1.54257 1.53391 1.46071 0.90455 0.91651 0.94139 0.92225 0.92881 0.97330 0.96880 0.92464 0.88222 0.86250 0.87953 0.92284 0.87806 0.83518 0.81333 0.81583 0.86552 0.91884 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.85 71.98 0.71 -3.42 16 2 C 0.06 2.08 5.39 86.30 0.46 2.54 16 3 N -0.53 -22.65 4.45 -875.54 -3.89 -26.55 16 4 C 0.18 8.49 1.98 85.56 0.17 8.66 16 5 C -0.52 -30.41 8.85 25.60 0.23 -30.19 16 6 H 0.04 2.43 7.48 -2.91 -0.02 2.41 16 7 C 0.01 0.74 5.47 84.65 0.46 1.21 16 8 N -0.95 -59.95 13.96 21.44 0.30 -59.65 16 9 Si 0.93 43.94 27.47 68.60 1.88 45.83 16 10 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.24 -9.94 6.25 99.48 0.62 -9.32 16 13 C 0.06 1.96 3.01 44.91 0.14 2.09 16 14 H 0.13 3.95 6.50 -2.39 -0.02 3.94 16 15 C -0.15 -4.03 5.95 31.65 0.19 -3.84 16 16 C 0.10 3.02 6.28 86.83 0.55 3.56 16 17 N -0.57 -20.65 2.27 -627.25 -1.42 -22.07 16 18 C 0.08 2.71 5.40 38.19 0.21 2.92 16 19 C -0.10 -3.42 9.96 22.38 0.22 -3.20 16 20 C -0.15 -3.86 10.04 22.27 0.22 -3.64 16 21 C -0.07 -1.26 10.04 22.28 0.22 -1.04 16 22 C -0.20 -4.07 9.04 22.35 0.20 -3.87 16 23 C 0.13 3.51 6.70 22.60 0.15 3.66 16 24 O -0.33 -8.48 10.24 -93.35 -0.96 -9.43 16 25 C 0.02 0.24 9.81 113.37 1.11 1.35 16 26 C 0.53 22.22 6.58 87.90 0.58 22.80 16 27 O -0.57 -28.44 17.71 -3.07 -0.05 -28.49 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.68 6.79 -2.39 -0.02 1.66 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 2.60 6.59 -2.39 -0.02 2.58 16 32 H 0.05 1.63 6.64 -2.39 -0.02 1.61 16 33 H 0.01 0.41 5.18 -2.39 -0.01 0.40 16 34 H 0.01 0.67 5.31 -2.38 -0.01 0.66 16 35 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.10 2.59 5.86 -2.38 -0.01 2.58 16 37 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.06 2.01 5.96 -2.39 -0.01 2.00 16 40 H 0.10 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.17 2.11 6.30 -2.91 -0.02 2.09 16 44 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 0.78 7.65 -2.39 -0.02 0.76 16 46 H 0.07 0.73 7.68 -2.38 -0.02 0.71 16 Total: -1.00 -82.27 362.03 2.58 -79.68 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.90 Total: 21.08 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 5.82 Total: -0.40 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -5.02 Total: -108.26 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -1.01 Total: -37.93 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -82.27 2.58 -79.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151629391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.832 kcal (2) G-P(sol) polarization free energy of solvation -82.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds