Wall clock time and date at job start Tue Mar 31 2020 12:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.46720 * 2 1 4 4 C 1.47444 * 111.00358 * 53.87235 * 3 2 1 5 5 C 1.54316 * 107.23704 * 123.25745 * 4 3 2 6 6 C 1.55145 * 103.01764 * 22.28226 * 5 4 3 7 7 C 1.47853 * 110.99694 * 174.71490 * 3 2 1 8 8 H 1.08997 * 110.37227 * 332.56744 * 7 3 2 9 9 C 1.52992 * 110.37691 * 94.80493 * 7 3 2 10 10 N 1.46497 * 109.47089 * 298.76644 * 9 7 3 11 11 C 1.34778 * 119.99919 * 173.43928 * 10 9 7 12 12 O 1.21590 * 120.00029 * 359.97438 * 11 10 9 13 13 C 1.47535 * 119.99961 * 179.97438 * 11 10 9 14 14 C 1.39668 * 120.19603 * 359.73076 * 13 11 10 15 15 C 1.37837 * 119.91790 * 179.72098 * 14 13 11 16 16 C 1.38567 * 120.32337 * 0.54950 * 15 14 13 17 17 C 1.38023 * 120.40009 * 359.72323 * 16 15 14 18 18 C 1.38840 * 120.07428 * 359.97438 * 17 16 15 19 19 O 1.35524 * 120.15853 * 180.02562 * 18 17 16 20 20 C 1.34813 * 117.00260 * 5.77758 * 19 18 17 21 21 H 1.07997 * 119.99886 * 5.19981 * 20 19 18 22 22 C 1.38694 * 120.00025 * 185.19264 * 20 19 18 23 23 N 1.31523 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00220 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.46894 * 60.00522 * 24 22 20 26 26 H 1.48495 * 109.47513 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47358 * 300.00604 * 24 22 20 28 28 H 1.08999 * 109.46780 * 54.63275 * 1 2 3 29 29 H 1.09001 * 109.46830 * 174.62394 * 1 2 3 30 30 H 1.08995 * 109.47376 * 294.62464 * 1 2 3 31 31 H 1.08997 * 109.47360 * 239.99601 * 2 1 3 32 32 H 1.09004 * 109.46988 * 119.99913 * 2 1 3 33 33 H 1.09005 * 109.88444 * 242.66058 * 4 3 2 34 34 H 1.08995 * 109.88622 * 3.68459 * 4 3 2 35 35 H 1.08994 * 110.70641 * 140.66616 * 5 4 3 36 36 H 1.09002 * 110.70324 * 263.89857 * 5 4 3 37 37 H 1.08998 * 110.98665 * 206.25735 * 6 5 4 38 38 H 1.08998 * 110.98935 * 82.44209 * 6 5 4 39 39 H 1.08998 * 109.47437 * 178.76474 * 9 7 3 40 40 H 1.08999 * 109.47133 * 58.76733 * 9 7 3 41 41 H 0.96997 * 120.00172 * 353.15612 * 10 9 7 42 42 H 1.08001 * 120.03958 * 359.97438 * 14 13 11 43 43 H 1.07997 * 119.83424 * 180.27598 * 15 14 13 44 44 H 1.08001 * 119.79860 * 179.74392 * 16 15 14 45 45 H 1.08007 * 119.96391 * 179.97438 * 17 16 15 46 46 H 0.97001 * 119.99615 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4306 2.1537 1.1118 5 6 2.5989 2.7149 1.9492 6 6 3.7824 2.7090 0.9461 7 6 3.4921 1.4264 0.1271 8 1 3.8520 0.5454 0.6585 9 6 4.1437 1.5175 -1.2541 10 7 3.7899 0.3329 -2.0400 11 6 4.1423 0.2558 -3.3386 12 8 4.7533 1.1698 -3.8580 13 6 3.7865 -0.9374 -4.1299 14 6 3.0896 -1.9921 -3.5359 15 6 2.7551 -3.1017 -4.2821 16 6 3.1168 -3.1819 -5.6173 17 6 3.8106 -2.1499 -6.2162 18 6 4.1506 -1.0218 -5.4818 19 8 4.8313 -0.0072 -6.0683 20 6 5.0446 -0.1003 -7.3962 21 1 4.6070 -0.9124 -7.9577 22 6 5.8259 0.8470 -8.0411 23 7 6.3591 1.8357 -7.3571 24 14 6.1220 0.7177 -9.8809 25 1 4.8222 0.7771 -10.5969 26 1 6.9835 1.8431 -10.3240 27 1 6.7960 -0.5703 -10.1846 28 1 -0.3633 0.5948 -0.8380 29 1 -0.3633 -1.0232 -0.0963 30 1 -0.3634 0.4282 0.9341 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.8293 2.9734 0.7182 34 1 0.8106 1.5011 1.7263 35 1 2.3816 3.7295 2.2828 36 1 2.8106 2.0658 2.7989 37 1 4.7362 2.6314 1.4679 38 1 3.7585 3.5929 0.3088 39 1 5.2267 1.5693 -1.1422 40 1 3.7881 2.4121 -1.7653 41 1 3.3058 -0.3978 -1.6247 42 1 2.8096 -1.9364 -2.4944 43 1 2.2123 -3.9145 -3.8226 44 1 2.8540 -4.0571 -6.1929 45 1 4.0894 -2.2200 -7.2573 46 1 6.9058 2.4980 -7.8081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194091278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:53 Heat of formation + Delta-G solvation = -48.614947 kcal Electronic energy + Delta-G solvation = -27032.956511 eV Core-core repulsion = 23308.502778 eV Total energy + Delta-G solvation = -3724.453733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.36197 -40.50163 -39.48025 -38.02359 -35.62563 -34.41553 -34.31572 -32.43227 -30.68821 -30.54742 -29.49576 -27.42451 -26.50151 -24.65492 -23.57678 -22.94265 -21.87446 -21.26183 -21.00265 -19.84983 -19.21231 -17.92268 -17.62376 -17.00663 -16.49743 -16.26578 -16.16412 -15.90423 -15.64704 -15.46947 -15.31523 -15.13285 -14.64336 -14.39650 -14.21282 -14.03122 -13.99812 -13.53872 -13.39441 -13.01173 -12.84406 -12.70982 -12.49934 -12.46680 -12.39070 -12.22743 -12.13854 -12.09136 -12.01516 -11.73828 -11.56222 -11.44028 -10.81988 -10.59798 -10.06976 -9.76961 -9.23053 -9.03430 -8.43976 -6.15079 0.12629 0.72633 1.32339 1.45683 1.50585 2.11544 2.16662 2.29270 2.87656 2.90963 3.24180 3.45380 3.62776 3.72141 3.86745 4.05729 4.06503 4.16056 4.19748 4.29496 4.30463 4.33018 4.50664 4.56268 4.58856 4.63452 4.64474 4.73354 4.83703 4.95295 4.97170 5.00626 5.04692 5.07263 5.11142 5.13171 5.20005 5.34737 5.36947 5.47784 5.57370 5.61283 5.69009 5.96346 6.04096 6.16841 6.18566 6.69289 6.94989 7.50177 7.81352 8.76648 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.003462 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.161441 B = 8085.351540 C = 9441.899505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 N -0.546 5.546 4 C 0.039 3.961 5 C -0.132 4.132 6 C -0.122 4.122 7 C 0.070 3.930 8 H 0.077 0.923 9 C 0.139 3.861 10 N -0.712 5.712 11 C 0.545 3.455 12 O -0.572 6.572 13 C -0.245 4.245 14 C -0.031 4.031 15 C -0.199 4.199 16 C -0.040 4.040 17 C -0.257 4.257 18 C 0.149 3.851 19 O -0.189 6.189 20 C -0.429 4.429 21 H 0.107 0.893 22 C -0.022 4.022 23 N -0.906 5.906 24 Si 1.023 2.977 25 H -0.255 1.255 26 H -0.273 1.273 27 H -0.252 1.252 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.405 0.595 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.124 0.876 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.441 -7.491 19.033 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 N -0.272 5.272 4 C -0.088 4.088 5 C -0.170 4.170 6 C -0.161 4.161 7 C -0.039 4.039 8 H 0.095 0.905 9 C 0.014 3.986 10 N -0.369 5.369 11 C 0.335 3.665 12 O -0.451 6.451 13 C -0.250 4.250 14 C -0.050 4.050 15 C -0.217 4.217 16 C -0.058 4.058 17 C -0.276 4.276 18 C 0.094 3.906 19 O -0.091 6.091 20 C -0.505 4.505 21 H 0.124 0.876 22 C -0.221 4.221 23 N -0.542 5.542 24 Si 0.841 3.159 25 H -0.179 1.179 26 H -0.198 1.198 27 H -0.176 1.176 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.245 0.755 42 H 0.169 0.831 43 H 0.183 0.817 44 H 0.173 0.827 45 H 0.142 0.858 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.931 -6.203 18.269 22.174 hybrid contribution 0.576 -0.125 -0.343 0.682 sum -10.355 -6.328 17.926 21.647 Atomic orbital electron populations 1.21862 0.93766 1.02754 1.02218 1.22433 0.97061 0.88684 1.00595 1.63466 1.04962 1.13486 1.45266 1.22902 0.97243 0.97838 0.90836 1.22755 0.93875 1.02756 0.97621 1.22700 1.00005 0.96096 0.97276 1.22751 0.88192 0.99953 0.92966 0.90531 1.21294 0.98258 0.87812 0.91191 1.45800 1.59818 1.21900 1.09406 1.18591 0.78766 0.86720 0.82453 1.90913 1.41762 1.40921 1.71515 1.19313 1.14028 0.99106 0.92547 1.21220 0.92863 0.91092 0.99803 1.21165 1.06532 0.99813 0.94178 1.21436 0.92218 0.96590 0.95534 1.21321 1.09023 0.95728 1.01512 1.20082 0.89984 0.88182 0.92358 1.84196 1.62662 1.38605 1.23673 1.22005 1.33462 1.14153 0.80880 0.87623 1.26777 0.94869 0.94155 1.06331 1.70324 1.31472 1.13384 1.38973 0.84617 0.79268 0.78972 0.73054 1.17917 1.19762 1.17616 0.93418 0.90590 0.91465 0.91851 0.93006 0.91347 0.90692 0.89547 0.90021 0.89024 0.91467 0.92633 0.93844 0.75470 0.83081 0.81693 0.82667 0.85822 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.55 71.98 0.69 -1.50 16 2 C 0.04 0.68 5.28 86.30 0.46 1.14 16 3 N -0.55 -11.32 4.87 -860.64 -4.19 -15.51 16 4 C 0.04 0.61 6.19 86.65 0.54 1.15 16 5 C -0.13 -1.72 6.94 31.78 0.22 -1.50 16 6 C -0.12 -2.14 6.50 31.98 0.21 -1.93 16 7 C 0.07 1.49 2.69 45.38 0.12 1.61 16 8 H 0.08 1.39 7.69 -2.39 -0.02 1.37 16 9 C 0.14 4.42 5.40 86.38 0.47 4.88 16 10 N -0.71 -24.70 5.29 -466.29 -2.47 -27.16 16 11 C 0.54 26.24 7.76 86.69 0.67 26.91 16 12 O -0.57 -35.33 15.15 16.89 0.26 -35.08 16 13 C -0.25 -11.14 5.89 -19.99 -0.12 -11.26 16 14 C -0.03 -0.99 9.54 22.52 0.21 -0.78 16 15 C -0.20 -5.44 10.03 22.25 0.22 -5.22 16 16 C -0.04 -1.26 10.03 22.30 0.22 -1.03 16 17 C -0.26 -11.22 9.12 22.36 0.20 -11.02 16 18 C 0.15 7.93 6.66 22.91 0.15 8.08 16 19 O -0.19 -12.36 7.84 0.81 0.01 -12.35 16 20 C -0.43 -26.54 9.44 67.93 0.64 -25.90 16 21 H 0.11 5.84 5.29 -2.91 -0.02 5.82 16 22 C -0.02 -1.34 5.49 84.85 0.47 -0.87 16 23 N -0.91 -60.33 13.67 21.62 0.30 -60.04 16 24 Si 1.02 44.94 29.55 68.60 2.03 46.97 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.25 -10.20 7.11 99.48 0.71 -9.50 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.82 6.35 -2.39 -0.02 0.80 16 31 H 0.06 1.19 5.24 -2.39 -0.01 1.18 16 32 H 0.05 0.70 7.96 -2.38 -0.02 0.68 16 33 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.07 0.93 5.92 -2.39 -0.01 0.92 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.38 8.06 -2.39 -0.02 1.36 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.65 8.11 -2.39 -0.02 1.63 16 41 H 0.40 10.85 3.55 -92.71 -0.33 10.52 16 42 H 0.15 3.40 6.23 -2.91 -0.02 3.39 16 43 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 45 H 0.12 5.46 5.71 -2.91 -0.02 5.45 16 46 H 0.27 16.52 8.31 -92.71 -0.77 15.75 16 Total: -1.00 -89.37 365.72 1.98 -87.40 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.67 Total: 33.00 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 5.38 Total: -17.23 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -6.36 Total: -102.71 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: 0.26 Total: -47.43 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -89.37 1.98 -87.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194091278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.781 kcal (2) G-P(sol) polarization free energy of solvation -89.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds