Wall clock time and date at job start Tue Mar 31 2020 13:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47422 * 2 1 4 4 C 1.46506 * 119.99701 * 90.00143 * 3 2 1 5 5 C 1.50700 * 109.46787 * 90.00103 * 4 3 2 6 6 H 1.08003 * 119.99954 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00013 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99474 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00400 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46725 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47425 * 119.99827 * 9 7 5 12 12 H 1.48498 * 109.46809 * 240.00163 * 9 7 5 13 13 C 1.34771 * 120.00333 * 270.00860 * 3 2 1 14 14 O 1.21285 * 120.00102 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99819 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.46958 * 175.02434 * 15 13 3 17 17 C 1.39854 * 111.00206 * 303.73556 * 16 15 13 18 18 C 1.39137 * 118.58837 * 324.72427 * 17 16 15 19 19 C 1.38068 * 120.24321 * 180.16428 * 18 17 16 20 20 C 1.38251 * 120.11023 * 0.05408 * 19 18 17 21 21 C 1.38181 * 120.03605 * 359.87053 * 20 19 18 22 22 C 1.38781 * 120.20214 * 0.02562 * 21 20 19 23 23 O 1.36154 * 118.75231 * 180.22510 * 22 21 20 24 24 C 1.43130 * 116.69003 * 194.70761 * 23 22 21 25 25 C 1.46759 * 111.00363 * 69.13077 * 16 15 13 26 26 H 1.09000 * 109.62002 * 304.84649 * 25 16 15 27 27 C 1.53005 * 109.62024 * 65.20036 * 25 16 15 28 28 H 1.09001 * 109.46931 * 299.99612 * 1 2 3 29 29 H 1.08996 * 109.47367 * 59.99282 * 1 2 3 30 30 H 1.08994 * 109.47528 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47856 * 120.00654 * 2 1 3 32 32 H 1.09001 * 109.46931 * 240.00388 * 2 1 3 33 33 H 1.08997 * 109.47259 * 210.00161 * 4 3 2 34 34 H 1.09002 * 109.46743 * 330.00520 * 4 3 2 35 35 H 0.97003 * 119.99628 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.47586 * 295.02219 * 15 13 3 37 37 H 1.08995 * 109.47176 * 55.02696 * 15 13 3 38 38 H 1.08003 * 119.87663 * 0.18114 * 18 17 16 39 39 H 1.07999 * 119.94309 * 180.02562 * 19 18 17 40 40 H 1.08000 * 119.98248 * 179.91142 * 20 19 18 41 41 H 1.07997 * 119.89681 * 180.02562 * 21 20 19 42 42 H 1.08999 * 109.78035 * 195.14987 * 24 23 22 43 43 H 1.09001 * 109.77417 * 74.35054 * 24 23 22 44 44 H 1.09008 * 109.46502 * 60.00174 * 27 25 16 45 45 H 1.08994 * 109.47397 * 180.02562 * 27 25 16 46 46 H 1.09004 * 109.47276 * 300.00752 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 3.6859 1.8349 1.7037 6 1 4.3429 1.2307 1.0956 7 6 4.1496 2.3902 2.8774 8 7 3.3496 3.1263 3.6176 9 14 5.9140 2.0972 3.4163 10 1 6.6012 1.2410 2.4163 11 1 6.6213 3.3984 3.5240 12 1 5.9219 1.4186 4.7371 13 6 2.2429 2.0167 -1.1671 14 8 2.6477 3.1600 -1.1671 15 6 1.9920 1.3062 -2.4722 16 7 2.1953 2.2421 -3.5861 17 6 1.3810 3.3706 -3.4475 18 6 0.1124 3.2129 -2.8982 19 6 -0.7212 4.3033 -2.7488 20 6 -0.2991 5.5585 -3.1458 21 6 0.9597 5.7246 -3.6909 22 6 1.8043 4.6339 -3.8425 23 8 3.0401 4.8320 -4.3787 24 6 3.7458 3.6660 -4.8156 25 6 3.6127 2.5971 -3.7229 26 1 3.9848 2.9892 -2.7764 27 6 4.4173 1.3568 -4.1168 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 2.0957 3.1410 1.1386 34 1 1.5818 1.6875 2.0284 35 1 3.6757 3.5167 4.4436 36 1 2.6842 0.4698 -2.5696 37 1 0.9677 0.9343 -2.4924 38 1 -0.2213 2.2339 -2.5873 39 1 -1.7047 4.1754 -2.3214 40 1 -0.9534 6.4098 -3.0293 41 1 1.2872 6.7062 -4.0000 42 1 4.7975 3.9073 -4.9693 43 1 3.3113 3.2988 -5.7454 44 1 4.0475 0.9705 -5.0667 45 1 5.4695 1.6230 -4.2173 46 1 4.3080 0.5931 -3.3468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173803922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:36 Heat of formation + Delta-G solvation = -48.816199 kcal Electronic energy + Delta-G solvation = -28567.353787 eV Core-core repulsion = 24842.891327 eV Total energy + Delta-G solvation = -3724.462460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.47097 -40.49586 -38.44743 -37.80644 -36.73633 -34.94591 -33.34081 -31.66969 -31.37238 -30.73326 -29.04589 -28.17142 -26.63822 -24.90990 -24.15470 -23.76120 -22.93164 -21.04877 -19.88200 -19.37910 -18.67503 -18.27198 -17.73833 -17.57254 -17.05753 -16.40943 -16.27623 -15.85095 -15.61101 -15.45218 -15.05037 -14.88700 -14.68261 -14.61935 -14.46805 -14.13370 -13.63588 -13.56856 -13.27593 -13.23237 -13.11641 -12.89970 -12.77335 -12.66251 -12.52982 -12.42357 -12.36938 -12.17514 -11.91734 -11.85853 -11.71860 -11.43616 -11.35691 -10.68560 -10.45742 -9.44289 -9.42326 -8.54006 -8.25567 -6.40529 0.40086 0.50822 1.32160 1.34663 1.45975 1.78510 2.25324 2.29803 2.41500 2.53435 3.01155 3.04091 3.49419 3.64523 3.68512 3.91308 4.03241 4.14247 4.15152 4.24053 4.26534 4.37196 4.42426 4.43123 4.48309 4.55954 4.62371 4.65417 4.76911 4.85467 4.93094 4.97279 5.01213 5.04042 5.15251 5.19783 5.22879 5.30320 5.38965 5.55215 5.59321 5.67503 5.83289 5.85425 6.00205 6.03635 6.47873 6.67131 6.78035 7.25417 7.45961 8.81559 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.004774 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.111113 B = 5863.990764 C = 6173.246324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.599 5.599 4 C 0.267 3.733 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.472 3.528 14 O -0.580 6.580 15 C 0.039 3.961 16 N -0.454 5.454 17 C 0.054 3.946 18 C -0.138 4.138 19 C -0.133 4.133 20 C -0.120 4.120 21 C -0.146 4.146 22 C 0.072 3.928 23 O -0.337 6.337 24 C 0.065 3.935 25 C 0.023 3.977 26 H 0.045 0.955 27 C -0.134 4.134 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.102 0.898 33 H -0.010 1.010 34 H 0.018 0.982 35 H 0.266 0.734 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -6.833 -17.508 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.331 5.331 4 C 0.145 3.855 5 C -0.576 4.576 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.259 3.741 14 O -0.460 6.460 15 C -0.090 4.090 16 N -0.169 5.169 17 C -0.043 4.043 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.138 4.138 21 C -0.165 4.165 22 C 0.026 3.974 23 O -0.252 6.252 24 C -0.010 4.010 25 C -0.085 4.085 26 H 0.063 0.937 27 C -0.191 4.191 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.008 0.992 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.170 0.830 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.386 -6.285 -17.806 19.636 hybrid contribution 1.121 0.581 1.707 2.124 sum -4.265 -5.704 -16.099 17.604 Atomic orbital electron populations 1.22165 0.94504 1.03655 1.01635 1.21789 0.95417 0.81301 1.04060 1.48316 1.63602 1.15031 1.06105 1.18609 0.95136 0.91164 0.80551 1.21709 0.97820 1.31752 1.06368 0.92894 1.25870 1.02339 0.94516 0.96539 1.70070 1.37717 1.34311 1.14826 0.85389 0.79081 0.77933 0.78548 1.18900 1.21047 1.19297 1.22057 0.77806 0.87033 0.87229 1.90688 1.47611 1.20294 1.87455 1.22670 1.06726 0.95872 0.83750 1.59461 1.06573 1.12639 1.38231 1.18876 0.95036 0.89311 1.01099 1.21074 0.92986 1.00498 1.01276 1.21201 1.00790 0.92396 1.00816 1.21144 0.95342 0.98400 0.98956 1.20712 0.94065 0.97636 1.04086 1.18910 0.85521 0.93175 0.99795 1.86129 1.27488 1.35170 1.76374 1.23398 0.98582 0.82963 0.96070 1.22584 0.87549 0.98986 0.99352 0.93721 1.21772 0.99591 0.94726 1.03027 0.94451 0.92077 0.88365 0.90938 0.87951 0.99228 0.96361 0.92488 0.84731 0.84948 0.84701 0.83605 0.82991 0.84570 0.85062 0.89363 0.89349 0.90108 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.19 71.98 0.73 -3.01 16 2 C 0.10 2.78 5.86 86.38 0.51 3.28 16 3 N -0.60 -24.73 2.46 -826.14 -2.03 -26.76 16 4 C 0.27 14.51 5.16 85.63 0.44 14.95 16 5 C -0.54 -31.12 9.39 25.60 0.24 -30.88 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 9 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 C 0.47 19.05 6.42 87.66 0.56 19.62 16 14 O -0.58 -29.82 12.48 -3.05 -0.04 -29.86 16 15 C 0.04 1.08 3.69 85.56 0.32 1.40 16 16 N -0.45 -13.46 4.60 -674.78 -3.10 -16.56 16 17 C 0.05 1.86 3.91 38.25 0.15 2.01 16 18 C -0.14 -4.30 8.39 22.45 0.19 -4.11 16 19 C -0.13 -3.82 10.03 22.23 0.22 -3.60 16 20 C -0.12 -3.41 10.04 22.26 0.22 -3.19 16 21 C -0.15 -4.75 9.94 22.39 0.22 -4.52 16 22 C 0.07 2.62 6.47 22.57 0.15 2.76 16 23 O -0.34 -11.76 10.40 -95.31 -0.99 -12.75 16 24 C 0.06 1.71 6.55 72.13 0.47 2.18 16 25 C 0.02 0.66 2.26 45.09 0.10 0.77 16 26 H 0.04 1.80 5.94 -2.39 -0.01 1.79 16 27 C -0.13 -2.71 9.14 71.98 0.66 -2.05 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.28 7.13 -2.39 -0.02 1.26 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 32 H 0.10 2.15 6.58 -2.39 -0.02 2.13 16 33 H -0.01 -0.67 7.42 -2.39 -0.02 -0.69 16 34 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.14 3.01 5.59 -2.39 -0.01 3.00 16 37 H 0.13 2.94 5.17 -2.39 -0.01 2.93 16 38 H 0.14 3.60 6.11 -2.91 -0.02 3.58 16 39 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 41 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.25 6.36 -2.39 -0.02 1.24 16 Total: -1.00 -80.34 362.59 2.78 -77.56 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.98 Total: 21.46 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.65 Total: -3.57 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -4.85 Total: -100.18 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.03 Total: -42.61 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -80.34 2.78 -77.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173803922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.746 kcal (2) G-P(sol) polarization free energy of solvation -80.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds