Wall clock time and date at job start Tue Mar 31 2020 12:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.46720 * 2 1 4 4 C 1.47444 * 111.00358 * 53.87235 * 3 2 1 5 5 C 1.54316 * 107.23704 * 123.25745 * 4 3 2 6 6 C 1.55145 * 103.01764 * 22.28226 * 5 4 3 7 7 C 1.47853 * 110.99694 * 174.71490 * 3 2 1 8 8 H 1.08997 * 110.37227 * 332.56744 * 7 3 2 9 9 C 1.52992 * 110.37691 * 94.80493 * 7 3 2 10 10 N 1.46497 * 109.47089 * 298.76644 * 9 7 3 11 11 C 1.34778 * 119.99919 * 173.43928 * 10 9 7 12 12 O 1.21590 * 120.00029 * 359.97438 * 11 10 9 13 13 C 1.47535 * 119.99961 * 179.97438 * 11 10 9 14 14 C 1.39668 * 120.19603 * 359.73076 * 13 11 10 15 15 C 1.37837 * 119.91790 * 179.72098 * 14 13 11 16 16 C 1.38567 * 120.32337 * 0.54950 * 15 14 13 17 17 C 1.38023 * 120.40009 * 359.72323 * 16 15 14 18 18 C 1.38840 * 120.07428 * 359.97438 * 17 16 15 19 19 O 1.35524 * 120.15853 * 180.02562 * 18 17 16 20 20 C 1.34813 * 117.00260 * 5.77758 * 19 18 17 21 21 H 1.07997 * 119.99886 * 5.19981 * 20 19 18 22 22 C 1.38694 * 120.00025 * 185.19264 * 20 19 18 23 23 N 1.31523 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00220 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.46894 * 60.00522 * 24 22 20 26 26 H 1.48495 * 109.47513 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47358 * 300.00604 * 24 22 20 28 28 H 1.08999 * 109.46780 * 54.63275 * 1 2 3 29 29 H 1.09001 * 109.46830 * 174.62394 * 1 2 3 30 30 H 1.08995 * 109.47376 * 294.62464 * 1 2 3 31 31 H 1.08997 * 109.47360 * 239.99601 * 2 1 3 32 32 H 1.09004 * 109.46988 * 119.99913 * 2 1 3 33 33 H 1.09005 * 109.88444 * 242.66058 * 4 3 2 34 34 H 1.08995 * 109.88622 * 3.68459 * 4 3 2 35 35 H 1.08994 * 110.70641 * 140.66616 * 5 4 3 36 36 H 1.09002 * 110.70324 * 263.89857 * 5 4 3 37 37 H 1.08998 * 110.98665 * 206.25735 * 6 5 4 38 38 H 1.08998 * 110.98935 * 82.44209 * 6 5 4 39 39 H 1.08998 * 109.47437 * 178.76474 * 9 7 3 40 40 H 1.08999 * 109.47133 * 58.76733 * 9 7 3 41 41 H 0.96997 * 120.00172 * 353.15612 * 10 9 7 42 42 H 1.08001 * 120.03958 * 359.97438 * 14 13 11 43 43 H 1.07997 * 119.83424 * 180.27598 * 15 14 13 44 44 H 1.08001 * 119.79860 * 179.74392 * 16 15 14 45 45 H 1.08007 * 119.96391 * 179.97438 * 17 16 15 46 46 H 0.97001 * 119.99615 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4306 2.1537 1.1118 5 6 2.5989 2.7149 1.9492 6 6 3.7824 2.7090 0.9461 7 6 3.4921 1.4264 0.1271 8 1 3.8520 0.5454 0.6585 9 6 4.1437 1.5175 -1.2541 10 7 3.7899 0.3329 -2.0400 11 6 4.1423 0.2558 -3.3386 12 8 4.7533 1.1698 -3.8580 13 6 3.7865 -0.9374 -4.1299 14 6 3.0896 -1.9921 -3.5359 15 6 2.7551 -3.1017 -4.2821 16 6 3.1168 -3.1819 -5.6173 17 6 3.8106 -2.1499 -6.2162 18 6 4.1506 -1.0218 -5.4818 19 8 4.8313 -0.0072 -6.0683 20 6 5.0446 -0.1003 -7.3962 21 1 4.6070 -0.9124 -7.9577 22 6 5.8259 0.8470 -8.0411 23 7 6.3591 1.8357 -7.3571 24 14 6.1220 0.7177 -9.8809 25 1 4.8222 0.7771 -10.5969 26 1 6.9835 1.8431 -10.3240 27 1 6.7960 -0.5703 -10.1846 28 1 -0.3633 0.5948 -0.8380 29 1 -0.3633 -1.0232 -0.0963 30 1 -0.3634 0.4282 0.9341 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.8293 2.9734 0.7182 34 1 0.8106 1.5011 1.7263 35 1 2.3816 3.7295 2.2828 36 1 2.8106 2.0658 2.7989 37 1 4.7362 2.6314 1.4679 38 1 3.7585 3.5929 0.3088 39 1 5.2267 1.5693 -1.1422 40 1 3.7881 2.4121 -1.7653 41 1 3.3058 -0.3978 -1.6247 42 1 2.8096 -1.9364 -2.4944 43 1 2.2123 -3.9145 -3.8226 44 1 2.8540 -4.0571 -6.1929 45 1 4.0894 -2.2200 -7.2573 46 1 6.9058 2.4980 -7.8081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194091278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:54 Heat of formation + Delta-G solvation = -23.667450 kcal Electronic energy + Delta-G solvation = -27031.874706 eV Core-core repulsion = 23308.502778 eV Total energy + Delta-G solvation = -3723.371929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.90446 -39.23729 -37.78707 -36.28428 -34.08485 -33.62943 -32.29818 -30.94002 -29.50994 -28.87984 -28.71270 -25.61414 -25.14707 -23.40621 -22.37005 -21.33279 -20.89024 -20.21057 -19.63199 -18.00972 -17.56905 -16.77839 -16.19430 -15.59178 -15.25001 -14.78198 -14.60668 -14.43853 -14.16421 -14.06683 -13.86877 -13.68684 -13.41801 -13.32995 -13.01771 -12.57808 -12.47656 -12.37439 -11.85060 -11.69188 -11.66845 -11.41163 -11.31239 -11.25932 -11.24880 -11.09694 -10.92780 -10.85126 -10.82909 -10.73479 -10.43957 -9.54336 -8.84113 -8.76044 -8.44740 -8.38589 -8.21075 -7.26302 -6.40298 -4.00017 1.77303 2.36040 3.14460 3.16524 3.18918 3.67929 3.79926 3.85048 3.97115 4.41532 4.52694 4.70163 4.74226 4.86883 5.02421 5.05687 5.14623 5.15948 5.18986 5.28738 5.31256 5.43554 5.52640 5.59178 5.60862 5.64302 5.66817 5.77376 5.81583 5.85878 5.96072 6.03271 6.04079 6.10846 6.16835 6.29460 6.60184 6.74316 6.81974 6.95988 6.96048 7.09217 7.11085 7.28473 7.32272 7.73777 7.96567 8.22732 8.99272 9.21088 9.72582 10.73615 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.003462 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.161441 B = 8085.351540 C = 9441.899505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.043 3.957 3 N -0.521 5.521 4 C 0.039 3.961 5 C -0.142 4.142 6 C -0.121 4.121 7 C 0.060 3.940 8 H 0.059 0.941 9 C 0.141 3.859 10 N -0.739 5.739 11 C 0.553 3.447 12 O -0.503 6.503 13 C -0.225 4.225 14 C -0.039 4.039 15 C -0.231 4.231 16 C -0.052 4.052 17 C -0.238 4.238 18 C 0.189 3.811 19 O -0.123 6.123 20 C -0.404 4.404 21 H 0.093 0.907 22 C 0.045 3.955 23 N -0.833 5.833 24 Si 0.940 3.060 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.388 0.612 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.131 0.869 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 -3.679 16.700 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.085 4.085 3 N -0.246 5.246 4 C -0.088 4.088 5 C -0.180 4.180 6 C -0.160 4.160 7 C -0.049 4.049 8 H 0.077 0.923 9 C 0.016 3.984 10 N -0.397 5.397 11 C 0.343 3.657 12 O -0.377 6.377 13 C -0.229 4.229 14 C -0.058 4.058 15 C -0.250 4.250 16 C -0.071 4.071 17 C -0.257 4.257 18 C 0.130 3.870 19 O -0.021 6.021 20 C -0.480 4.480 21 H 0.110 0.890 22 C -0.163 4.163 23 N -0.464 5.464 24 Si 0.764 3.236 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.225 0.775 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.149 0.851 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.277 -2.304 15.850 18.029 hybrid contribution 0.047 -1.023 0.060 1.025 sum -8.230 -3.327 15.910 18.219 Atomic orbital electron populations 1.21890 0.94639 1.02103 1.02394 1.22387 0.96331 0.89373 1.00445 1.63586 1.05206 1.12255 1.43519 1.22882 0.96782 0.97983 0.91196 1.22780 0.95558 1.01711 0.97967 1.22678 0.98313 0.97772 0.97189 1.22881 0.87936 0.98170 0.95868 0.92319 1.21168 0.98150 0.89793 0.89244 1.45999 1.61502 1.20997 1.11193 1.18212 0.79463 0.87153 0.80920 1.90937 1.38484 1.38555 1.69759 1.18884 1.13155 0.97741 0.93169 1.20718 0.94910 0.92539 0.97632 1.20439 1.09777 0.99677 0.95105 1.20878 0.94829 0.96863 0.94481 1.21163 1.07631 0.95324 1.01582 1.19287 0.89743 0.87413 0.90607 1.84199 1.59103 1.35691 1.23119 1.21441 1.32894 1.13374 0.80253 0.88994 1.25373 0.95492 0.94948 1.00475 1.70122 1.28601 1.11326 1.36381 0.85805 0.78863 0.78386 0.80503 1.19368 1.20173 1.19414 0.91409 0.92057 0.92714 0.90555 0.94930 0.90495 0.92382 0.90644 0.91665 0.90503 0.89917 0.91922 0.90762 0.77540 0.87485 0.87356 0.87229 0.85107 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.55 37.16 0.35 -1.00 16 2 C 0.04 0.43 5.28 -3.82 -0.02 0.41 16 3 N -0.52 -5.83 4.87 -223.38 -1.09 -6.92 16 4 C 0.04 0.35 6.19 -2.84 -0.02 0.34 16 5 C -0.14 -1.12 6.94 -24.91 -0.17 -1.29 16 6 C -0.12 -1.13 6.50 -24.59 -0.16 -1.29 16 7 C 0.06 0.67 2.69 -66.18 -0.18 0.50 16 8 H 0.06 0.62 7.69 -51.93 -0.40 0.22 16 9 C 0.14 2.15 5.40 -4.05 -0.02 2.13 16 10 N -0.74 -12.67 5.29 -61.36 -0.32 -13.00 16 11 C 0.55 12.66 7.76 -12.47 -0.10 12.56 16 12 O -0.50 -14.21 15.15 -16.57 -0.25 -14.46 16 13 C -0.22 -5.04 5.89 -104.81 -0.62 -5.65 16 14 C -0.04 -0.69 9.54 -39.19 -0.37 -1.07 16 15 C -0.23 -3.87 10.03 -39.61 -0.40 -4.26 16 16 C -0.05 -0.93 10.03 -39.54 -0.40 -1.33 16 17 C -0.24 -5.21 9.12 -39.44 -0.36 -5.57 16 18 C 0.19 4.81 6.66 -38.60 -0.26 4.55 16 19 O -0.12 -3.71 7.84 -21.06 -0.17 -3.87 16 20 C -0.40 -11.62 9.44 30.90 0.29 -11.33 16 21 H 0.09 2.40 5.29 -52.49 -0.28 2.12 16 22 C 0.04 1.27 5.49 -17.52 -0.10 1.17 16 23 N -0.83 -25.45 13.67 55.48 0.76 -24.69 16 24 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.43 6.35 -51.93 -0.33 0.10 16 31 H 0.08 0.84 5.24 -51.93 -0.27 0.57 16 32 H 0.03 0.29 7.96 -51.93 -0.41 -0.12 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.46 5.92 -51.93 -0.31 0.16 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.30 8.11 -51.93 -0.42 0.87 16 41 H 0.39 5.55 3.55 -40.82 -0.15 5.40 16 42 H 0.11 1.49 6.23 -52.49 -0.33 1.17 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.13 2.82 5.71 -52.48 -0.30 2.52 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -34.98 365.72 -9.65 -44.63 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.55 Total: 8.17 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.52 Total: -11.13 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.65 Total: -44.61 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.42 Total: -18.33 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.98 -9.65 -44.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194091278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.959 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds